AT3G49340

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000341
Physical Location & Seq
Reverse (-)
18293173 .. 18294621
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49340.1

Sequence Viewer

Length: 1026 bp
ATGACTTCGATCGTTTTCTTTCTTCTAGCCATTCTTTTGAGTTCCAGAACTTCAGGAGTCACATCTCGTGGCGGGCTCTTTGAAGCTTCTGCCGTAGAGAAACATGAGCAATGGATGTCTCGATTCAATCGCGTGTACTCAGACGATTCTGAGAAAACGAGTAGGTTCGAGATCTTTACGAATAACTTAAAGTTTGTCGAGAGCATCAATATGAATACGAACAAAACGTACACGTTGGATGTTAACGAGTTCTCTGATCTCACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTGGTGCCCGAAGGTATGACCAGAATTTCAACAACTGATTCTCATGAAACGGTATCGTTTAGATATGAAAACGTTGGTGAAACCGGTGAGAGCATGGATTGGATACAGGAAGGGGCTGTTACATCCGTTAAGCACCAACAACAATGTGGATGTTGCTGGGCTTTCTCGGCGGTGGCAGCAGTGGAAGGCATGACGAAGATTGCGAATGGAGAGCTTGTATCGCTGTCTGAGCAGCAACTGTTGGATTGTAGTACGGAAAACAATGGATGTGGCGGAGGGATAATGTGGAAAGCTTTCGACTACATTAAAGAAAACCAAGGTATCACCACAGAGGATAACTATCCTTACCAAGGAGCACAACAAACATGTGAGTCAAATCATCTAGCTGCTGCTACCATCAGCGGATACGAAACGGTTCCCCAAAATGACGAGGAAGCATTGCTAAAAGCAGTGTCTCAACAGCCTGTTTCCGTGGCGATCGAAGGGTCAGGATATGAGTTTATACACTACTCGGGAGGGATATTTAACGGAGAGTGTGGGACGCAGCTTACTCATGCAGTTACTATAGTTGGTTATGGGGTGAGCGAAGAAGGCATCAAGTATTGGTTGTTGAAGAACTCATGGGGAGAATCTTGGGGAGAAAATGGTTATATGAGAATCATGAGAGACGTAGATTCACCTCAGGGAATGTGTGGTTTGGCCAGCCTTGCTTACTATCCAGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

341

Amino Acids

37.69

Weight (kDa)

