MD04G1190600.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000341
Physical Location & Seq
Forward (+)
28053163 .. 28054632
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1190600.v1.1.491

Sequence Viewer

Length: 201 bp
ATGCGTTTGTTTCCAAAATCTGAACCTGGATACCGCATTCAACCAATAATTAATATGTTTATAGTCGATATGGCTCCGGTCAAAAGCCAAGGTTATGACTGTGGATGTTGTTGGGCGTTCGCATCAGTGGCAACCGTAGAAGGGCTTAACAAACTCAAAACAGGAAGCCTAATTTCACTATCAAAACAAGAGCAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

8.55

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 24 - 64 2.5e-10 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 25
AseI ATTAAT 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 141
BsmI GAATGC 1 cut(s) 36
BspACI CCGC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 101, 136
BstF5I GGATG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 132
CviJI RGCY 4 cut(s) 74, 87, 145, 168
CviKI_1 RGCY 4 cut(s) 74, 87, 145, 168
Eco130I CCWWGG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 5 cut(s) 56, 62, 71, 96, 199
FokI GGATG 1 cut(s) 117
HapII CCGG 1 cut(s) 77
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 101, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 12, 39, 90, 147
LweI GCATC 1 cut(s) 131
MluCI AATT 2 cut(s) 48, 171
MseI TTAA 2 cut(s) 51, 147
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 75
PctI GAATGC 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 51, 147
ScrFI CCNGG 1 cut(s) 27
SetI ASST 2 cut(s) 28, 94
SfaNI GCATC 1 cut(s) 131
SgeI CNNG 5 cut(s) 38, 39, 89, 101, 174
Sse9I AATT 2 cut(s) 48, 171
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 101, 136
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 48, 171
Tru1I TTAA 2 cut(s) 51, 147
Tru9I TTAA 2 cut(s) 51, 147
TscAI CASTG 1 cut(s) 132
TspRI CASTG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.