Rmu_co8273509.1_g000001

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8273509.1
OG0000341
Physical Location & Seq
Forward (+)
1 .. 798
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8273509.1_g000001.1.cds

Sequence Viewer

Length: 680 bp
gttgttgttgggctttctcagcggtggcagctgtggatgggattaccaaaataagaactggccaaatgatcccgctgtccgagcaacaacttgtggactgcaatagagatatgtacaacattggttgtgagggtggtaatatggtagatgccttcaggtacatcaaaacaaatggtggaatcaccagcgaaggtaattaccaatacactgctagggacggagcgtgttacagtaataaagaaaaacagcatgatgccacaataaccggttttgaacaagtgcctcgaggggaaatgcatttgctcaaggctgtttccatgcaaccagtctcggttcacattgatgcccatggaaaagactttaagcactactcgagtggggtattttcgggagattgtggaacaaaacttaaccacgctattgtagtcatcgggtatggaaaaactgaagacggcattgactactggttactgaaaaactcatggagtgagcaatggggtgaaaatggctacatgagaattcttagaaatgctggtcccccggaaggtcagtgcggcattgcgatgcgcgcttcctatccaacaactacaagtgaaatccataactccataagtgaacgtcattcgatttactcttgggttattgccctttgttggctctgtctctattttctttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

225

Amino Acids

25.14

Weight (kDa)