4.56

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 35 - 92 4.2e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 129 - 340 3.6e-77 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 72, 467, 570, 699
AclI AACGTT 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 2 cut(s) 272, 321
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 4 cut(s) 137, 230, 287, 550
AfiI CCNNNNNNNGG 1 cut(s) 647
AflIII ACRYGT 2 cut(s) 231, 662
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 83, 127, 327, 910
AluBI AGCT 5 cut(s) 86, 511, 590, 683, 844
AluI AGCT 5 cut(s) 86, 511, 590, 683, 844
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 3 cut(s) 123, 756, 957
AlwNI CAGNNNCTG 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 1 cut(s) 996
ApeKI GCWGC 5 cut(s) 473, 529, 683, 686, 841
ApoI RAATTY 2 cut(s) 272, 321
AsiGI ACCGGT 1 cut(s) 380
Asp700I GAANNNNTTC 2 cut(s) 590, 711
AsuHPI GGTGA 6 cut(s) 253, 386, 395, 613, 889, 966
AvaI CYCGRG 1 cut(s) 808
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 1 cut(s) 306
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BalI TGGCCA 1 cut(s) 998
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 78
BauI CACGAG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 5 cut(s) 485, 541, 670, 673, 853
BccI CCATC 1 cut(s) 701
BceAI ACGGC 1 cut(s) 77
BciVI GTATCC 2 cut(s) 393, 695
BcoDI GTCTC 3 cut(s) 123, 756, 957
BfaI CTAG 2 cut(s) 26, 680
BfmI CTRYAG 1 cut(s) 861
BfuI GTATCC 2 cut(s) 393, 695
BglII AGATCT 1 cut(s) 171
BisI GCNGC 5 cut(s) 474, 530, 684, 687, 842
BlsI GCNGC 5 cut(s) 475, 531, 685, 688, 843
BmeT110I CYCGRG 1 cut(s) 808
BmiI GGNNCC 2 cut(s) 303, 714
BmsI GCATC 2 cut(s) 213, 900
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 3 cut(s) 613, 646, 768
BsaWI WCCGGW 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 1016
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 116, 734
Bse8I GATNNNNATC 1 cut(s) 636
BseDI CCNNGG 3 cut(s) 613, 646, 768
BseGI GGATG 5 cut(s) 120, 244, 419, 452, 569
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 647
BseMI GCAATG 2 cut(s) 116, 734
BseMII CTCAG 4 cut(s) 141, 153, 516, 992
BseNI ACTGG 1 cut(s) 1016
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 5 cut(s) 485, 541, 670, 673, 853
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 2 cut(s) 12, 777
BshFI GGCC 1 cut(s) 998
BshNI GGYRCC 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 380
BsiEI CGRYCG 2 cut(s) 12, 777
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 3 cut(s) 123, 756, 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 1 cut(s) 998
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 3 cut(s) 78, 306, 655
Bsp143I GATC 4 cut(s) 9, 171, 256, 774
BspACI CCGC 4 cut(s) 72, 467, 570, 699
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 4 cut(s) 142, 152, 517, 991
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 2 cut(s) 340, 957
BspLI GGNNCC 2 cut(s) 303, 714
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 116, 734
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 1016
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 613, 646, 768
BssMI GATC 4 cut(s) 9, 171, 256, 774
BssSI CACGAG 1 cut(s) 66
BssT1I CCWWGG 2 cut(s) 613, 646
Bst2BI CACGAG 1 cut(s) 66
Bst4CI ACNGT 3 cut(s) 349, 537, 712
BstC8I GCNNGC 2 cut(s) 74, 1000
BstDEI CTNAG 4 cut(s) 139, 150, 525, 978
BstDSI CCRYGG 1 cut(s) 768
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 5 cut(s) 120, 244, 419, 452, 569
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 4 cut(s) 12, 174, 259, 777
BstMAI GTCTC 3 cut(s) 123, 756, 957
BstMBI GATC 4 cut(s) 9, 171, 256, 774
BstMCI CGRYCG 2 cut(s) 12, 777
BstMWI GCNNNNNNNGC 7 cut(s) 301, 464, 473, 517, 526, 888, 1004
BstNSI RCATGY 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 5 cut(s) 485, 541, 670, 673, 853
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 978
BsuI GTATCC 2 cut(s) 393, 695
BsuRI GGCC 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 5 cut(s) 120, 244, 419, 452, 569
BtsI GCAGTG 2 cut(s) 483, 753
BtsIMutI CAGTG 2 cut(s) 483, 753
Cac8I GCNNGC 2 cut(s) 74, 1000
CaiI CAGNNNCTG 1 cut(s) 535
CciI TCATGA 2 cut(s) 340, 957
Cfr10I RCCGGY 1 cut(s) 380
CseI GACGC 1 cut(s) 847
Csp6I GTAC 4 cut(s) 136, 229, 286, 549
CspAI ACCGGT 1 cut(s) 380
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 8 cut(s) 104, 341, 391, 487, 663, 851, 918, 958
CviQI GTAC 4 cut(s) 136, 229, 286, 549
DdeI CTNAG 4 cut(s) 139, 150, 525, 978
DpnI GATC 4 cut(s) 11, 173, 258, 776
DpnII GATC 4 cut(s) 9, 171, 256, 774
EaeI YGGCCR 1 cut(s) 996
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 2 cut(s) 613, 646
Eco24I GRGCYC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 808
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 613, 646
