RLG00000031742

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000341
Physical Location & Seq
Reverse (-)
7912291 .. 7913400
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031742

Sequence Viewer

Length: 999 bp
ATGGCTTTTGAACGAGTTAACCTTGTGATTGTTACTACACTGGTCACCATGGGAGTTTTGGCTTCGCAAGCAGCATCCCTTTCACTGTACGAAGCTTCCATTGCTGAGAAACATGAGCAATGGATGGAGAAGTACGGACGCGTTTACCCCAACAGTACAGAGAAGCAAAGGCGTTTCGCTGTTTTCATGAAGAATGTCGAATTTGTGGAGAAATCCAACTGTGAAGGGAACAAGACTTACAAAATCATGAGACATCATACTGGATACAAAATCCCCACCAGCTCAAGTTCAACCTCTTCCAAACATAAATCTTTTTGGTACCAAAGCTTGGCTGCAACTGAGGTTCCAGCTAGCATGGACTGGAGGGAGCAAGGAGCTGTTACCCGCATAAGAAATCAAGGTCAATGTGGTGCTTGTTGGGCATTTACCGTAGTGGCAGCAGTAGAAGGGCTAATCCAAATCAAAACTGGCCAATTGATCCCGCTGTCCGAGCAACAACTTGTCGAATGTGATTACAACAACAATGGCTGCAACGGTGGCAGTGAAGTGAACGCATTTAAATACATAATACAAAATGGAGGAATCGCTAGTGAAGAAAATTACCAATACCAGAGCACAGACATGGGAACATGTGACACTAACAAGGAAAGTGAACATGCTGCCCAGATCACTGGTTATGAAATAGTCCCTTCCAGAAGTGAAGATGATCTACTCAAGGCTGTGTCCAAGCAACCAGTCTCGGTTAGCATCGATGCTTCTGGTGCAGCGTTTCAGCATTACAGTAGCGGGGTGTTCTCCGGTAATTGCGGGACGAACCTCCATCATGCTGTTGCAGCCATTGGGTACGGAACAACTGAAGGTGAAATCGACTATTGGTTATTGAAGAATTCGTGGGGTGAGACTTGGGGTGAAAATGGCTATATGAAAATTCTTAGAAACGTTGATGCCCCAGAAGGTATGTGTGGCCTTGCTATCAGAGCTTCCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

333

Amino Acids

36.57

Weight (kDa)

