Rroxscaffold_1G00012970

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000341
Physical Location & Seq
Reverse (-)
15956396 .. 15957534
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012970.1

Sequence Viewer

Length: 921 bp
ATGGATTTCAAAAGAAACCATGTGATCAGTGCCATATTCATCATCTTAGGGCATTTGGCTTCTCAAGCCACATCCGATGCATTGTACGAATCTTCCATTGCCGAAAAACATGAGCAATGGATGGCAAAGCATGGACGCGTTTACGCCAATGCGGCAGAGAAGGAAAGGCGTTTTGGCATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGGGACTAAGACTTACAACTACCAAAGCTTGGCTGCTACTGATATTCCAACTACCGTGGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGTATCAAAGTCAATGCGGTGCTTGCTGGGCATTTGCAGTAGCAGCAACTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCCGAGCAGCAACTTGTGGACTGCAGTCATCAGGACAATGGGTGCAAGGGTGGTTACTTAGAATACGCCTATTCCTACGTAGCACAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGGCAACAGACATGGGAACATGCGATACTAACATGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAACGCGTCCCTTCCAGAAGTGAAAACGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGGTTACCATTTCTGCTTATGGACGAGATTTTCAGATGTACGGCAGTGGGGTGTTCTCCGGCTATTGTGGGACGGAGCTCGACCACGCCGTCACGGTCATTGGCTACGGGACGATTGAAGATGGAACCCCCTATTGGTTAATAAAGAACTCATGGGGGCAGAGTTGGGGTGAAAATGGGTATATGAGAATTCTTAGAAACATTAATGCCCCAGAGGGTATGTGCGGCCTTGCTATCAATCCCCTCTATCCGACTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

306

Amino Acids

34.06

Weight (kDa)

