Rorug05G0145700

cysteine-type peptidase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
13521137 .. 13521386
250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0145700.1

Sequence Viewer

Length: 216 bp
ATGCCTTTCATAATTGCCATAGCCACCTGGCCCTCCTCATCCAATCATTCTAATCAGGAGGCTGTTGCAATAAGGAAGAGAAACAAGTATGATCAAATTAAGTTCTTGATTCCTCTCATCTACGCCCCTGTTCTTCCCCTCATTCGGCTCACACTGCGAAAGAATCCGGTTGTTGTCTTGCGTTTTGGAAATCATGCATACAATTATAGAAATTAA
Functional Annotation

Protein Analysis

71

Amino Acids

8.26

Weight (kDa)

10.71

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 26
AoxI GGCC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 1 cut(s) 31
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 30
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 23, 31, 62, 148
CviKI_1 RGCY 4 cut(s) 23, 31, 62, 148
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 1 cut(s) 197
FaiI YATR 6 cut(s) 11, 20, 90, 195, 199, 207
FatI CATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 91
FokI GGATG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 197
HinfI GANTC 2 cut(s) 109, 163
HpaII CCGG 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 56, 106
HpyCH4V TGCA 2 cut(s) 68, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 13, 40, 41, 141, 180
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 88, 125
MluCI AATT 4 cut(s) 12, 96, 202, 211
MnlI CCTC 5 cut(s) 43, 46, 52, 123, 149
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 2 cut(s) 99, 214
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 199
PfeI GAWTC 2 cut(s) 109, 163
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspPI GGNCC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 99, 214
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 28
SetI ASST 1 cut(s) 29
SgeI CNNG 9 cut(s) 39, 40, 68, 97, 118, 140, 179, 190, 206
Sse9I AATT 4 cut(s) 12, 96, 202, 211
StyD4I CCNGG 1 cut(s) 26
TasI AATT 4 cut(s) 12, 96, 202, 211
TfiI GAWTC 2 cut(s) 109, 163
Tru1I TTAA 2 cut(s) 99, 214
Tru9I TTAA 2 cut(s) 99, 214
TscAI CASTG 1 cut(s) 159
TspRI CASTG 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.