5.67

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 81 3.3e-11 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 115 - 331 3.1e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 328
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 385, 482, 786, 807
AclI AACGTT 1 cut(s) 939
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 3 cut(s) 200, 886, 927
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 5 cut(s) 89, 134, 157, 320, 845
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 2 cut(s) 139, 629
AgsI TTSAA 3 cut(s) 11, 291, 883
AluBI AGCT 6 cut(s) 95, 282, 327, 350, 377, 980
AluI AGCT 6 cut(s) 95, 282, 327, 350, 377, 980
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 3 cut(s) 244, 742, 893
AlwI GGATC 1 cut(s) 472
AoxI GGCC 2 cut(s) 469, 964
ApeKI GCWGC 7 cut(s) 71, 332, 437, 528, 659, 764, 833
ApoI RAATTY 3 cut(s) 200, 886, 927
Asp718I GGTACC 1 cut(s) 318
AsuHPI GGTGA 4 cut(s) 37, 872, 908, 920
AsuNHI GCTAGC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 7 cut(s) 83, 319, 449, 515, 646, 776, 845
BccI CCATC 2 cut(s) 118, 828
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 244, 742, 893
BfaI CTAG 2 cut(s) 351, 588
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 7 cut(s) 72, 333, 438, 529, 660, 765, 834
BlsI GCNGC 7 cut(s) 73, 334, 439, 530, 661, 766, 835
BmiI GGNNCC 2 cut(s) 320, 345
BmsI GCATC 4 cut(s) 83, 742, 756, 934
BmtI GCTAGC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 382
BpuEI CTTGAG 2 cut(s) 268, 698
Bsa29I ATCGAT 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 6 cut(s) 45, 265, 365, 472, 676, 734
Bse3DI GCAATG 2 cut(s) 99, 125
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 74, 129
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 2 cut(s) 96, 330
BseNI ACTGG 6 cut(s) 45, 265, 365, 472, 676, 734
BseXI GCAGC 7 cut(s) 83, 319, 449, 515, 646, 776, 845
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 471, 966
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 1 cut(s) 798
BslFI GGGAC 2 cut(s) 671, 823
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 3 cut(s) 244, 742, 893
BsmFI GGGAC 2 cut(s) 671, 823
BsnI GGCC 2 cut(s) 471, 966
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 3 cut(s) 477, 666, 706
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 385, 482, 786, 807
BspANI GGCC 2 cut(s) 471, 966
BspCNI CTCAG 2 cut(s) 97, 331
BspDI ATCGAT 1 cut(s) 750
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 2 cut(s) 186, 246
BspLI GGNNCC 2 cut(s) 320, 345
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 99, 125
BsrI ACTGG 6 cut(s) 45, 265, 365, 472, 676, 734
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 477, 666, 706
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 6 cut(s) 87, 155, 221, 430, 536, 782
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 69, 352
BstDEI CTNAG 3 cut(s) 105, 339, 932
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 74, 129
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 480, 669, 709
BstMAI GTCTC 3 cut(s) 244, 742, 893
BstMBI GATC 3 cut(s) 477, 666, 706
BstMWI GCNNNNNNNGC 8 cut(s) 68, 101, 419, 490, 537, 761, 833, 977
BstNSI RCATGY 2 cut(s) 633, 659
BstPI GGTNACC 1 cut(s) 43
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 7 cut(s) 83, 319, 449, 515, 646, 776, 845
BstXI CCANNNNNNTGG 1 cut(s) 671
Bsu15I ATCGAT 1 cut(s) 750
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 471, 966
BsuTUI ATCGAT 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 74, 129
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 38, 83, 547, 669
Cac8I GCNNGC 2 cut(s) 69, 352
CciI TCATGA 2 cut(s) 186, 246
ClaI ATCGAT 1 cut(s) 750
CseI GACGC 1 cut(s) 147
Csp6I GTAC 5 cut(s) 88, 133, 156, 319, 844
CviAII CATG 9 cut(s) 49, 113, 187, 247, 355, 622, 630, 656, 824
CviQI GTAC 5 cut(s) 88, 133, 156, 319, 844
DdeI CTNAG 3 cut(s) 105, 339, 932
DpnI GATC 3 cut(s) 479, 668, 708
DpnII GATC 3 cut(s) 477, 666, 706
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 876
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 9 cut(s) 52, 116, 190, 250, 358, 625, 633, 659, 827
FaqI GGGAC 2 cut(s) 671, 823
FatI CATG 9 cut(s) 48, 112, 186, 246, 354, 621, 629, 655, 823
