RchiOBHm_Chr5g0023601

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000341
Physical Location & Seq
Forward (+)
17674621 .. 17674986
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30346

Sequence Viewer

Length: 366 bp
ATGGCTTTTGAAAAAATCCTTGTGATGATTGCCATATTCATCATCTTGGGGACCTTACTGACATCCCAAGCCACATCTCGCGCCTTGTACAAAGCTTCCATTGCTGAGAAACATGAGCAATGGATGGCCGAGTATGGGCGTGTCTACCCGGACAGCACAGAGAAGGAAAGACGTTTTGCCATATTCAAGAAGAATGTAGAGTTTGTGGAGAAATTCAACAATGACAGGGAAAAGACGTACAAGTTAAGCGTCAATCAGTTCTCTGATATGACCAGTGAAGAATTCCGCAGACAACATACTGGATACAAAACTCCCGCCGGCTCCAGTTTAACATCCTCATCCGAAGATAAGTCCTTTACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

121

Amino Acids

14.07

Weight (kDa)

8.8

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 4.8e-21 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 286, 315
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 212, 281
AfaI GTAC 2 cut(s) 89, 239
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 3 cut(s) 11, 187, 217
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 212, 281
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 51
BccI CCATC 1 cut(s) 118
BciVI GTATCC 1 cut(s) 296
BcnI CCSGG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 52, 322
BmrFI CCNGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 273, 304, 324
Bse3DI GCAATG 2 cut(s) 99, 125
BseGI GGATG 4 cut(s) 62, 129, 332, 338
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 273, 304, 324
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 149, 318
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 87
BspACI CCGC 2 cut(s) 286, 315
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 52, 322
BsrDI GCAATG 2 cut(s) 99, 125
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 3 cut(s) 273, 304, 324
BssAI RCCGGY 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 62, 129, 332, 338
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 4 cut(s) 62, 129, 332, 338
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 88, 238
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 5, 71, 95, 128, 321
CviKI_1 RGCY 5 cut(s) 5, 71, 95, 128, 321
CviQI GTAC 2 cut(s) 88, 238
DdeI CTNAG 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 281
FaeI CATG 1 cut(s) 116
FaiI YATR 7 cut(s) 35, 114, 135, 182, 269, 297, 361
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 112
FauI CCCGC 1 cut(s) 322
FblI GTMKAC 1 cut(s) 144
FokI GGATG 4 cut(s) 49, 136, 319, 325
GlaI GCGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 149, 318
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 2 cut(s) 149, 318
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 265, 343
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 172, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 172, 236
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 81
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 6 cut(s) 162, 211, 285, 286, 331, 337
MaeII ACGT 2 cut(s) 172, 236
MboII GAAGA 3 cut(s) 202, 290, 356
MluCI AATT 2 cut(s) 212, 281
MnlI CCTC 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 2 cut(s) 245, 329
MspI CCGG 2 cut(s) 149, 318
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 101
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 1 cut(s) 149
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 52, 322
NmeAIII GCCGAG 1 cut(s) 154
PdiI GCCGGC 1 cut(s) 319
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 52, 322
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 89, 239
RsaNI GTAC 2 cut(s) 88, 238
SaqAI TTAA 2 cut(s) 245, 329
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 149
SetI ASST 4 cut(s) 56, 97, 175, 239
SinI GGWCC 1 cut(s) 51
Sse9I AATT 2 cut(s) 212, 281
SsiI CCGC 2 cut(s) 286, 315
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 175, 239
TasI AATT 2 cut(s) 212, 281
TatI WGTACW 1 cut(s) 87
Tru1I TTAA 2 cut(s) 245, 329
Tru9I TTAA 2 cut(s) 245, 329
TscAI CASTG 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 212, 281
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.