5.32

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 81 1.8e-11 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 89 - 304 3.4e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 749
AccB7I CCANNNNNTGG 1 cut(s) 250
AccII CGCG 2 cut(s) 138, 606
AciI CCGC 4 cut(s) 152, 330, 581, 885
AcoI YGGCCR 2 cut(s) 391, 645
AcsI RAATTY 1 cut(s) 849
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 3 cut(s) 86, 530, 701
AfiI CCNNNNNNNGG 4 cut(s) 250, 282, 532, 795
AflIII ACRYGT 2 cut(s) 136, 604
AgsI TTSAA 3 cut(s) 10, 214, 779
AjnI CCWGG 1 cut(s) 531
AjuI GAANNNNNNNTTGG 4 cut(s) 156, 188, 778, 810
AluBI AGCT 3 cut(s) 249, 299, 739
AluI AGCT 3 cut(s) 249, 299, 739
Alw21I GWGCWC 1 cut(s) 741
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 391, 645, 886
ApeKI GCWGC 3 cut(s) 254, 356, 415
ApoI RAATTY 1 cut(s) 849
AseI ATTAAT 1 cut(s) 864
AsuHPI GGTGA 2 cut(s) 295, 842
BalI TGGCCA 1 cut(s) 647
BanII GRGCYC 1 cut(s) 741
BauI CACGAG 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 241, 368, 427
BccI CCATC 2 cut(s) 115, 776
BceAI ACGGC 2 cut(s) 718, 734
BciT130I CCWGG 1 cut(s) 533
BclI TGATCA 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 430, 632
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 6 cut(s) 153, 255, 357, 416, 582, 886
BlsI GCNGC 6 cut(s) 154, 256, 358, 417, 583, 887
Bme1390I CCNGG 1 cut(s) 533
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 67, 186
BoxI GACNNNNGTC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 48
BsaAI YACGTR 2 cut(s) 202, 487
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 282, 532, 795
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 3 cut(s) 287, 598, 656
Bse3DI GCAATG 2 cut(s) 96, 122
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 71, 126
BseLI CCNNNNNNNGG 4 cut(s) 250, 282, 532, 795
BseMI GCAATG 2 cut(s) 96, 122
BseNI ACTGG 3 cut(s) 287, 598, 656
BseXI GCAGC 3 cut(s) 241, 368, 427
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 2 cut(s) 138, 606
BshFI GGCC 3 cut(s) 393, 647, 888
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 2 cut(s) 390, 720
BslFI GGGAC 4 cut(s) 238, 593, 745, 784
BslI CCNNNNNNNGG 4 cut(s) 250, 282, 532, 795
BsmFI GGGAC 4 cut(s) 238, 593, 745, 784
BsnI GGCC 3 cut(s) 393, 647, 888
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 4 cut(s) 24, 399, 588, 628
BspACI CCGC 4 cut(s) 152, 330, 581, 885
BspANI GGCC 3 cut(s) 393, 647, 888
BspFNI CGCG 2 cut(s) 138, 606
BspLI GGNNCC 1 cut(s) 787
BspMAI CTGCAG 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 96, 122
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 3 cut(s) 287, 598, 656
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 4 cut(s) 24, 399, 588, 628
BssSI CACGAG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 3 cut(s) 277, 364, 757
BstBAI YACGTR 2 cut(s) 202, 487
BstC8I GCNNGC 2 cut(s) 337, 579
BstDEI CTNAG 4 cut(s) 46, 228, 466, 854
BstDSI CCRYGG 1 cut(s) 276
BstEII GGTNACC 1 cut(s) 664
BstF5I GGATG 2 cut(s) 71, 126
BstFNI CGCG 2 cut(s) 138, 606
BstKTI GATC 4 cut(s) 27, 402, 591, 631
BstMBI GATC 4 cut(s) 24, 399, 588, 628
BstMWI GCNNNNNNNGC 6 cut(s) 65, 152, 336, 341, 356, 603
BstNI CCWGG 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 555, 581
BstPAI GACNNNNGTC 1 cut(s) 432
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 531
BstSFI CTRYAG 2 cut(s) 430, 632
BstSNI TACGTA 1 cut(s) 487
BstUI CGCG 2 cut(s) 138, 606
BstV1I GCAGC 3 cut(s) 241, 368, 427
BsuRI GGCC 3 cut(s) 393, 647, 888
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 71, 126
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 3 cut(s) 34, 591, 712
Cac8I GCNNGC 2 cut(s) 337, 579
CaiI CAGNNNCTG 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 389
CseI GACGC 2 cut(s) 144, 595
Csp6I GTAC 3 cut(s) 85, 529, 700
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 9 cut(s) 20, 110, 131, 544, 552, 565, 578, 649, 813
CviQI GTAC 3 cut(s) 85, 529, 700
DdeI CTNAG 4 cut(s) 46, 228, 466, 854
DpnI GATC 4 cut(s) 26, 401, 590, 630
DpnII GATC 4 cut(s) 24, 399, 588, 628
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 2 cut(s) 391, 645
Ecl136II GAGCTC 1 cut(s) 739
Eco105I TACGTA 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 166
Eco91I GGTNACC 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 739
