RchiOBHm_Chr5g0010361

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000341
Physical Location & Seq
Reverse (-)
6854235 .. 6855160
926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29112

Sequence Viewer

Length: 852 bp
ATGAAGAATGTTGAATTTGTGGAGAAATCCAACAGTGAAGGGAACAAGACTTACAAGTTGAGCATCAACGAATTTTCTGATATGACTAATGAAGAATTCATGAGACATCATACTGGATACAAAATCCCCTCCAGCTCAAGTTCAACCTATTTCGAACATAAATCTTTTCGGTACCAAAGCTTGGCTGCAACTGAGGTTCCAGCTAGCATGGACTGGAGGGAGCAAGGAGCTGTTACCCGCATAAGAAATCAAGGTCAATGTGGTGCTTGTTGGGCATTTACCGTAGTGGCAACAGTAGAAGGGCTAATCCAAATCAAAACTGGCCAATTGATCCCGCTGTCCGAGCAACAACTTGTCGATTGTGATCACAACAACAATGGCTGCGACGGTGGCAGTGAAGTGAATGCATTTCAATACATAATACAAAATGGAGGAATCGCTAGTGAAGAAAATTACCAATACCAGAGCACAGACATGGGATCATGTGACACTAACAAGGAAAGTGACCATGCTGCCCAGATCACTGGTTATGAAATAGTCCCTTCCAAAAGTGAAGACGATCTACTAAAGGCTGTGTCCAAGCAACCAGTCTCGGTTAGCATTGATGCTTCTGGTGTAGCGTTTCAGCATTACAGTAGTGGGGTGTTTTCCGGTGATTGCGGGACGAACCTCCATCATGCTGTTGCAGCCATTGGGTACGGAACAACTGAAGGTGACATCGACTATTGGTTATTGAAGAATTCGTGGGGTGAGACTTGGGGTGAAAATGGCTATATGAAAATTCTTAGAAACGTTGACGCCCCAGAAGGTAAGTGTGGCCTTGCTATCAGGGCTTCCTATCCGACTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

283

Amino Acids

31.05

Weight (kDa)