6.06

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
AccII CGCG 1 cut(s) 569
AciI CCGC 3 cut(s) 22, 73, 554
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 138, 467
AfaI GTAC 2 cut(s) 115, 160
AfiI CCNNNNNNNGG 2 cut(s) 544, 653
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 333, 667
AlwI GGATC 1 cut(s) 63
Ama87I CYCGRG 2 cut(s) 284, 372
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 518
AsiGI ACCGGT 1 cut(s) 265
AspLEI GCGC 2 cut(s) 569, 571
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 2 cut(s) 174, 511
AvaI CYCGRG 2 cut(s) 284, 372
AvaII GGWCC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 468
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 333, 667
BfaI CTAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 29, 555
BlsI GCNGC 2 cut(s) 30, 556
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 535
BmeT110I CYCGRG 2 cut(s) 284, 372
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 4 cut(s) 138, 243, 333, 554
BpiI GAAGAC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 348, 539
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 653
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 3 cut(s) 63, 325, 469
Bse3DI GCAATG 2 cut(s) 499, 557
BseDI CCNNGG 2 cut(s) 348, 539
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 544, 653
BseMI GCAATG 2 cut(s) 499, 557
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 3 cut(s) 63, 325, 469
BsePI GCGCGC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 265
BsiHKCI CYCGRG 2 cut(s) 284, 372
BsiSI CCGG 2 cut(s) 266, 541
BslFI GGGAC 2 cut(s) 229, 521
BslI CCNNNNNNNGG 2 cut(s) 544, 653
BsmAI GTCTC 2 cut(s) 333, 667
BsmFI GGGAC 2 cut(s) 229, 521
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 284, 372
Bsp1407I TGTACA 1 cut(s) 113
Bsp143I GATC 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 3 cut(s) 22, 73, 554
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 499, 557
BsrFI RCCGGY 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 3 cut(s) 63, 325, 469
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 348, 539
BssHII GCGCGC 1 cut(s) 567
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 569
BstDEI CTNAG 2 cut(s) 18, 523
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 569
BstHHI GCGC 2 cut(s) 569, 571
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 2 cut(s) 333, 667
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 4 cut(s) 19, 28, 81, 568
BstSCI CCNGG 1 cut(s) 539
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 577
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 556
Cac8I GCNNGC 1 cut(s) 569
CfoI GCGC 2 cut(s) 569, 571
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 114, 159
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 5 cut(s) 250, 318, 349, 482, 513
CviJI RGCY 6 cut(s) 13, 31, 62, 310, 509, 657
CviKI_1 RGCY 6 cut(s) 13, 31, 62, 310, 509, 657
CviQI GTAC 2 cut(s) 114, 159
DdeI CTNAG 2 cut(s) 18, 523
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 2 cut(s) 138, 467
Eco88I CYCGRG 2 cut(s) 284, 372
EcoRI GAATTC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 5 cut(s) 253, 321, 352, 485, 516
FaqI GGGAC 2 cut(s) 229, 521
FatI CATG 5 cut(s) 249, 317, 348, 481, 512
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 29, 555
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 29, 555
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 568, 570
GluI GCNGC 2 cut(s) 29, 555
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 266, 541
HhaI GCGC 2 cut(s) 569, 571
Hin1II CATG 5 cut(s) 253, 321, 352, 485, 516
Hin6I GCGC 2 cut(s) 567, 569
HinP1I GCGC 2 cut(s) 567, 569
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 266, 541
HphI GGTGA 2 cut(s) 174, 511
Hpy166II GTNNAC 3 cut(s) 96, 336, 616
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 3 cut(s) 96, 336, 616
HpyAV CCTTC 3 cut(s) 162, 184, 538
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 3 cut(s) 101, 297, 321
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 28, 81, 568
HpyF3I CTNAG 2 cut(s) 18, 523
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 5 cut(s) 253, 321, 352, 485, 516
HspAI GCGC 2 cut(s) 567, 569
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 8 cut(s) 44, 141, 198, 279, 338, 450, 518, 554
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 4 cut(s) 138, 243, 333, 554
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 2 cut(s) 226, 467
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 460
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 195, 518
MluNI TGGCCA 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 3 cut(s) 123, 280, 293
Mox20I TGGCCA 1 cut(s) 62
Mph1103I ATGCAT 1 cut(s) 299
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 362, 410
MslI CAYNNNNRTG 2 cut(s) 341, 562
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 3 cut(s) 22, 31, 75
MspI CCGG 2 cut(s) 266, 541
MspR9I CCNGG 1 cut(s) 541
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 4 cut(s) 19, 28, 81, 568
NciI CCSGG 1 cut(s) 541
NcoI CCATGG 1 cut(s) 348
NdeII GATC 1 cut(s) 68
NlaIII CATG 5 cut(s) 253, 321, 352, 485, 516
NlaIV GGNNCC 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 299
PaeR7I CTCGAG 2 cut(s) 284, 372
PauI GCGCGC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 2 cut(s) 30, 556
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 535
PspXI VCTCGAGB 2 cut(s) 284, 372
PteI GCGCGC 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 115, 160
RsaNI GTAC 2 cut(s) 114, 159
RseI CAYNNNNRTG 2 cut(s) 341, 562
SaqAI TTAA 2 cut(s) 362, 410
SatI GCNGC 2 cut(s) 29, 555
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 541
SetI ASST 5 cut(s) 33, 160, 195, 549, 621
SfaNI GCATC 4 cut(s) 138, 243, 333, 554
Sfr274I CTCGAG 2 cut(s) 284, 372
SinI GGWCC 1 cut(s) 535
SlaI CTCGAG 2 cut(s) 284, 372
SmiMI CAYNNNNRTG 2 cut(s) 341, 562
SmlI CTYRAG 3 cut(s) 284, 304, 372
SmoI CTYRAG 3 cut(s) 284, 304, 372
Sse9I AATT 2 cut(s) 195, 518
SsiI CCGC 3 cut(s) 22, 73, 554
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 539
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 621
TaqI TCGA 3 cut(s) 285, 373, 625
TasI AATT 2 cut(s) 195, 518
TatI WGTACW 1 cut(s) 113
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 362, 410
Tru9I TTAA 2 cut(s) 362, 410
TscAI CASTG 2 cut(s) 213, 556
TseI GCWGC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 213, 556
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 518
XhoI CTCGAG 2 cut(s) 284, 372
XspI CTAG 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.