MD16G1031600.v1.1

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000341
Physical Location & Seq
Reverse (-)
2243695 .. 2244815
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1031600.v1.1.491

Sequence Viewer

Length: 486 bp
ATGACCCATGAAGAATTTCTCAGACATCATACTGTATACAAGAAGCCCACCGAATCAACCTCATCCGCAGATGCATCTTTTACGTACAAAAACCTAAGCCTGACGGATGTTCCCCCAAGCATTGACTGGAGGGAGCAACAAGGAGCTGTTACTCCTGTAAAAGATCAAGGGCTCTGTGGTTGTTGCTGGGCATTTTCTGCAGTGGCAGCAGTCGAAGGGATTACCAAAATCAAAATTGGCAACTTGATCTCACTGTCTGAGCAACAATTTGTGAGCTGTGATACAAGTAACTCCGGCTGCGATGGTGGTAACATGGCTAACGCCTTTGCATACATTCAACAAAACGGAGGAATTGCCAGTGAAGCAAATTACTCATACCAGAGTTCGGATGGAAGTTCAGGAACATGTGATATGAACCTGGCAAATGAGGCTGCTGCCAAGATAACTAATTATGCAGGGGTACCTCGCACGTACTCATTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

162

Amino Acids

17.23

Weight (kDa)

4.88

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 37 - 156 1e-40 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 3 cut(s) 86, 462, 473
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 2 cut(s) 146, 276
AluI AGCT 2 cut(s) 146, 276
ApeKI GCWGC 4 cut(s) 206, 297, 431, 434
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 218, 284, 418, 421
BccI CCATC 2 cut(s) 296, 383
BciT130I CCWGG 1 cut(s) 419
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 4 cut(s) 207, 298, 432, 435
BlsI GCNGC 4 cut(s) 208, 299, 433, 436
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 61, 83
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 95
BsaAI YACGTR 2 cut(s) 84, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 2 cut(s) 131, 357
BseBI CCWGG 1 cut(s) 419
BseGI GGATG 3 cut(s) 62, 112, 394
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 34, 249
BseNI ACTGG 2 cut(s) 131, 357
BseXI GCAGC 4 cut(s) 218, 284, 418, 421
BseYI CCCAGC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 460
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 163, 246
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 33, 250
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 460
BsrI ACTGG 2 cut(s) 131, 357
BssMI GATC 2 cut(s) 163, 246
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 34, 255
BstAPI GCANNNNNTGC 1 cut(s) 197
BstBAI YACGTR 2 cut(s) 84, 471
BstDEI CTNAG 3 cut(s) 20, 95, 258
BstF5I GGATG 3 cut(s) 62, 112, 394
BstKTI GATC 2 cut(s) 166, 249
BstMBI GATC 2 cut(s) 163, 246
BstMWI GCNNNNNNNGC 4 cut(s) 197, 206, 362, 428
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 198
BstSNI TACGTA 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 218, 284, 418, 421
BstZ17I GTATAC 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 62, 112, 394
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 207, 251, 364
Csp6I GTAC 3 cut(s) 85, 461, 472
CviAII CATG 3 cut(s) 8, 313, 405
CviJI RGCY 8 cut(s) 46, 99, 146, 172, 276, 297, 317, 431
CviKI_1 RGCY 8 cut(s) 46, 99, 146, 172, 276, 297, 317, 431
CviQI GTAC 3 cut(s) 85, 461, 472
DdeI CTNAG 3 cut(s) 20, 95, 258
DpnI GATC 2 cut(s) 165, 248
DpnII GATC 2 cut(s) 163, 246
Eco105I TACGTA 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 3 cut(s) 11, 316, 408
FatI CATG 3 cut(s) 7, 312, 404
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 4 cut(s) 207, 298, 432, 435
FokI GGATG 3 cut(s) 49, 119, 401
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 207, 298, 432, 435
GluI GCNGC 4 cut(s) 207, 298, 432, 435
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 148
HapII CCGG 1 cut(s) 294
Hin1II CATG 3 cut(s) 11, 316, 408
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 23, 259, 388
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 34, 255
HpyCH4IV ACGT 2 cut(s) 83, 470
HpyCH4V TGCA 4 cut(s) 74, 200, 329, 455
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 206, 362, 428
HpyF3I CTNAG 3 cut(s) 20, 95, 258
HpySE526I ACGT 2 cut(s) 83, 470
Hsp92II CATG 3 cut(s) 11, 316, 408
KpnI GGTACC 1 cut(s) 464
Kzo9I GATC 2 cut(s) 163, 246
LmnI GCTCC 2 cut(s) 133, 143
Lsp1109I GCAGC 4 cut(s) 218, 284, 418, 421
LweI GCATC 2 cut(s) 61, 83
MaeII ACGT 2 cut(s) 83, 470
MaeIII GTNAC 3 cut(s) 148, 287, 308
MalI GATC 2 cut(s) 165, 248
MboI GATC 2 cut(s) 163, 246
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 6 cut(s) 14, 234, 266, 351, 367, 448
MnlI CCTC 5 cut(s) 70, 123, 341, 421, 474
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 15
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 197, 206, 362, 428
NdeII GATC 2 cut(s) 163, 246
NlaIII CATG 3 cut(s) 11, 316, 408
NlaIV GGNNCC 1 cut(s) 462
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 408
PciI ACATGT 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 4 cut(s) 208, 299, 433, 436
Ppu21I YACGTR 2 cut(s) 84, 471
PscI ACATGT 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 3 cut(s) 86, 462, 473
RsaNI GTAC 3 cut(s) 85, 461, 472
SatI GCNGC 4 cut(s) 207, 298, 432, 435
Sau3AI GATC 2 cut(s) 163, 246
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 62, 86, 96, 148, 278, 420, 466, 473
SfaNI GCATC 2 cut(s) 61, 83
SfcI CTRYAG 1 cut(s) 198
SnaBI TACGTA 1 cut(s) 84
Sse9I AATT 6 cut(s) 14, 234, 266, 351, 367, 448
SsiI CCGC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 34, 255
TaiI ACGT 2 cut(s) 86, 473
TaqI TCGA 1 cut(s) 213
TasI AATT 6 cut(s) 14, 234, 266, 351, 367, 448
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 3 cut(s) 207, 258, 364
TseI GCWGC 4 cut(s) 206, 297, 431, 434
TspDTI ATGAA 2 cut(s) 24, 428
TspGWI ACGGA 2 cut(s) 119, 360
TspRI CASTG 3 cut(s) 207, 258, 364
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 2 cut(s) 123, 386
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.