FvH4_3g07960

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000341
Physical Location & Seq
Forward (+)
4694839 .. 4696739
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07960.t1

Sequence Viewer

Length: 825 bp
ATGGCAAAGTATGGCCGCATTTACCCTACTAGCCAAGAGAAGGGAAAACGTCTCGCCATATTCCAAACCAACTTGGAGTATGTGGAGAATTTCAACAAGCAAAAGAATAAGACTTACAAGTTGGGTCTGAACCAATTTTCTGATATGACCAATGAAGAATTCCTCCGACATCATACCGGATACAAAAGAATTCCGACCACCTCAACCTCTTTTAGGTACCAAAACCTGTCGGATGATGATGTCCCCAATAGCATTGATTGGAGGAAACAAGGGGCTACCCCTGTAAAGAATCAAGCAGACTGTGCAGTGGCAGCTGTGGAAGGGATCACCAAAGTAAGAACTGGCCAATTGATCTCGTTGTCTGAACAACAGCTCGTGAACTGTAATAAAGATATGTACAACAATGGTTGCAACGGTGGGAGCATGGTAGATGCCTTCAAGTACATACAACAAAATGGTGGAATCGCCGGTGAAGATAATTATCCATACACCGCCAGGGACGGAACATGTGACAATAATAAGGAAAAACAACATGGTGCCACTGTAACTGGTTTTGAACAAGTGCCTCAAGGGGAACTGAATCTTCTCAAGGCCGTATCCAGGCAACCTGTCTCGGTCGGCATTTCAGTCGAGGGACAAGACTTTCAGCACTACCAAAGTGGGGTTTTCTCTGGTGATTGTGGACTAAACCTTGATCATGCTGTTACAGCCGTCGGAGTTCTTAGAGATAATGGTCAGCGGGAAGGTGAATGTGGCATTGCTATGGATGCTGCATGCTTATCCAACGGCATAAGTAGAATGTATACAGACCTAGGCAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

275

Amino Acids

30.27

Weight (kDa)

