RchiOBHm_Chr5g0010401

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000341
Physical Location & Seq
Reverse (-)
6878349 .. 6879677
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29116

Sequence Viewer

Length: 1020 bp
ATGGATGTCAAAAGAAACCATGTGTTCATTGCCATATTCATCATCTTAGGGACTGTAGCATCTCAAGCCACATCCCGCGCATTGTATGCTTCTTCCTTTGCTGAAAAATTACATGAGCAATGGATGGAAAAGTTCGGACGCGTTTACCCGGACAGTGCAGAGAAGGAGAGGCGTTTTGCCATATTCATGCAGAATGTGGAGTATGTGGAGAAGTTCAATAATGAAGGGAACAAAACTTACAAGTTAAGCATCAACAAATTCTCTGACATGACCAATGAAGAGTTCCTGAGGCGTCGTACTGGGAACAAAATGGCCACCACCTCAAACTCAACCTCATTCAGGTACCAAAGTCTGGCAAGTACTGAAGTTCCAACTAGTGTTGACTGGAGGGAAAAAGGAGCTGTCACACCGATAAAGGATCAAGGAAGCTGCAGTGTTTGCTGGGCCTTTACCGCGGTAGCAGCTGTAGAAGGGCTTACCAAAATCAAAACTGACCAACTGATCTCTCTGTCTGAGCAACAACTCGTGGATTGTGATGATGGTAACTTTGGCTGTCAACCTGGTTACATAAATGAAGCCTTTGACTACATCAAGCAAAACGGAATTGCACGCGAAGAAAACTATCAATACCTAAATTCCGACAGTGCCACATGCGACACTAGCAAGGCAAATGAGCGCGCTGCTCAGATAACGGGTTATGAAAATGTGCCGACCAATAGTGAAAGTGATCTACTCAAGGCTGTGGCCATGCAACCAGTCTCAGTTGCCATTGACGCCAGCGGAGAAGCCTTTCAGTCATACAGTAGTGGGGTGTTCTCTGGTGATTGTGGTACCAGCCTGAACCATGCTGTAACAGCCGTTGGGTATGGGACGACTGAAGATGGCACCGATTATTGGTTGATGAAGAATTCATGGGGTGAGACGTGGGGTGAAAATGGCTACATAAAAATTCTTAGAAATGCTAATCCCCCATATGGTCTTTGTGGCATTGCCATCCAAGCTCTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

339

Amino Acids

37.54

Weight (kDa)