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 2 cut(s) 613, 646
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 8 cut(s) 107, 344, 394, 490, 666, 854, 921, 961
FaqI GGGAC 1 cut(s) 850
FatI CATG 8 cut(s) 103, 340, 390, 486, 662, 850, 917, 957
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 5 cut(s) 474, 530, 684, 687, 842
FokI GGATG 5 cut(s) 127, 251, 406, 459, 576
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 5 cut(s) 474, 530, 684, 687, 842
FspBI CTAG 2 cut(s) 26, 680
GluI GCNGC 5 cut(s) 474, 530, 684, 687, 842
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 1 cut(s) 998
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 847
Hin1II CATG 8 cut(s) 107, 344, 394, 490, 666, 854, 921, 961
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 2 cut(s) 84, 588
HinfI GANTC 8 cut(s) 57, 123, 146, 335, 668, 926, 954, 971
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 381
HphI GGTGA 6 cut(s) 253, 386, 395, 613, 889, 966
Hpy166II GTNNAC 4 cut(s) 136, 231, 244, 288
Hpy188I TCNGA 4 cut(s) 142, 151, 256, 526
Hpy188III TCNNGA 9 cut(s) 45, 54, 120, 169, 199, 341, 786, 810, 958
Hpy8I GTNNAC 4 cut(s) 136, 231, 244, 288
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 5 cut(s) 302, 401, 476, 773, 881
HpyCH4III ACNGT 3 cut(s) 349, 537, 712
HpyCH4IV ACGT 4 cut(s) 227, 233, 369, 966
HpyCH4V TGCA 1 cut(s) 854
HpyF10VI GCNNNNNNNGC 7 cut(s) 301, 464, 473, 517, 526, 888, 1004
HpyF3I CTNAG 4 cut(s) 139, 150, 525, 978
HpySE526I ACGT 4 cut(s) 227, 233, 369, 966
Hsp92II CATG 8 cut(s) 107, 344, 394, 490, 666, 854, 921, 961
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 9, 171, 256, 774
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 5 cut(s) 485, 541, 670, 673, 853
LweI GCATC 2 cut(s) 213, 900
MaeI CTAG 2 cut(s) 26, 680
MaeII ACGT 4 cut(s) 227, 233, 369, 966
MaeIII GTNAC 3 cut(s) 58, 415, 856
MalI GATC 4 cut(s) 11, 173, 258, 776
MboI GATC 4 cut(s) 9, 171, 256, 774
MboII GAAGA 4 cut(s) 14, 505, 896, 922
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 3 cut(s) 78, 306, 655
MlsI TGGCCA 1 cut(s) 998
MluCI AATT 2 cut(s) 272, 321
MluNI TGGCCA 1 cut(s) 998
MlyI GAGTC 2 cut(s) 66, 677
MmeI TCCRAC 2 cut(s) 216, 519
MnlI CCTC 7 cut(s) 262, 276, 566, 622, 721, 806, 987
Mox20I TGGCCA 1 cut(s) 998
MroXI GAANNNNTTC 2 cut(s) 590, 711
MscI TGGCCA 1 cut(s) 998
MseI TTAA 6 cut(s) 188, 243, 276, 426, 603, 822
MslI CAYNNNNRTG 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 699
MspI CCGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 7 cut(s) 301, 464, 473, 517, 526, 888, 1004
NdeII GATC 4 cut(s) 9, 171, 256, 774
NlaIII CATG 8 cut(s) 107, 344, 394, 490, 666, 854, 921, 961
NlaIV GGNNCC 2 cut(s) 303, 714
NmeAIII GCCGAG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 666
PagI TCATGA 2 cut(s) 340, 957
PciI ACATGT 1 cut(s) 662
PcsI WCGNNNNNNNCGW 2 cut(s) 224, 497
PdmI GAANNNNTTC 2 cut(s) 590, 711
PfeI GAWTC 6 cut(s) 123, 146, 335, 926, 954, 971
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 5 cut(s) 475, 531, 685, 688, 843
Ple19I CGATCG 2 cut(s) 12, 777
PleI GAGTC 2 cut(s) 65, 676
PpsI GAGTC 2 cut(s) 65, 676
PscI ACATGT 1 cut(s) 662
Psp1406I AACGTT 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 303, 714
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PstNI CAGNNNCTG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 171
PvuI CGATCG 2 cut(s) 12, 777
RsaI GTAC 4 cut(s) 137, 230, 287, 550
RsaNI GTAC 4 cut(s) 136, 229, 286, 549
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 6 cut(s) 188, 243, 276, 426, 603, 822
SatI GCNGC 5 cut(s) 474, 530, 684, 687, 842
Sau3AI GATC 4 cut(s) 9, 171, 256, 774
SchI GAGTC 2 cut(s) 66, 677
SduI GDGCHC 3 cut(s) 78, 306, 655
SfaNI GCATC 2 cut(s) 213, 900
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 2 cut(s) 272, 321
SsiI CCGC 4 cut(s) 72, 467, 570, 699
SspMI CTAG 2 cut(s) 26, 680
StyI CCWWGG 2 cut(s) 613, 646
TaaI ACNGT 3 cut(s) 349, 537, 712
TaiI ACGT 4 cut(s) 230, 236, 372, 969
TaqI TCGA 6 cut(s) 8, 121, 168, 198, 594, 777
TasI AATT 2 cut(s) 272, 321
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 6 cut(s) 123, 146, 335, 926, 954, 971
Tru1I TTAA 6 cut(s) 188, 243, 276, 426, 603, 822
Tru9I TTAA 6 cut(s) 188, 243, 276, 426, 603, 822
TscAI CASTG 2 cut(s) 483, 753
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 5 cut(s) 473, 529, 683, 686, 841
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 227, 357, 378
TspGWI ACGGA 4 cut(s) 412, 566, 757, 840
TspRI CASTG 2 cut(s) 483, 753
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 2 cut(s) 272, 321
XceI RCATGY 1 cut(s) 666
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmnI GAANNNNTTC 2 cut(s) 590, 711
XspI CTAG 2 cut(s) 26, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.