RLG00000032730

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000341
Physical Location & Seq
Reverse (-)
18375291 .. 18376436
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032730

Sequence Viewer

Length: 1020 bp
ATGATTGCCATATTCATCATCTTGGGGACCTTGGCATCCCAAGCCACATCTCGCGCATTGTACAAAGCTTCCATTGCTGAGAAACATGAGCAATGGATGGCCGAGTATGGGCGTGTCTACCCGGACAGCACAGAGAAGGAAAGACGTTTTGCCATAGTCAAGAAGAATGTAGAGTTTGTGGAGAAATTCAACAATGACAGGGAAAAGACGTACAAGTTAAGCTTCAATCAGTTCTCTGATATGACCAATGAAGAATTCCTCAGACATCATACTGGATACAAAACGCCCGCCGGCTCCAGTTTAACATCCTCATCCGAAGATAAGTCCTTTATATACCGAAGCCTGTCCATTGATGATATTCCAGCTAGCCTCGACTGGAGGGAACAAGGAGCGGTCACCTCTATTAAGGATCAAGGTTTATGTAATGTTTGCTGGGCATTTGCTGCGGCGGCAGCTGTGGAAGGGATTACGAAAATCAAAACCGGCCAATTGGTCTCGCTGTCCGAGCAACAACTTTTGGAGAGTGACCGCGACATCGGCTGCGGAAGCGGTGACATCCGATCAGCTTTTGAATACATAAAGACAAATGGAGGAATTGCTAGTGAAGAAAAGTACCCATACCTGAGCACTTCTAACATGTTAACGGTCCATGAATGCGACACTCGAAAGAAAACTATGCATGCTGCCCGGATAACTGGTAATGAAAATGTAACATCCAACAATCAAAATGCTCTACTCAAGGCTGTTTCCATGCAACCAGTCTCGACTGCCATCGACGGTCATGGAATGGAATTTCGGTCATACGGAGGTGGAGTGTTTAAAGGTCCTTGCGGTCACACACTGAACCATGCTGTCACAATTATTGGGTACGGGACTGAAAACGGCACCAACTACTGCCTAATTAAGAATTCATGGGGGGACAAGTGGGGTGAAAAGGGCTACATGAGAATTCTTAGAACTGAAACATATGGTGCAGGTCTTTGTGGCCTTGCTATGTATGCTTCCTATCCGATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

340

Amino Acids

37.52

Weight (kDa)