EcoO65I GGTNACC 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 849
EcoRII CCWGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 741
FaeI CATG 9 cut(s) 23, 113, 134, 547, 555, 568, 581, 652, 816
FaqI GGGAC 4 cut(s) 238, 593, 745, 784
FatI CATG 9 cut(s) 19, 109, 130, 543, 551, 564, 577, 648, 812
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 153, 255, 357, 416, 582, 886
FokI GGATG 2 cut(s) 58, 133
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 6 cut(s) 153, 255, 357, 416, 582, 886
GluI GCNGC 6 cut(s) 153, 255, 357, 416, 582, 886
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 3 cut(s) 393, 647, 888
HapII CCGG 2 cut(s) 390, 720
HgaI GACGC 2 cut(s) 144, 595
Hin1II CATG 9 cut(s) 23, 113, 134, 547, 555, 568, 581, 652, 816
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 2 cut(s) 89, 504
HpaII CCGG 2 cut(s) 390, 720
HphI GGTGA 2 cut(s) 295, 842
Hpy166II GTNNAC 3 cut(s) 142, 280, 427
Hpy188I TCNGA 4 cut(s) 76, 412, 696, 912
Hpy188III TCNNGA 4 cut(s) 184, 440, 512, 615
Hpy8I GTNNAC 3 cut(s) 142, 280, 427
HpyAV CCTTC 5 cut(s) 154, 215, 362, 621, 631
HpyCH4III ACNGT 3 cut(s) 277, 364, 757
HpyCH4IV ACGT 2 cut(s) 201, 486
HpyCH4V TGCA 5 cut(s) 80, 350, 432, 453, 652
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 152, 336, 341, 356, 603
HpyF3I CTNAG 4 cut(s) 46, 228, 466, 854
HpySE526I ACGT 2 cut(s) 201, 486
Hsp92II CATG 9 cut(s) 23, 113, 134, 547, 555, 568, 581, 652, 816
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 4 cut(s) 24, 399, 588, 628
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 3 cut(s) 241, 368, 427
LweI GCATC 2 cut(s) 67, 186
MaeII ACGT 2 cut(s) 201, 486
MaeIII GTNAC 4 cut(s) 301, 461, 664, 751
MalI GATC 4 cut(s) 26, 401, 590, 630
MboI GATC 4 cut(s) 24, 399, 588, 628
MboII GAAGA 5 cut(s) 84, 172, 199, 527, 791
MfeI CAATTG 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 2 cut(s) 395, 849
MluI ACGCGT 2 cut(s) 136, 604
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 4 cut(s) 279, 494, 868, 914
Mox20I TGGCCA 1 cut(s) 647
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 647
MseI TTAA 2 cut(s) 800, 864
Msp20I TGGCCA 1 cut(s) 647
MspI CCGG 2 cut(s) 390, 720
MspR9I CCNGG 1 cut(s) 533
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 2 cut(s) 138, 606
MwoI GCNNNNNNNGC 6 cut(s) 65, 152, 336, 341, 356, 603
NdeII GATC 4 cut(s) 24, 399, 588, 628
NlaIII CATG 9 cut(s) 23, 113, 134, 547, 555, 568, 581, 652, 816
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 301, 751
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 2 cut(s) 555, 581
PaeI GCATGC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 6 cut(s) 154, 256, 358, 417, 583, 887
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
Ppu21I YACGTR 2 cut(s) 202, 487
PshAI GACNNNNGTC 1 cut(s) 432
PshBI ATTAAT 1 cut(s) 864
Psp124BI GAGCTC 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 531
PspEI GGTNACC 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 1 cut(s) 787
PsrI GAACNNNNNNTAC 2 cut(s) 541, 573
PstI CTGCAG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 86, 530, 701
RsaNI GTAC 3 cut(s) 85, 529, 700
SacI GAGCTC 1 cut(s) 741
SaqAI TTAA 2 cut(s) 800, 864
SatI GCNGC 6 cut(s) 153, 255, 357, 416, 582, 886
Sau3AI GATC 4 cut(s) 24, 399, 588, 628
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 1 cut(s) 741
SetI ASST 5 cut(s) 204, 251, 301, 489, 741
SfaNI GCATC 2 cut(s) 67, 186
SfcI CTRYAG 2 cut(s) 430, 632
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 581
Sse9I AATT 2 cut(s) 395, 849
SsiI CCGC 4 cut(s) 152, 330, 581, 885
SstI GAGCTC 1 cut(s) 741
StyD4I CCNGG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 277, 364, 757
TaiI ACGT 2 cut(s) 204, 489
TaqI TCGA 2 cut(s) 195, 741
TasI AATT 2 cut(s) 395, 849
TauI GCSGC 3 cut(s) 155, 584, 888
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 800, 864
Tru9I TTAA 2 cut(s) 800, 864
TscAI CASTG 3 cut(s) 34, 598, 712
TseFI GTSAC 2 cut(s) 301, 751
TseI GCWGC 3 cut(s) 254, 356, 415
Tsp45I GTSAC 2 cut(s) 301, 751
TspDTI ATGAA 3 cut(s) 28, 234, 615
TspGWI ACGGA 2 cut(s) 513, 749
TspRI CASTG 3 cut(s) 34, 598, 712
Van91I CCANNNNNTGG 1 cut(s) 250
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 1 cut(s) 849
XceI RCATGY 2 cut(s) 555, 581
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.