Prupe.4G059600_v2.0.a1

Zingipain-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000341
Physical Location & Seq
Reverse (-)
2843790 .. 2845326
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G059600.1

Sequence Viewer

Length: 1020 bp
ATGGCTTTTGAGAAAAACCTTGTGGTCATTGCCATATTCATCGTCTTGGGGACTTTGGCATCTCAAGCCACATCCCGCACACTGTCCGAAGCTTCCTTTGCTGCAAAACATGATCAATGGATGGCAAAGTTTGGCCGTGTTTATGAAAGCAATGCAGAGAAGGAAAGGCGTTTCGCCATATTCAAGAAGAACGTGCAGTTTGTGGAGAAGTTCAACACTGAAGGGAACAAGACTTACAAGTTAGGACTGAATGAACATTCTGATTTGAGCGATGAAGAATTCCTCCGGCAGCGTACTGGATACAAAAGGGCCACTGAATTCACCTCATCCCCAAACATGTCTTTCAGGTACGAAGACCTCAGCCCGACTGATGTTCTGCCGAGCATCGACTGGAGGGAGAAAGGAGCTGTCACCCCCATAAAGGATCAAGGACCCTGTGGCTGTTGCTGGGCATTTTCTGTAGTGGCAGCAGTGGAAGGGATTAACCAAATCAAAACTGGGAATCTGATCTCACTGTCCGAGCAACAACTTCTGGACTGTACCAGTGGCAACTACGGCTGCGGTGGTGGTTCCTTGCCTACTACATTTGAATACATCCAACAAAGCGAAGGAATTGCCAGAGAAGAAAACTACCCGTACGAGGCTGAGCAGGGAACATGTAACGCTAATCAGCCTGCTGTCCAGATCACTGGTTATGAACAGGTGCCTGCCAATAGTGAAGAAGACCTACTCAAGGCTGTGTCCATGCAGCCAGTCTCAATAGCCATCGATGCTTCCGGGGAGGAGTTTAAGCATTACCGAAGTGGGGTCTTCTCGAACACAGATTGTGGGACGACACTGGACCATGCTGTTACCGTCGTTGGGTACGGGACGACTGAGGACGGCACTAAGTATTGGTTACTCAAGAATCAATGGGGTGAGAGCTGGGGTGAAAATGGCTATATGAAAATTCTTAGGGATGCTGGTCCCCAAGAAGGTCTCTGTGGCCTTGCTCGGGACGCTTACTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

340

Amino Acids

37.53

Weight (kDa)