FauI CCCGC 4 cut(s) 392, 489, 779, 800
Fnu4HI GCNGC 7 cut(s) 72, 333, 438, 529, 660, 765, 834
FokI GGATG 2 cut(s) 61, 136
Fsp4HI GCNGC 7 cut(s) 72, 333, 438, 529, 660, 765, 834
FspBI CTAG 2 cut(s) 351, 588
GluI GCNGC 7 cut(s) 72, 333, 438, 529, 660, 765, 834
GsuI CTGGAG 1 cut(s) 382
HaeIII GGCC 2 cut(s) 471, 966
HapII CCGG 1 cut(s) 798
HgaI GACGC 1 cut(s) 147
Hin1II CATG 9 cut(s) 52, 116, 190, 250, 358, 625, 633, 659, 827
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 2 cut(s) 93, 325
HinfI GANTC 1 cut(s) 582
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 798
HphI GGTGA 4 cut(s) 37, 872, 908, 920
Hpy166II GTNNAC 4 cut(s) 19, 145, 550, 653
Hpy188I TCNGA 3 cut(s) 490, 977, 990
Hpy188III TCNNGA 3 cut(s) 187, 247, 693
Hpy8I GTNNAC 4 cut(s) 19, 145, 550, 653
HpyAV CCTTC 5 cut(s) 218, 440, 699, 851, 947
HpyCH4III ACNGT 6 cut(s) 87, 155, 221, 430, 536, 782
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 5 cut(s) 335, 531, 764, 833, 995
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 101, 419, 490, 537, 761, 833, 977
HpyF3I CTNAG 3 cut(s) 105, 339, 932
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 9 cut(s) 52, 116, 190, 250, 358, 625, 633, 659, 827
KpnI GGTACC 1 cut(s) 322
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 477, 666, 706
LmnI GCTCC 2 cut(s) 367, 374
Lsp1109I GCAGC 7 cut(s) 83, 319, 449, 515, 646, 776, 845
LweI GCATC 4 cut(s) 83, 742, 756, 934
MaeI CTAG 2 cut(s) 351, 588
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 31, 43, 379, 632
MalI GATC 3 cut(s) 479, 668, 708
MboI GATC 3 cut(s) 477, 666, 706
MboII GAAGA 5 cut(s) 202, 288, 605, 713, 895
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 617
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 6 cut(s) 200, 473, 598, 802, 886, 927
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 471
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 304, 334, 357, 572, 827
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
MseI TTAA 2 cut(s) 18, 558
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 1 cut(s) 798
MunI CAATTG 1 cut(s) 473
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 8 cut(s) 68, 101, 419, 490, 537, 761, 833, 977
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 477, 666, 706
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 9 cut(s) 52, 116, 190, 250, 358, 625, 633, 659, 827
NlaIV GGNNCC 2 cut(s) 320, 345
NmuCI GTSAC 2 cut(s) 43, 632
NspI RCATGY 2 cut(s) 633, 659
PagI TCATGA 2 cut(s) 186, 246
PciI ACATGT 1 cut(s) 629
PfeI GAWTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 7 cut(s) 73, 334, 439, 530, 661, 766, 835
PscI ACATGT 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 939
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 320, 345
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
RsaI GTAC 5 cut(s) 89, 134, 157, 320, 845
RsaNI GTAC 5 cut(s) 88, 133, 156, 319, 844
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 18, 558
SatI GCNGC 7 cut(s) 72, 333, 438, 529, 660, 765, 834
Sau3AI GATC 3 cut(s) 477, 666, 706
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 4 cut(s) 83, 742, 756, 934
SmiI ATTTAAAT 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 283, 713
SmoI CTYRAG 2 cut(s) 283, 713
Sse9I AATT 6 cut(s) 200, 473, 598, 802, 886, 927
SsiI CCGC 4 cut(s) 385, 482, 786, 807
SspMI CTAG 2 cut(s) 351, 588
StyI CCWWGG 1 cut(s) 48
SwaI ATTTAAAT 1 cut(s) 559
TaaI ACNGT 6 cut(s) 87, 155, 221, 430, 536, 782
TaiI ACGT 1 cut(s) 942
TaqI TCGA 4 cut(s) 198, 504, 750, 867
TasI AATT 6 cut(s) 200, 473, 598, 802, 886, 927
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 2 cut(s) 18, 558
Tru9I TTAA 2 cut(s) 18, 558
TscAI CASTG 4 cut(s) 45, 90, 547, 676
TseFI GTSAC 2 cut(s) 43, 632
TseI GCWGC 7 cut(s) 71, 332, 437, 528, 659, 764, 833
Tsp45I GTSAC 2 cut(s) 43, 632
TspDTI ATGAA 4 cut(s) 175, 203, 693, 938
TspGWI ACGGA 2 cut(s) 150, 861
TspRI CASTG 4 cut(s) 45, 90, 547, 676
Van91I CCANNNNNTGG 1 cut(s) 328
XapI RAATTY 3 cut(s) 200, 886, 927
XceI RCATGY 2 cut(s) 633, 659
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 464
XspI CTAG 2 cut(s) 351, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.