6.72

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 29 - 86 7.5e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 120 - 338 1.1e-67 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 884
AccBSI CCGCTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 54, 531
AciI CCGC 8 cut(s) 288, 392, 446, 449, 529, 543, 549, 831
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 2 cut(s) 99, 484
AcsI RAATTY 5 cut(s) 185, 254, 791, 907, 948
AfaI GTAC 4 cut(s) 62, 212, 614, 869
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 190, 226, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 5 cut(s) 68, 222, 365, 455, 566
AluI AGCT 5 cut(s) 68, 222, 365, 455, 566
Alw21I GWGCWC 1 cut(s) 629
Alw26I GTCTC 2 cut(s) 499, 766
AlwI GGATC 1 cut(s) 417
AoxI GGCC 3 cut(s) 99, 484, 985
ApeKI GCWGC 4 cut(s) 443, 452, 540, 683
ApoI RAATTY 5 cut(s) 185, 254, 791, 907, 948
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 27, 646, 824
AsuC2I CCSGG 2 cut(s) 122, 688
AsuHPI GGTGA 3 cut(s) 388, 563, 941
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 3 cut(s) 27, 646, 824
BanI GGYRCC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 430, 464, 527, 670
BccI CCATC 2 cut(s) 91, 779
BceAI ACGGC 1 cut(s) 898
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 2 cut(s) 122, 688
BcoDI GTCTC 2 cut(s) 499, 766
BfaI CTAG 2 cut(s) 366, 600
BfuAI ACCTGC 1 cut(s) 965
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 6 cut(s) 444, 447, 450, 453, 541, 684
BlsI GCNGC 6 cut(s) 445, 448, 451, 454, 542, 685
Bme1390I CCNGG 2 cut(s) 122, 688
Bme18I GGWCC 3 cut(s) 27, 646, 824
BmgT120I GGNCC 3 cut(s) 27, 646, 824
BmiI GGNNCC 3 cut(s) 28, 295, 886
BmrFI CCNGG 2 cut(s) 122, 688
BmsI GCATC 1 cut(s) 44
BmtI GCTAGC 1 cut(s) 369
BpmI CTGGAG 2 cut(s) 280, 397
Bpu10I CCTNAGC 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 2 cut(s) 122, 688
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 2 cut(s) 290, 482
Bse1I ACTGG 5 cut(s) 277, 297, 380, 700, 758
Bse3DI GCAATG 2 cut(s) 72, 98
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 6 cut(s) 35, 102, 305, 311, 555, 713
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 2 cut(s) 72, 98
BseMII CTCAG 3 cut(s) 69, 274, 614
BseNI ACTGG 5 cut(s) 277, 297, 380, 700, 758
BseXI GCAGC 4 cut(s) 430, 464, 527, 670
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 993
Bsh1236I CGCG 2 cut(s) 54, 531
BshFI GGCC 3 cut(s) 101, 486, 987
BshNI GGYRCC 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 629
BsiSI CCGG 4 cut(s) 122, 291, 483, 688
BslFI GGGAC 3 cut(s) 40, 886, 932
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 499, 766
BsmFI GGGAC 3 cut(s) 40, 886, 932
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 3 cut(s) 101, 486, 987
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 629
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 2 cut(s) 409, 560
BspACI CCGC 8 cut(s) 288, 392, 446, 449, 529, 543, 549, 831
BspANI GGCC 3 cut(s) 101, 486, 987
BspCNI CTCAG 3 cut(s) 70, 273, 615
BspFNI CGCG 2 cut(s) 54, 531
BspLI GGNNCC 3 cut(s) 28, 295, 886
BspMI ACCTGC 1 cut(s) 965
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 392
BsrDI GCAATG 2 cut(s) 72, 98
BsrFI RCCGGY 2 cut(s) 290, 482
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 5 cut(s) 277, 297, 380, 700, 758
BssAI RCCGGY 2 cut(s) 290, 482
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 409, 560
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 646, 779
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 288, 292, 367, 681
BstDEI CTNAG 4 cut(s) 78, 260, 623, 953
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 6 cut(s) 35, 102, 305, 311, 555, 713
BstFNI CGCG 2 cut(s) 54, 531
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 412, 563
BstMAI GTCTC 2 cut(s) 499, 766
BstMBI GATC 2 cut(s) 409, 560
BstMWI GCNNNNNNNGC 9 cut(s) 41, 74, 443, 449, 452, 505, 537, 546, 998
BstNSI RCATGY 2 cut(s) 640, 683
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 2 cut(s) 120, 686
BstUI CGCG 2 cut(s) 54, 531
BstV1I GCAGC 4 cut(s) 430, 464, 527, 670
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 3 cut(s) 101, 486, 987
BtsCI GGATG 6 cut(s) 35, 102, 305, 311, 555, 713
BtsIMutI CAGTG 1 cut(s) 839
BveI ACCTGC 1 cut(s) 965
Cac8I GCNNGC 4 cut(s) 288, 292, 367, 681
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 290, 482
Cfr13I GGNCC 3 cut(s) 27, 646, 824
Csp6I GTAC 4 cut(s) 61, 211, 613, 868
CviAII CATG 9 cut(s) 86, 637, 650, 680, 751, 782, 848, 912, 943
CviQI GTAC 4 cut(s) 61, 211, 613, 868
DdeI CTNAG 4 cut(s) 78, 260, 623, 953
DpnI GATC 2 cut(s) 411, 562
DpnII GATC 2 cut(s) 409, 560
DraI TTTAAA 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 99, 484
Eco130I CCWWGG 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 499
Eco47I GGWCC 3 cut(s) 27, 646, 824
Eco91I GGTNACC 1 cut(s) 394
EcoO109I RGGNCCY 2 cut(s) 27, 824
EcoO65I GGTNACC 1 cut(s) 394
EcoRI GAATTC 3 cut(s) 254, 907, 948