4.87

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 703
AciI CCGC 2 cut(s) 76, 561
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 278, 317, 948
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 5 cut(s) 295, 350, 541, 638, 866
AfiI CCNNNNNNNGG 7 cut(s) 421, 640, 733, 805, 861, 974, 994
AflIII ACRYGT 2 cut(s) 336, 656
AgsI TTSAA 3 cut(s) 184, 214, 590
AluBI AGCT 3 cut(s) 92, 407, 924
AluI AGCT 3 cut(s) 92, 407, 924
Alw26I GTCTC 2 cut(s) 760, 983
AlwI GGATC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 993
AoxI GGCC 3 cut(s) 133, 309, 985
ApeKI GCWGC 5 cut(s) 101, 289, 467, 558, 748
ApoI RAATTY 3 cut(s) 278, 317, 948
AspS9I GGNCC 4 cut(s) 309, 431, 841, 965
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 4 cut(s) 313, 403, 929, 941
AvaI CYCGRG 1 cut(s) 993
AvaII GGWCC 3 cut(s) 431, 841, 965
BanI GGYRCC 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
BbsI GAAGAC 3 cut(s) 360, 729, 802
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 5 cut(s) 88, 301, 479, 545, 760
BccI CCATC 2 cut(s) 115, 773
BceAI ACGGC 3 cut(s) 120, 571, 898
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 2 cut(s) 760, 983
BfmI CTRYAG 1 cut(s) 459
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 5 cut(s) 102, 290, 468, 559, 749
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 5 cut(s) 103, 291, 469, 560, 750
Bme1390I CCNGG 1 cut(s) 778
Bme18I GGWCC 3 cut(s) 431, 841, 965
BmeT110I CYCGRG 1 cut(s) 993
BmgT120I GGNCC 4 cut(s) 309, 431, 841, 965
BmiI GGNNCC 4 cut(s) 433, 571, 705, 967
BmrFI CCNGG 1 cut(s) 778
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 4 cut(s) 68, 393, 760, 949
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 3 cut(s) 360, 729, 802
BpmI CTGGAG 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 3 cut(s) 48, 716, 887
BpuMI CCSGG 1 cut(s) 778
Bsa29I ATCGAT 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 1 cut(s) 777
Bsc4I CCNNNNNNNGG 7 cut(s) 421, 640, 733, 805, 861, 974, 994
Bse1I ACTGG 7 cut(s) 301, 395, 502, 543, 694, 752, 843
Bse3DI GCAATG 2 cut(s) 27, 157
BseCI ATCGAT 1 cut(s) 768
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 5 cut(s) 71, 126, 326, 594, 964
BseLI CCNNNNNNNGG 7 cut(s) 421, 640, 733, 805, 861, 974, 994
BseMI GCAATG 2 cut(s) 27, 157
BseMII CTCAG 3 cut(s) 373, 636, 867
BseNI ACTGG 7 cut(s) 301, 395, 502, 543, 694, 752, 843
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 5 cut(s) 88, 301, 479, 545, 760
BseYI CCCAGC 2 cut(s) 447, 924
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 3 cut(s) 135, 311, 987
BshNI GGYRCC 1 cut(s) 703
BshVI ATCGAT 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 993
BsiSI CCGG 2 cut(s) 286, 777
BsiWI CGTACG 1 cut(s) 636
BslFI GGGAC 5 cut(s) 64, 844, 883, 951, 1010
BslI CCNNNNNNNGG 7 cut(s) 421, 640, 733, 805, 861, 974, 994
BsmAI GTCTC 2 cut(s) 760, 983
BsmFI GGGAC 5 cut(s) 64, 844, 883, 951, 1010
BsnI GGCC 3 cut(s) 135, 311, 987
Bso31I GGTCTC 1 cut(s) 983
BsoBI CYCGRG 1 cut(s) 993
Bsp143I GATC 4 cut(s) 112, 424, 507, 684
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 2 cut(s) 76, 561
BspANI GGCC 3 cut(s) 135, 311, 987
BspCNI CTCAG 3 cut(s) 372, 637, 868
BspDI ATCGAT 1 cut(s) 768
BspLI GGNNCC 4 cut(s) 433, 571, 705, 967
BspPI GGATC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 983
BsrDI GCAATG 2 cut(s) 27, 157
BsrI ACTGG 7 cut(s) 301, 395, 502, 543, 694, 752, 843
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 4 cut(s) 112, 424, 507, 684
Bst4CI ACNGT 4 cut(s) 84, 516, 539, 856
BstC8I GCNNGC 2 cut(s) 675, 708
BstDEI CTNAG 5 cut(s) 359, 645, 876, 888, 953
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 5 cut(s) 71, 126, 326, 594, 964
BstKTI GATC 4 cut(s) 115, 427, 510, 687
BstMAI GTCTC 2 cut(s) 760, 983
BstMBI GATC 4 cut(s) 112, 424, 507, 684
BstMWI GCNNNNNNNGC 5 cut(s) 65, 98, 555, 770, 998
BstNSI RCATGY 2 cut(s) 340, 660
BstSCI CCNGG 1 cut(s) 776
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 5 cut(s) 88, 301, 479, 545, 760
BstV2I GAAGAC 3 cut(s) 360, 729, 802
BstXI CCANNNNNNTGG 1 cut(s) 689
Bsu15I ATCGAT 1 cut(s) 768
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 3 cut(s) 135, 311, 987
BsuTUI ATCGAT 1 cut(s) 768
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 5 cut(s) 71, 126, 326, 594, 964
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 8 cut(s) 80, 216, 312, 477, 512, 550, 687, 836
Cac8I GCNNGC 2 cut(s) 675, 708
Cfr13I GGNCC 4 cut(s) 309, 431, 841, 965