4.98

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 2e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 123 - 338 1.4e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 342, 830
AccB1I GGYRCC 3 cut(s) 342, 830, 884
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 5 cut(s) 78, 141, 455, 612, 678
AciI CCGC 4 cut(s) 76, 453, 455, 780
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 2 cut(s) 312, 744
AcsI RAATTY 4 cut(s) 257, 634, 907, 948
AcuI CTGAAG 2 cut(s) 384, 897
AcyI GRCGYC 2 cut(s) 292, 774
AfaI GTAC 4 cut(s) 298, 344, 361, 832
AfiI CCNNNNNNNGG 4 cut(s) 339, 352, 894, 974
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 1 cut(s) 217
AhlI ACTAGT 1 cut(s) 374
AjiI CACGTC 1 cut(s) 924
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 401, 429, 464, 1001
AluI AGCT 4 cut(s) 401, 429, 464, 1001
Alw26I GTCTC 2 cut(s) 763, 914
AlwI GGATC 1 cut(s) 426
AoxI GGCC 3 cut(s) 312, 444, 744
ApeKI GCWGC 3 cut(s) 429, 461, 680
ApoI RAATTY 4 cut(s) 257, 634, 907, 948
Asp700I GAANNNNTTC 1 cut(s) 789
Asp718I GGTACC 2 cut(s) 342, 830
AspLEI GCGC 3 cut(s) 80, 678, 680
AspS9I GGNCC 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 833, 929, 941
AxyI CCTNAGG 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 334, 367
BalI TGGCCA 2 cut(s) 314, 746
BanI GGYRCC 3 cut(s) 342, 830, 884
BauI CACGAG 1 cut(s) 524
BbvI GCAGC 3 cut(s) 416, 473, 667
BccI CCATC 4 cut(s) 118, 533, 875, 1001
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 763, 914
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 2 cut(s) 375, 660
BfmI CTRYAG 3 cut(s) 54, 430, 465
BisI GCNGC 3 cut(s) 430, 462, 681
BlsI GCNGC 3 cut(s) 431, 463, 682
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 149, 561
BmgBI CACGTC 1 cut(s) 924
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 3 cut(s) 344, 832, 886
BmrFI CCNGG 2 cut(s) 149, 561
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 68, 258
BmuI ACTGGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 2 cut(s) 48, 719
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 292, 774
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 352, 894, 974
Bse1I ACTGG 3 cut(s) 304, 389, 755
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 3 cut(s) 27, 125, 987
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 4 cut(s) 10, 71, 129, 993
BseLI CCNNNNNNNGG 4 cut(s) 339, 352, 894, 974
BseMI GCAATG 3 cut(s) 27, 125, 987
BseMII CTCAG 4 cut(s) 278, 504, 698, 774
BseNI ACTGG 3 cut(s) 304, 389, 755
BsePI GCGCGC 1 cut(s) 676
BseXI GCAGC 3 cut(s) 416, 473, 667
BseYI CCCAGC 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 5 cut(s) 78, 141, 455, 612, 678
BshFI GGCC 3 cut(s) 314, 446, 746
BshNI GGYRCC 3 cut(s) 342, 830, 884
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 2 cut(s) 64, 883
BslI CCNNNNNNNGG 4 cut(s) 339, 352, 894, 974
BsmAI GTCTC 2 cut(s) 763, 914
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 2 cut(s) 64, 883
BsnI GGCC 3 cut(s) 314, 446, 746
Bsp143I GATC 3 cut(s) 418, 501, 727
BspACI CCGC 4 cut(s) 76, 453, 455, 780
BspANI GGCC 3 cut(s) 314, 446, 746
BspCNI CTCAG 4 cut(s) 279, 505, 697, 773
BspFNI CGCG 5 cut(s) 78, 141, 455, 612, 678
BspLI GGNNCC 3 cut(s) 344, 832, 886
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 3 cut(s) 342, 830, 884
BsrDI GCAATG 3 cut(s) 27, 125, 987
BsrI ACTGG 3 cut(s) 304, 389, 755
BssECI CCNNGG 1 cut(s) 453
BssHII GCGCGC 1 cut(s) 676
BssMI GATC 3 cut(s) 418, 501, 727
BssNI GRCGYC 2 cut(s) 292, 774
BssSI CACGAG 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 55, 155, 644, 803
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 2 cut(s) 292, 774
BstAPI GCANNNNNTGC 2 cut(s) 86, 438
BstC8I GCNNGC 3 cut(s) 610, 678, 778
BstDEI CTNAG 6 cut(s) 46, 287, 513, 684, 760, 953
BstDSI CCRYGG 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 4 cut(s) 10, 71, 129, 993
BstFNI CGCG 5 cut(s) 78, 141, 455, 612, 678
BstHHI GCGC 3 cut(s) 80, 678, 680
BstKTI GATC 3 cut(s) 421, 504, 730
BstMAI GTCTC 2 cut(s) 763, 914
BstMBI GATC 3 cut(s) 418, 501, 727
BstMWI GCNNNNNNNGC 9 cut(s) 65, 86, 438, 452, 461, 660, 773, 854, 998
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 147, 559
BstSFI CTRYAG 3 cut(s) 54, 430, 465
BstUI CGCG 5 cut(s) 78, 141, 455, 612, 678
BstV1I GCAGC 3 cut(s) 416, 473, 667
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 314, 446, 746
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 924
BtsCI GGATG 4 cut(s) 10, 71, 129, 993
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 3 cut(s) 160, 439, 649
Cac8I GCNNGC 3 cut(s) 610, 678, 778
CfoI GCGC 3 cut(s) 80, 678, 680
Cfr13I GGNCC 1 cut(s) 444
Cfr42I CCGCGG 1 cut(s) 456
CseI GACGC 3 cut(s) 147, 281, 782
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 4 cut(s) 297, 343, 360, 831
CviAII CATG 8 cut(s) 20, 113, 187, 268, 651, 748, 845, 912
CviQI GTAC 4 cut(s) 297, 343, 360, 831
DdeI CTNAG 6 cut(s) 46, 287, 513, 684, 760, 953
DpnI GATC 3 cut(s) 420, 503, 729
