Rw5G022090

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000341
Physical Location & Seq
Reverse (-)
30267654 .. 30268798
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022090.1

Sequence Viewer

Length: 939 bp
ATGGCTTTTCAACGCATTAACCTTGTGTTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCCCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCAATGGAAGGCAAAGCACGGACGCGTTTACCCCAATGCGACAGAGAAGAAAAGACGTTTCGACATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAGTGAAGCGAATAAGACTTACAAGTTGAACATCAACAACTACCAAAGCTTGCCTGCTGCTGATATTCCTACTAGCGTGGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGGATCAAAAAACATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCCGAGCAGCAACTTGTGGACTGCGATCATCAAAACAATGGGTGCGGCGGTGGTGACTTAAAACGCGCCTATAACTACGTAAAGGAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGGGAACAGACATGGGAACATGCGATACTAACAAGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAAAGCGTCCCTTCCAAAAGTGAAAACGATCTACAGAAAGCTGTGGCCATGCAACCAGTATCGGTTGGCATAGAATCTTCTGGACAAGATCTTAAGATGTACGACGGTGGGGTGTTCTCCGGCGACTGTGGGACGGACCTCGACCACGCCATCACGGCCATTGGCTATGGGACGACTGAAGATGGAATCCCCTATTGGTTAATGAAGAACTCATGGGGGGAGGATTGGGGTGAAAGTGGGTATATGAGAATTCTTAGAAACAGTGATGCCCCAGAGGGTATGTGCGGCCTTGCTCTGTATCCCGTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

312

Amino Acids

34.51

Weight (kDa)

