pycom10g23520

Zingipain-2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
25641798 .. 25642438
641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23520.1

Sequence Viewer

Length: 465 bp
ATGGCTTTTGAAAGAAACCTTTTGATTGTTACCATACTCATCACCTTGGGGACCTTGGCATCTGAAGCCACGTCTCGCACATTGTACCAAGCTTCCATTGCTACAAAACATGAGCAGTGGATGAAAAAGCATGGACGCGTTTACCAGGACAGCGCGGAGAAGGAAAGGCGTTTCCAGATTTTCAAAAACAATGTGGAGTTTGTCGAGAAATTCAACAGTGAAGGGAACATGACTTACAGCCTATGCATCAACCGATTTTCGGATATGACCTATGATGAATTCCTCAGGCATTATACTGGATACAAGCAGCCCACTGAATCAACCTCATCCGCAGCTGCATCTTTTACATACGAAAACCTAAGCCCAGCTGATGTTCCCCAAAGCATTGACTGGAGGGAGAAGAGAGCAGTTACTCCAGTAAAATTTCAAGGGAGCTGTGTACCCAAATCAAAACTGGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.71

Weight (kDa)

8.85

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 94 2.2e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 138, 155
AciI CCGC 2 cut(s) 155, 330
AcsI RAATTY 3 cut(s) 209, 278, 422
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 86, 441
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 11, 184, 214, 428
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 4 cut(s) 92, 335, 368, 435
AluI AGCT 4 cut(s) 92, 335, 368, 435
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 307, 332, 335
ApoI RAATTY 3 cut(s) 209, 278, 422
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 284
BbvI GCAGC 3 cut(s) 319, 322, 344
BciT130I CCWGG 1 cut(s) 146
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 78
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 3 cut(s) 308, 333, 336
BlsI GCNGC 3 cut(s) 309, 334, 337
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 51
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 68, 255, 347
BpmI CTGGAG 2 cut(s) 399, 412
Bpu10I CCTNAGC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 45, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 4 cut(s) 301, 395, 416, 459
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 45, 54
BseGI GGATG 2 cut(s) 126, 326
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 4 cut(s) 301, 395, 416, 459
BseXI GCAGC 3 cut(s) 319, 322, 344
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 2 cut(s) 138, 155
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 64
BspACI CCGC 2 cut(s) 155, 330
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 2 cut(s) 138, 155
BspLI GGNNCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 4 cut(s) 301, 395, 416, 459
BssECI CCNNGG 2 cut(s) 45, 54
BssT1I CCWWGG 2 cut(s) 45, 54
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 284, 359
BstF5I GGATG 2 cut(s) 126, 326
BstFNI CGCG 2 cut(s) 138, 155
BstHHI GCGC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 65, 98
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 2 cut(s) 138, 155
BstV1I GCAGC 3 cut(s) 319, 322, 344
Bsu36I CCTNAGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 293
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 126, 326
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 3 cut(s) 122, 223, 312
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 85, 440
CviAII CATG 3 cut(s) 110, 131, 229
CviJI RGCY 9 cut(s) 5, 68, 92, 240, 310, 335, 363, 368, 435
CviKI_1 RGCY 9 cut(s) 5, 68, 92, 240, 310, 335, 363, 368, 435
CviQI GTAC 2 cut(s) 85, 440
DdeI CTNAG 2 cut(s) 284, 359
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 45, 54
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 45, 54
EcoT22I ATGCAT 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 45, 54
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 3 cut(s) 113, 134, 232
FaiI YATR 9 cut(s) 35, 111, 132, 230, 244, 266, 273, 294, 349
FaqI GGGAC 1 cut(s) 64
FatI CATG 3 cut(s) 109, 130, 228
Fnu4HI GCNGC 3 cut(s) 308, 333, 336
FokI GGATG 2 cut(s) 133, 313
Fsp4HI GCNGC 3 cut(s) 308, 333, 336
GlaI GCGC 1 cut(s) 154
GluI GCNGC 3 cut(s) 308, 333, 336
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 2 cut(s) 399, 412
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 155
Hin1II CATG 3 cut(s) 113, 134, 232
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 317
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 142, 440
Hpy188I TCNGA 2 cut(s) 64, 262
Hpy188III TCNNGA 2 cut(s) 175, 205
Hpy8I GTNNAC 2 cut(s) 142, 440
HpyAV CCTTC 2 cut(s) 154, 215
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 246, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 98
HpyF3I CTNAG 2 cut(s) 284, 359
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 3 cut(s) 113, 134, 232
HspAI GCGC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 9 cut(s) 131, 158, 188, 271, 282, 376, 378, 429, 440
Lsp1109I GCAGC 3 cut(s) 319, 322, 344
LweI GCATC 3 cut(s) 68, 255, 347
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 28, 409
MboII GAAGA 1 cut(s) 412
MluCI AATT 4 cut(s) 209, 278, 422, 460
MluI ACGCGT 1 cut(s) 136
MnlI CCTC 3 cut(s) 293, 334, 387
Mph1103I ATGCAT 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 335, 368
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 138, 155
MwoI GCNNNNNNNGC 2 cut(s) 65, 98
NlaIII CATG 3 cut(s) 113, 134, 232
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 248
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 309, 334, 337
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PvuII CAGCTG 2 cut(s) 335, 368
RsaI GTAC 2 cut(s) 86, 441
RsaNI GTAC 2 cut(s) 85, 440
SatI GCNGC 3 cut(s) 308, 333, 336
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 146
SfaNI GCATC 3 cut(s) 68, 255, 347
SinI GGWCC 1 cut(s) 51
Sse9I AATT 4 cut(s) 209, 278, 422, 460
SsiI CCGC 2 cut(s) 155, 330
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 45, 54
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 204
TasI AATT 4 cut(s) 209, 278, 422, 460
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 3 cut(s) 122, 223, 319
TseI GCWGC 3 cut(s) 307, 332, 335
TspDTI ATGAA 2 cut(s) 137, 291
TspRI CASTG 3 cut(s) 122, 223, 319
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 3 cut(s) 209, 278, 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.