5.98

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 54 2e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 81 - 245 3e-45 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 216, 536
AccI GTMKAC 1 cut(s) 803
AciI CCGC 3 cut(s) 16, 492, 739
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 2 cut(s) 13, 343
AcsI RAATTY 3 cut(s) 88, 158, 189
AfaI GTAC 3 cut(s) 218, 398, 443
AfiI CCNNNNNNNGG 4 cut(s) 40, 213, 600, 661
AflIII ACRYGT 1 cut(s) 506
AgsI TTSAA 3 cut(s) 94, 439, 557
AjnI CCWGG 2 cut(s) 494, 599
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 314, 373
AluI AGCT 2 cut(s) 314, 373
Alw26I GTCTC 2 cut(s) 56, 616
AlwI GGATC 1 cut(s) 332
AoxI GGCC 3 cut(s) 13, 343, 591
ApeKI GCWGC 2 cut(s) 311, 770
ApoI RAATTY 3 cut(s) 88, 158, 189
Asp718I GGTACC 1 cut(s) 216
AspA2I CCTAGG 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 319, 482, 686, 758
AvrII CCTAGG 1 cut(s) 811
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 2 cut(s) 216, 536
BauI CACGAG 1 cut(s) 374
BbvI GCAGC 2 cut(s) 323, 757
BceAI ACGGC 3 cut(s) 578, 695, 802
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BciT130I CCWGG 2 cut(s) 496, 601
BciVI GTATCC 2 cut(s) 173, 607
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 2 cut(s) 56, 616
BfaI CTAG 2 cut(s) 30, 812
BfuI GTATCC 2 cut(s) 173, 607
BisI GCNGC 3 cut(s) 16, 312, 771
BlnI CCTAGG 1 cut(s) 811
BlsI GCNGC 3 cut(s) 17, 313, 772
Bme1390I CCNGG 2 cut(s) 496, 601
BmiI GGNNCC 2 cut(s) 218, 538
BmrFI CCNGG 2 cut(s) 496, 601
BmsI GCATC 2 cut(s) 421, 757
BpuEI CTTGAG 2 cut(s) 552, 572
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 495, 811
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 213, 600, 661
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 346, 553
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 2 cut(s) 496, 601
BseDI CCNNGG 2 cut(s) 495, 811
BseGI GGATG 2 cut(s) 238, 772
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 4 cut(s) 40, 213, 600, 661
BseMI GCAATG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 346, 553
BseXI GCAGC 2 cut(s) 323, 757
BsgI GTGCAG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 618
BshFI GGCC 3 cut(s) 15, 345, 593
BshNI GGYRCC 2 cut(s) 216, 536
BsiEI CGRYCG 1 cut(s) 618
BsiSI CCGG 2 cut(s) 177, 468
BslFI GGGAC 3 cut(s) 227, 512, 648
BslI CCNNNNNNNGG 4 cut(s) 40, 213, 600, 661
BsmAI GTCTC 2 cut(s) 56, 616
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 3 cut(s) 227, 512, 648
BsnI GGCC 3 cut(s) 15, 345, 593
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 324, 351, 694
BspACI CCGC 3 cut(s) 16, 492, 739
BspANI GGCC 3 cut(s) 15, 345, 593
BspLI GGNNCC 2 cut(s) 218, 538
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 216, 536
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 346, 553
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 495, 811
BssMI GATC 3 cut(s) 324, 351, 694
BssNAI GTATAC 1 cut(s) 804
BssSI CACGAG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 811
Bst1107I GTATAC 1 cut(s) 804
Bst2BI CACGAG 1 cut(s) 374
Bst2UI CCWGG 2 cut(s) 496, 601
Bst4CI ACNGT 4 cut(s) 302, 383, 416, 544
BstAPI GCANNNNNTGC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 1 cut(s) 722
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 238, 772
BstKTI GATC 3 cut(s) 327, 354, 697
BstMAI GTCTC 2 cut(s) 56, 616
BstMBI GATC 3 cut(s) 324, 351, 694
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 4 cut(s) 302, 311, 707, 767
BstNI CCWGG 2 cut(s) 496, 601
BstNSI RCATGY 2 cut(s) 510, 777
BstSCI CCNGG 2 cut(s) 494, 599
BstV1I GCAGC 2 cut(s) 323, 757
BstZ17I GTATAC 1 cut(s) 804
BsuI GTATCC 2 cut(s) 173, 607
BsuRI GGCC 3 cut(s) 15, 345, 593
BtsCI GGATG 2 cut(s) 238, 772
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 540
Cac8I GCNNGC 1 cut(s) 775
Cfr10I RCCGGY 1 cut(s) 467
Csp6I GTAC 3 cut(s) 217, 397, 442
CviAII CATG 5 cut(s) 424, 507, 533, 698, 774
CviJI RGCY 8 cut(s) 15, 33, 275, 314, 345, 373, 593, 710
CviKI_1 RGCY 8 cut(s) 15, 33, 275, 314, 345, 373, 593, 710
CviQI GTAC 3 cut(s) 217, 397, 442
DdeI CTNAG 1 cut(s) 722
DpnI GATC 3 cut(s) 326, 353, 696