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 9 cut(s) 89, 640, 653, 683, 754, 785, 851, 915, 946
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 3 cut(s) 40, 886, 932
FatI CATG 9 cut(s) 85, 636, 649, 679, 750, 781, 847, 911, 942
FauI CCCGC 1 cut(s) 295
FauNDI CATATG 1 cut(s) 967
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 6 cut(s) 444, 447, 450, 453, 541, 684
FokI GGATG 6 cut(s) 22, 109, 292, 298, 542, 700
Fsp4HI GCNGC 6 cut(s) 444, 447, 450, 453, 541, 684
FspBI CTAG 2 cut(s) 366, 600
GlaI GCGC 1 cut(s) 55
GluI GCNGC 6 cut(s) 444, 447, 450, 453, 541, 684
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 2 cut(s) 280, 397
HaeIII GGCC 3 cut(s) 101, 486, 987
HapII CCGG 4 cut(s) 122, 291, 483, 688
HhaI GCGC 1 cut(s) 56
Hin1II CATG 9 cut(s) 89, 640, 653, 683, 754, 785, 851, 915, 946
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 2 cut(s) 66, 220
HpaI GTTAAC 1 cut(s) 642
HpaII CCGG 4 cut(s) 122, 291, 483, 688
HphI GGTGA 3 cut(s) 388, 563, 941
Hpy166II GTNNAC 2 cut(s) 118, 642
Hpy188I TCNGA 6 cut(s) 238, 263, 316, 505, 560, 1011
Hpy188III TCNNGA 2 cut(s) 160, 763
Hpy8I GTNNAC 2 cut(s) 118, 642
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 2 cut(s) 130, 455
HpyCH4III ACNGT 2 cut(s) 646, 779
HpyCH4IV ACGT 2 cut(s) 145, 209
HpyCH4V TGCA 3 cut(s) 679, 754, 974
HpyF10VI GCNNNNNNNGC 9 cut(s) 41, 74, 443, 449, 452, 505, 537, 546, 998
HpyF3I CTNAG 4 cut(s) 78, 260, 623, 953
HpySE526I ACGT 2 cut(s) 145, 209
Hsp92II CATG 9 cut(s) 89, 640, 653, 683, 754, 785, 851, 915, 946
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 642
Kzo9I GATC 2 cut(s) 409, 560
LmnI GCTCC 2 cut(s) 299, 389
Lsp1109I GCAGC 4 cut(s) 430, 464, 527, 670
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 366, 600
MaeII ACGT 2 cut(s) 145, 209
MaeIII GTNAC 6 cut(s) 394, 524, 551, 709, 833, 853
MalI GATC 2 cut(s) 411, 562
MbiI CCGCTC 1 cut(s) 392
MboI GATC 2 cut(s) 409, 560
MboII GAAGA 4 cut(s) 175, 263, 329, 617
MfeI CAATTG 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 629
MluCI AATT 9 cut(s) 185, 254, 488, 594, 791, 858, 900, 907, 948
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 7 cut(s) 269, 319, 372, 380, 409, 584, 800
Mph1103I ATGCAT 1 cut(s) 681
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 6 cut(s) 218, 302, 405, 641, 819, 903
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 4 cut(s) 122, 291, 483, 688
MspR9I CCNGG 2 cut(s) 122, 688
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 659
MvnI CGCG 2 cut(s) 54, 531
MwoI GCNNNNNNNGC 9 cut(s) 41, 74, 443, 449, 452, 505, 537, 546, 998
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 122, 688
NdeI CATATG 1 cut(s) 967
NdeII GATC 2 cut(s) 409, 560
NgoMIV GCCGGC 1 cut(s) 290
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 9 cut(s) 89, 640, 653, 683, 754, 785, 851, 915, 946
NlaIV GGNNCC 3 cut(s) 28, 295, 886
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 5 cut(s) 394, 524, 551, 833, 853
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 2 cut(s) 640, 683
PaeI GCATGC 1 cut(s) 683
PciI ACATGT 1 cut(s) 636
PctI GAATGC 1 cut(s) 659
PdiI GCCGGC 1 cut(s) 292
PkrI GCNGC 6 cut(s) 445, 448, 451, 454, 542, 685
PpuMI RGGWCCY 2 cut(s) 27, 824
PscI ACATGT 1 cut(s) 636
Psp5II RGGWCCY 2 cut(s) 27, 824
PspEI GGTNACC 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 432
PspN4I GGNNCC 3 cut(s) 28, 295, 886
PspPI GGNCC 3 cut(s) 27, 646, 824
PspPPI RGGWCCY 2 cut(s) 27, 824
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 4 cut(s) 62, 212, 614, 869
RsaNI GTAC 4 cut(s) 61, 211, 613, 868
SaqAI TTAA 6 cut(s) 218, 302, 405, 641, 819, 903
SatI GCNGC 6 cut(s) 444, 447, 450, 453, 541, 684
Sau3AI GATC 2 cut(s) 409, 560
Sau96I GGNCC 3 cut(s) 27, 646, 824
ScrFI CCNGG 2 cut(s) 122, 688
SduI GDGCHC 1 cut(s) 629
SfaNI GCATC 1 cut(s) 44
SinI GGWCC 3 cut(s) 27, 646, 824
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 683
Sse9I AATT 9 cut(s) 185, 254, 488, 594, 791, 858, 900, 907, 948
SsiI CCGC 8 cut(s) 288, 392, 446, 449, 529, 543, 549, 831
SspMI CTAG 2 cut(s) 366, 600
StyD4I CCNGG 2 cut(s) 120, 686
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 646, 779
TaiI ACGT 2 cut(s) 148, 212
TaqI TCGA 4 cut(s) 372, 664, 764, 774
TaqII GACCGA 1 cut(s) 786
TasI AATT 9 cut(s) 185, 254, 488, 594, 791, 858, 900, 907, 948
TatI WGTACW 1 cut(s) 60
TauI GCSGC 2 cut(s) 449, 452
Tru1I TTAA 6 cut(s) 218, 302, 405, 641, 819, 903
Tru9I TTAA 6 cut(s) 218, 302, 405, 641, 819, 903
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 5 cut(s) 394, 524, 551, 833, 853
TseI GCWGC 4 cut(s) 443, 452, 540, 683
Tsp45I GTSAC 5 cut(s) 394, 524, 551, 833, 853
TspDTI ATGAA 5 cut(s) 4, 264, 666, 717, 900
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 1 cut(s) 846
VpaK11BI GGWCC 3 cut(s) 27, 646, 824
XapI RAATTY 5 cut(s) 185, 254, 791, 907, 948
XceI RCATGY 2 cut(s) 640, 683
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 366, 600
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.