4.88

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 33 8.2e-09 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 66 - 282 1.6e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 181
AciI CCGC 3 cut(s) 238, 335, 660
AclI AACGTT 1 cut(s) 792
AclWI GGATC 2 cut(s) 325, 487
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 5 cut(s) 14, 71, 95, 739, 780
AcuI CTGAAG 1 cut(s) 729
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 2 cut(s) 173, 698
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 4 cut(s) 14, 144, 413, 736
AluBI AGCT 4 cut(s) 135, 180, 203, 230
AluI AGCT 4 cut(s) 135, 180, 203, 230
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 97, 595, 746
AlwI GGATC 2 cut(s) 325, 487
AoxI GGCC 2 cut(s) 322, 817
ApeKI GCWGC 4 cut(s) 185, 381, 512, 686
ApoI RAATTY 5 cut(s) 14, 71, 95, 739, 780
Asp718I GGTACC 1 cut(s) 171
AsuHPI GGTGA 4 cut(s) 665, 725, 761, 773
AsuII TTCGAA 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 171
BarI GAAGNNNNNNTAC 2 cut(s) 546, 578
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 4 cut(s) 172, 368, 499, 698
BccI CCATC 1 cut(s) 681
BciVI GTATCC 1 cut(s) 110
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 97, 595, 746
BfaI CTAG 2 cut(s) 204, 441
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 4 cut(s) 186, 382, 513, 687
BlsI GCNGC 4 cut(s) 187, 383, 514, 688
BmiI GGNNCC 2 cut(s) 173, 198
BmsI GCATC 2 cut(s) 72, 595
BmtI GCTAGC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 561
BpmI CTGGAG 2 cut(s) 115, 235
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 798
BsaWI WCCGGW 1 cut(s) 650
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 5 cut(s) 118, 218, 325, 529, 587
Bse8I GATNNNNATC 1 cut(s) 363
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 5 cut(s) 118, 218, 325, 529, 587
BseXI GCAGC 4 cut(s) 172, 368, 499, 698
BshFI GGCC 2 cut(s) 324, 819
BshNI GGYRCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 2 cut(s) 524, 676
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 3 cut(s) 97, 595, 746
BsmFI GGGAC 2 cut(s) 524, 676
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 2 cut(s) 324, 819
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 5 cut(s) 330, 364, 479, 519, 559
BspACI CCGC 3 cut(s) 238, 335, 660
BspANI GGCC 2 cut(s) 324, 819
BspCNI CTCAG 1 cut(s) 184
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 173, 198
BspOI GCTAGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 325, 487
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 171
BsrI ACTGG 5 cut(s) 118, 218, 325, 529, 587
BssMI GATC 5 cut(s) 330, 364, 479, 519, 559
BssNI GRCGYC 1 cut(s) 798
Bst4CI ACNGT 5 cut(s) 35, 283, 295, 389, 635
BstACI GRCGYC 1 cut(s) 798
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 192, 785
BstKTI GATC 5 cut(s) 333, 367, 482, 522, 562
BstMAI GTCTC 3 cut(s) 97, 595, 746
BstMBI GATC 5 cut(s) 330, 364, 479, 519, 559
BstMWI GCNNNNNNNGC 5 cut(s) 272, 343, 390, 686, 830
BstV1I GCAGC 4 cut(s) 172, 368, 499, 698
BstV2I GAAGAC 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 2 cut(s) 324, 819
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 40, 400, 522
Cac8I GCNNGC 1 cut(s) 205
CciI TCATGA 1 cut(s) 99
CseI GACGC 1 cut(s) 806
Csp6I GTAC 2 cut(s) 172, 697
CviAII CATG 6 cut(s) 100, 208, 475, 483, 509, 677
CviQI GTAC 2 cut(s) 172, 697
DdeI CTNAG 2 cut(s) 192, 785
DpnI GATC 5 cut(s) 332, 366, 481, 521, 561
DpnII GATC 5 cut(s) 330, 364, 479, 519, 559
EaeI YGGCCR 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 729
EcoRI GAATTC 2 cut(s) 95, 739
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 6 cut(s) 103, 211, 478, 486, 512, 680
FaqI GGGAC 2 cut(s) 524, 676
FatI CATG 6 cut(s) 99, 207, 474, 482, 508, 676
FauI CCCGC 3 cut(s) 245, 342, 653
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 186, 382, 513, 687
Fsp4HI GCNGC 4 cut(s) 186, 382, 513, 687
FspBI CTAG 2 cut(s) 204, 441
GluI GCNGC 4 cut(s) 186, 382, 513, 687
GsuI CTGGAG 2 cut(s) 115, 235
HaeIII GGCC 2 cut(s) 324, 819
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 6 cut(s) 103, 211, 478, 486, 512, 680
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 1 cut(s) 435
HpaII CCGG 1 cut(s) 651
HphI GGTGA 4 cut(s) 665, 725, 761, 773
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 3 cut(s) 79, 343, 843
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 5 cut(s) 32, 293, 552, 704, 800
HpyCH4III ACNGT 5 cut(s) 35, 283, 295, 389, 635
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 3 cut(s) 188, 407, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 343, 390, 686, 830
HpyF3I CTNAG 2 cut(s) 192, 785
HpySE526I ACGT 1 cut(s) 792
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 6 cut(s) 103, 211, 478, 486, 512, 680
KpnI GGTACC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 5 cut(s) 330, 364, 479, 519, 559
LmnI GCTCC 2 cut(s) 220, 227
Lsp1109I GCAGC 4 cut(s) 172, 368, 499, 698
LweI GCATC 2 cut(s) 72, 595
MaeI CTAG 2 cut(s) 204, 441
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 4 cut(s) 232, 485, 503, 713
MalI GATC 5 cut(s) 332, 366, 481, 521, 561
MboI GATC 5 cut(s) 330, 364, 479, 519, 559
MboII GAAGA 5 cut(s) 16, 104, 458, 566, 748
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 7 cut(s) 14, 71, 95, 326, 451, 739, 780
MluNI TGGCCA 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 139, 187, 210, 425, 680
Mox20I TGGCCA 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 409
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 5 cut(s) 272, 343, 390, 686, 830
NdeII GATC 5 cut(s) 330, 364, 479, 519, 559
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 6 cut(s) 103, 211, 478, 486, 512, 680
NlaIV GGNNCC 2 cut(s) 173, 198
NmuCI GTSAC 3 cut(s) 485, 503, 713
NsiI ATGCAT 1 cut(s) 409
NspV TTCGAA 1 cut(s) 153
PagI TCATGA 1 cut(s) 99
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 4 cut(s) 187, 383, 514, 688
Psp1406I AACGTT 1 cut(s) 792
PspN4I GGNNCC 2 cut(s) 173, 198
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
RsaI GTAC 2 cut(s) 173, 698
RsaNI GTAC 2 cut(s) 172, 697
RseI CAYNNNNRTG 1 cut(s) 473
SatI GCNGC 4 cut(s) 186, 382, 513, 687
Sau3AI GATC 5 cut(s) 330, 364, 479, 519, 559
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 2 cut(s) 72, 595
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 7 cut(s) 14, 71, 95, 326, 451, 739, 780
SsiI CCGC 3 cut(s) 238, 335, 660
SspMI CTAG 2 cut(s) 204, 441
TaaI ACNGT 5 cut(s) 35, 283, 295, 389, 635
TaiI ACGT 1 cut(s) 795
TaqI TCGA 3 cut(s) 153, 357, 720
TasI AATT 7 cut(s) 14, 71, 95, 326, 451, 739, 780
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 3 cut(s) 40, 400, 529
TseFI GTSAC 3 cut(s) 485, 503, 713
TseI GCWGC 4 cut(s) 185, 381, 512, 686
Tsp45I GTSAC 3 cut(s) 485, 503, 713
TspDTI ATGAA 5 cut(s) 17, 88, 105, 546, 791
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 3 cut(s) 40, 400, 529
Van91I CCANNNNNTGG 1 cut(s) 181
XapI RAATTY 5 cut(s) 14, 71, 95, 739, 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 2 cut(s) 204, 441
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.