ClaI ATCGAT 1 cut(s) 768
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 5 cut(s) 294, 349, 540, 637, 865
CviAII CATG 5 cut(s) 110, 337, 657, 745, 845
CviQI GTAC 5 cut(s) 294, 349, 540, 637, 865
DdeI CTNAG 5 cut(s) 359, 645, 876, 888, 953
DpnI GATC 4 cut(s) 114, 426, 509, 686
DpnII GATC 4 cut(s) 112, 424, 507, 684
EaeI YGGCCR 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 3 cut(s) 431, 841, 965
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 993
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 431
EcoRI GAATTC 2 cut(s) 278, 317
FaeI CATG 5 cut(s) 113, 340, 660, 748, 848
FaqI GGGAC 5 cut(s) 64, 844, 883, 951, 1010
FatI CATG 5 cut(s) 109, 336, 656, 744, 844
FauI CCCGC 1 cut(s) 83
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 5 cut(s) 102, 290, 468, 559, 749
FokI GGATG 5 cut(s) 58, 133, 313, 581, 971
Fsp4HI GCNGC 5 cut(s) 102, 290, 468, 559, 749
GluI GCNGC 5 cut(s) 102, 290, 468, 559, 749
GsaI CCCAGC 2 cut(s) 451, 928
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 3 cut(s) 135, 311, 987
HapII CCGG 2 cut(s) 286, 777
HgaI GACGC 1 cut(s) 1007
Hin1II CATG 5 cut(s) 113, 340, 660, 748, 848
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 2 cut(s) 502, 907
HpaII CCGG 2 cut(s) 286, 777
HphI GGTGA 4 cut(s) 313, 403, 929, 941
Hpy188I TCNGA 5 cut(s) 88, 262, 507, 520, 1011
Hpy188III TCNNGA 6 cut(s) 184, 533, 682, 814, 904, 995
Hpy99I CGWCG 1 cut(s) 860
HpyAV CCTTC 5 cut(s) 154, 215, 470, 602, 968
HpyCH4III ACNGT 4 cut(s) 84, 516, 539, 856
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 104, 155, 196, 748, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 98, 555, 770, 998
HpyF3I CTNAG 5 cut(s) 359, 645, 876, 888, 953
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 5 cut(s) 113, 340, 660, 748, 848
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 112, 424, 507, 684
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 5 cut(s) 88, 301, 479, 545, 760
LweI GCATC 4 cut(s) 68, 393, 760, 949
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 4 cut(s) 409, 659, 850, 897
MalI GATC 4 cut(s) 114, 426, 509, 686
MboI GATC 4 cut(s) 112, 424, 507, 684
MboII GAAGA 7 cut(s) 199, 287, 365, 635, 731, 734, 802
MluCI AATT 4 cut(s) 278, 317, 612, 948
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 7 cut(s) 293, 334, 368, 387, 634, 775, 871
MseI TTAA 2 cut(s) 483, 789
MspI CCGG 2 cut(s) 286, 777
MspR9I CCNGG 1 cut(s) 778
MwoI GCNNNNNNNGC 5 cut(s) 65, 98, 555, 770, 998
NciI CCSGG 1 cut(s) 778
NdeII GATC 4 cut(s) 112, 424, 507, 684
NlaIII CATG 5 cut(s) 113, 340, 660, 748, 848
NlaIV GGNNCC 4 cut(s) 433, 571, 705, 967
NmeAIII GCCGAG 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 2 cut(s) 340, 660
PciI ACATGT 2 cut(s) 336, 656
PfeI GAWTC 2 cut(s) 502, 907
Pfl23II CGTACG 1 cut(s) 636
PkrI GCNGC 5 cut(s) 103, 291, 469, 560, 750
PpuMI RGGWCCY 1 cut(s) 431
PscI ACATGT 2 cut(s) 336, 656
Psp5II RGGWCCY 1 cut(s) 431
PspFI CCCAGC 2 cut(s) 447, 924
PspLI CGTACG 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 433, 571, 705, 967
PspPI GGNCC 4 cut(s) 309, 431, 841, 965
PspPPI RGGWCCY 1 cut(s) 431
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
RsaI GTAC 5 cut(s) 295, 350, 541, 638, 866
RsaNI GTAC 5 cut(s) 294, 349, 540, 637, 865
SaqAI TTAA 2 cut(s) 483, 789
SatI GCNGC 5 cut(s) 102, 290, 468, 559, 749
Sau3AI GATC 4 cut(s) 112, 424, 507, 684
Sau96I GGNCC 4 cut(s) 309, 431, 841, 965
ScrFI CCNGG 1 cut(s) 778
SfaNI GCATC 4 cut(s) 68, 393, 760, 949
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 3 cut(s) 431, 841, 965
SmlI CTYRAG 3 cut(s) 63, 731, 902
SmoI CTYRAG 3 cut(s) 63, 731, 902
Sse9I AATT 4 cut(s) 278, 317, 612, 948
SsiI CCGC 2 cut(s) 76, 561
StyD4I CCNGG 1 cut(s) 776
TaaI ACNGT 4 cut(s) 84, 516, 539, 856
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 387, 768, 815
TasI AATT 4 cut(s) 278, 317, 612, 948
TfiI GAWTC 2 cut(s) 502, 907
Tru1I TTAA 2 cut(s) 483, 789
Tru9I TTAA 2 cut(s) 483, 789
TscAI CASTG 8 cut(s) 87, 223, 319, 477, 519, 550, 694, 843
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 5 cut(s) 101, 289, 467, 558, 748
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 28, 159, 267, 288, 711, 959
TspRI CASTG 8 cut(s) 87, 223, 319, 477, 519, 550, 694, 843
VpaK11BI GGWCC 3 cut(s) 431, 841, 965
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 3 cut(s) 278, 317, 948
XceI RCATGY 2 cut(s) 340, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.