DpnII GATC 3 cut(s) 418, 501, 727
EaeI YGGCCR 2 cut(s) 312, 744
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 384, 897
Eco81I CCTNAGG 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 914
FaeI CATG 8 cut(s) 23, 116, 190, 271, 654, 751, 848, 915
FaqI GGGAC 2 cut(s) 64, 883
FatI CATG 8 cut(s) 19, 112, 186, 267, 650, 747, 844, 911
FauI CCCGC 1 cut(s) 83
FauNDI CATATG 1 cut(s) 973
Fnu4HI GCNGC 3 cut(s) 430, 462, 681
FokI GGATG 4 cut(s) 17, 58, 136, 980
Fsp4HI GCNGC 3 cut(s) 430, 462, 681
FspBI CTAG 2 cut(s) 375, 660
GlaI GCGC 3 cut(s) 79, 677, 679
GluI GCNGC 3 cut(s) 430, 462, 681
GsaI CCCAGC 1 cut(s) 445
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 3 cut(s) 314, 446, 746
HapII CCGG 1 cut(s) 149
HgaI GACGC 3 cut(s) 147, 281, 782
HhaI GCGC 3 cut(s) 80, 678, 680
Hin1I GRCGYC 2 cut(s) 292, 774
Hin1II CATG 8 cut(s) 23, 116, 190, 271, 654, 751, 848, 915
Hin6I GCGC 3 cut(s) 78, 676, 678
HinP1I GCGC 3 cut(s) 78, 676, 678
HincII GTYRAC 2 cut(s) 382, 557
HindII GTYRAC 2 cut(s) 382, 557
HpaII CCGG 1 cut(s) 149
HphI GGTGA 3 cut(s) 833, 929, 941
Hpy166II GTNNAC 3 cut(s) 145, 382, 557
Hpy188I TCNGA 6 cut(s) 137, 265, 514, 640, 687, 1011
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 3 cut(s) 145, 382, 557
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 3 cut(s) 157, 218, 464
HpyCH4III ACNGT 4 cut(s) 55, 155, 644, 803
HpyCH4IV ACGT 1 cut(s) 923
HpyCH4V TGCA 6 cut(s) 158, 190, 432, 608, 751, 1016
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 86, 438, 452, 461, 660, 773, 854, 998
HpyF3I CTNAG 6 cut(s) 46, 287, 513, 684, 760, 953
HpySE526I ACGT 1 cut(s) 923
Hsp92I GRCGYC 2 cut(s) 292, 774
Hsp92II CATG 8 cut(s) 23, 116, 190, 271, 654, 751, 848, 915
HspAI GCGC 3 cut(s) 78, 676, 678
KpnI GGTACC 2 cut(s) 346, 834
KspI CCGCGG 1 cut(s) 456
Kzo9I GATC 3 cut(s) 418, 501, 727
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 3 cut(s) 416, 473, 667
LweI GCATC 2 cut(s) 68, 258
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 2 cut(s) 375, 660
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 4 cut(s) 403, 542, 563, 850
MalI GATC 3 cut(s) 420, 503, 729
MboI GATC 3 cut(s) 418, 501, 727
MboII GAAGA 5 cut(s) 84, 290, 626, 890, 916
MlsI TGGCCA 2 cut(s) 314, 746
MluCI AATT 6 cut(s) 107, 257, 603, 634, 907, 948
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 2 cut(s) 314, 746
MmeI TCCRAC 2 cut(s) 395, 663
MnlI CCTC 5 cut(s) 162, 282, 331, 343, 381
Mox20I TGGCCA 2 cut(s) 314, 746
MroXI GAANNNNTTC 1 cut(s) 789
MscI TGGCCA 2 cut(s) 314, 746
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 2 cut(s) 314, 746
MspA1I CMGCKG 3 cut(s) 455, 464, 780
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 149, 561
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 5 cut(s) 78, 141, 455, 612, 678
MwoI GCNNNNNNNGC 9 cut(s) 65, 86, 438, 452, 461, 660, 773, 854, 998
NciI CCSGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 973
NdeII GATC 3 cut(s) 418, 501, 727
NlaIII CATG 8 cut(s) 23, 116, 190, 271, 654, 751, 848, 915
NlaIV GGNNCC 3 cut(s) 344, 832, 886
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 654
PauI GCGCGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 789
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 3 cut(s) 431, 463, 682
Psp6I CCWGG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 3 cut(s) 344, 832, 886
PspPI GGNCC 1 cut(s) 444
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PstI CTGCAG 1 cut(s) 434
PteI GCGCGC 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 298, 344, 361, 832
RsaNI GTAC 4 cut(s) 297, 343, 360, 831
RseI CAYNNNNRTG 1 cut(s) 185
SacII CCGCGG 1 cut(s) 456
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 3 cut(s) 430, 462, 681
Sau3AI GATC 3 cut(s) 418, 501, 727
Sau96I GGNCC 1 cut(s) 444
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 149, 561
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 2 cut(s) 68, 258
SfcI CTRYAG 3 cut(s) 54, 430, 465
Sfr303I CCGCGG 1 cut(s) 456
SgrBI CCGCGG 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 63, 734
SmoI CTYRAG 2 cut(s) 63, 734
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 6 cut(s) 107, 257, 603, 634, 907, 948
SsiI CCGC 4 cut(s) 76, 453, 455, 780
SspMI CTAG 2 cut(s) 375, 660
StyD4I CCNGG 2 cut(s) 147, 559
TaaI ACNGT 4 cut(s) 55, 155, 644, 803
TaiI ACGT 1 cut(s) 926
TasI AATT 6 cut(s) 107, 257, 603, 634, 907, 948
TatI WGTACW 1 cut(s) 359
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 3 cut(s) 160, 439, 649
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 429, 461, 680
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 9 cut(s) 16, 28, 175, 237, 291, 588, 714, 900, 917
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 3 cut(s) 160, 439, 649
Van91I CCANNNNNTGG 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 337
XapI RAATTY 4 cut(s) 257, 634, 907, 948
XceI RCATGY 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 375, 660
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.