DpnII GATC 3 cut(s) 324, 351, 694
EaeI YGGCCR 2 cut(s) 13, 343
Eco130I CCWWGG 1 cut(s) 811
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRI GAATTC 2 cut(s) 158, 189
EcoRII CCWGG 2 cut(s) 494, 599
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 5 cut(s) 427, 510, 536, 701, 777
FaqI GGGAC 3 cut(s) 227, 512, 648
FatI CATG 5 cut(s) 423, 506, 532, 697, 773
FauI CCCGC 1 cut(s) 732
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 3 cut(s) 16, 312, 771
FokI GGATG 2 cut(s) 245, 779
Fsp4HI GCNGC 3 cut(s) 16, 312, 771
FspBI CTAG 2 cut(s) 30, 812
GluI GCNGC 3 cut(s) 16, 312, 771
HaeIII GGCC 3 cut(s) 15, 345, 593
HapII CCGG 2 cut(s) 177, 468
Hin1II CATG 5 cut(s) 427, 510, 536, 701, 777
HinfI GANTC 3 cut(s) 289, 462, 580
HpaII CCGG 2 cut(s) 177, 468
HphI GGTGA 4 cut(s) 319, 482, 686, 758
Hpy166II GTNNAC 3 cut(s) 379, 683, 804
Hpy188I TCNGA 7 cut(s) 129, 142, 167, 195, 232, 364, 716
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 3 cut(s) 379, 683, 804
Hpy99I CGWCG 1 cut(s) 716
HpyAV CCTTC 4 cut(s) 34, 314, 445, 737
HpyCH4III ACNGT 4 cut(s) 302, 383, 416, 544
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 305, 411, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 311, 707, 767
HpyF3I CTNAG 1 cut(s) 722
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 5 cut(s) 427, 510, 536, 701, 777
KpnI GGTACC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 3 cut(s) 324, 351, 694
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 323, 757
LweI GCATC 2 cut(s) 421, 757
MaeI CTAG 2 cut(s) 30, 812
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 3 cut(s) 509, 544, 703
MalI GATC 3 cut(s) 326, 353, 696
MboI GATC 3 cut(s) 324, 351, 694
MboII GAAGA 3 cut(s) 167, 485, 575
MfeI CAATTG 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 7 cut(s) 88, 134, 158, 189, 347, 478, 817
MluNI TGGCCA 1 cut(s) 345
MmeI TCCRAC 5 cut(s) 190, 210, 218, 694, 807
MnlI CCTC 6 cut(s) 173, 211, 217, 255, 576, 625
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
MseI TTAA 1 cut(s) 823
MslI CAYNNNNRTG 1 cut(s) 761
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 314, 739
MspI CCGG 2 cut(s) 177, 468
MspR9I CCNGG 2 cut(s) 496, 601
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 2 cut(s) 496, 601
MwoI GCNNNNNNNGC 4 cut(s) 302, 311, 707, 767
NdeII GATC 3 cut(s) 324, 351, 694
NlaIII CATG 5 cut(s) 427, 510, 536, 701, 777
NlaIV GGNNCC 2 cut(s) 218, 538
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 510, 777
PaeI GCATGC 1 cut(s) 777
PciI ACATGT 1 cut(s) 506
PfeI GAWTC 3 cut(s) 289, 462, 580
PkrI GCNGC 3 cut(s) 17, 313, 772
PscI ACATGT 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 494, 599
PspGI CCWGG 2 cut(s) 494, 599
PspN4I GGNNCC 2 cut(s) 218, 538
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 3 cut(s) 218, 398, 443
RsaNI GTAC 3 cut(s) 217, 397, 442
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 1 cut(s) 823
SatI GCNGC 3 cut(s) 16, 312, 771
Sau3AI GATC 3 cut(s) 324, 351, 694
ScrFI CCNGG 2 cut(s) 496, 601
SfaNI GCATC 2 cut(s) 421, 757
SgrAI CRCCGGYG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 567, 587
SmoI CTYRAG 2 cut(s) 567, 587
SphI GCATGC 1 cut(s) 777
Sse9I AATT 7 cut(s) 88, 134, 158, 189, 347, 478, 817
SsiI CCGC 3 cut(s) 16, 492, 739
SspMI CTAG 2 cut(s) 30, 812
StyD4I CCNGG 2 cut(s) 494, 599
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 4 cut(s) 302, 383, 416, 544
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 630
TaqII GACCGA 1 cut(s) 604
TasI AATT 7 cut(s) 88, 134, 158, 189, 347, 478, 817
TatI WGTACW 2 cut(s) 396, 441
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 289, 462, 580
Tru1I TTAA 1 cut(s) 823
Tru9I TTAA 1 cut(s) 823
TscAI CASTG 2 cut(s) 312, 547
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 311, 770
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 2 cut(s) 312, 547
XagI CCTNNNNNAGG 1 cut(s) 211
XapI RAATTY 3 cut(s) 88, 158, 189
XceI RCATGY 2 cut(s) 510, 777
XmaJI CCTAGG 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 803
XspI CTAG 2 cut(s) 30, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.