5.26

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 87 2.5e-12 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 95 - 310 4e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 141, 492
AciI CCGC 5 cut(s) 348, 471, 474, 599, 903
AclWI GGATC 1 cut(s) 342
AcoI YGGCCR 3 cut(s) 409, 663, 774
AcsI RAATTY 1 cut(s) 867
AcuI CTGAAG 2 cut(s) 169, 816
AfaI GTAC 2 cut(s) 548, 719
AfiI CCNNNNNNNGG 3 cut(s) 331, 550, 551
AflII CTTAAG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 3 cut(s) 11, 217, 247
AjnI CCWGG 1 cut(s) 549
AjuI GAANNNNNNNTTGG 2 cut(s) 796, 828
AluBI AGCT 5 cut(s) 95, 267, 317, 380, 659
AluI AGCT 5 cut(s) 95, 267, 317, 380, 659
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 4 cut(s) 409, 663, 774, 904
ApeKI GCWGC 4 cut(s) 275, 374, 377, 433
ApoI RAATTY 1 cut(s) 867
AspLEI GCGC 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 754
AsuHPI GGTGA 3 cut(s) 313, 491, 860
AvaII GGWCC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 665
BauI CACGAG 1 cut(s) 528
BbvI GCAGC 4 cut(s) 262, 386, 389, 445
BccI CCATC 2 cut(s) 776, 794
BceAI ACGGC 1 cut(s) 789
BciT130I CCWGG 1 cut(s) 551
BciVI GTATCC 1 cut(s) 927
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 650
BfrI CTTAAG 1 cut(s) 710
BfuI GTATCC 1 cut(s) 927
BglI GCCNNNNNGGC 1 cut(s) 773
BglII AGATCT 1 cut(s) 706
BisI GCNGC 7 cut(s) 276, 375, 378, 434, 472, 600, 904
BlsI GCNGC 7 cut(s) 277, 376, 379, 435, 473, 601, 905
Bme1390I CCNGG 1 cut(s) 551
Bme18I GGWCC 1 cut(s) 754
BmgT120I GGNCC 1 cut(s) 754
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 1 cut(s) 874
BpmI CTGGAG 1 cut(s) 322
BsaAI YACGTR 2 cut(s) 205, 505
BsaJI CCNNGG 2 cut(s) 48, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 550, 551
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 3 cut(s) 305, 616, 674
Bse3DI GCAATG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 48, 550
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 3 cut(s) 331, 550, 551
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 3 cut(s) 305, 616, 674
BseXI GCAGC 4 cut(s) 262, 386, 389, 445
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 141, 492
BshFI GGCC 4 cut(s) 411, 665, 776, 906
BsiSI CCGG 2 cut(s) 408, 738
BslFI GGGAC 4 cut(s) 67, 611, 763, 802
BslI CCNNNNNNNGG 3 cut(s) 331, 550, 551
BsmFI GGGAC 4 cut(s) 67, 611, 763, 802
BsnI GGCC 4 cut(s) 411, 665, 776, 906
Bsp143I GATC 6 cut(s) 334, 417, 451, 606, 646, 706
BspACI CCGC 5 cut(s) 348, 471, 474, 599, 903
BspANI GGCC 4 cut(s) 411, 665, 776, 906
BspFNI CGCG 2 cut(s) 141, 492
BspPI GGATC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 3 cut(s) 305, 616, 674
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 48, 550
BssMI GATC 6 cut(s) 334, 417, 451, 606, 646, 706
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 5 cut(s) 221, 370, 725, 746, 881
BstAFI CTTAAG 1 cut(s) 710
BstBAI YACGTR 2 cut(s) 205, 505
BstC8I GCNNGC 4 cut(s) 269, 273, 355, 597
BstDEI CTNAG 1 cut(s) 872
BstF5I GGATG 1 cut(s) 74
BstFNI CGCG 2 cut(s) 141, 492
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 6 cut(s) 337, 420, 454, 609, 649, 709
BstMBI GATC 6 cut(s) 334, 417, 451, 606, 646, 706
BstMWI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 359, 621, 773
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 3 cut(s) 348, 573, 599
BstSCI CCNGG 1 cut(s) 549
BstSFI CTRYAG 1 cut(s) 650
BstSNI TACGTA 1 cut(s) 505
BstUI CGCG 2 cut(s) 141, 492
BstV1I GCAGC 4 cut(s) 262, 386, 389, 445
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BsuI GTATCC 1 cut(s) 927
BsuRI GGCC 4 cut(s) 411, 665, 776, 906
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 3 cut(s) 226, 609, 886
Cac8I GCNNGC 4 cut(s) 269, 273, 355, 597
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 754
CseI GACGC 2 cut(s) 147, 613
Csp6I GTAC 2 cut(s) 547, 718
CviAII CATG 8 cut(s) 68, 113, 345, 562, 570, 596, 667, 831
CviQI GTAC 2 cut(s) 547, 718
DdeI CTNAG 1 cut(s) 872
DpnI GATC 6 cut(s) 336, 419, 453, 608, 648, 708
DpnII GATC 6 cut(s) 334, 417, 451, 606, 646, 706
EaeI YGGCCR 3 cut(s) 409, 663, 774
Eco105I TACGTA 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 754
Eco57I CTGAAG 2 cut(s) 169, 816
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 8 cut(s) 71, 116, 348, 565, 573, 599, 670, 834
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 613, 645
FaqI GGGAC 4 cut(s) 67, 611, 763, 802
FatI CATG 8 cut(s) 67, 112, 344, 561, 569, 595, 666, 830
Fnu4HI GCNGC 7 cut(s) 276, 375, 378, 434, 472, 600, 904
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 7 cut(s) 276, 375, 378, 434, 472, 600, 904
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 493
GluI GCNGC 7 cut(s) 276, 375, 378, 434, 472, 600, 904
GsaI CCCAGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 4 cut(s) 411, 665, 776, 906
HapII CCGG 2 cut(s) 408, 738
HgaI GACGC 2 cut(s) 147, 613
HhaI GCGC 1 cut(s) 494
Hin1II CATG 8 cut(s) 71, 116, 348, 565, 573, 599, 670, 834
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HindIII AAGCTT 2 cut(s) 93, 265
HinfI GANTC 3 cut(s) 522, 692, 804
HpaII CCGG 2 cut(s) 408, 738
HphI GGTGA 3 cut(s) 313, 491, 860
Hpy166II GTNNAC 3 cut(s) 145, 298, 445
Hpy188I TCNGA 2 cut(s) 430, 930
Hpy188III TCNNGA 3 cut(s) 187, 530, 699
Hpy8I GTNNAC 3 cut(s) 145, 298, 445
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 3 cut(s) 118, 380, 639
HpyCH4III ACNGT 5 cut(s) 221, 370, 725, 746, 881
HpyCH4IV ACGT 3 cut(s) 172, 204, 504
HpyCH4V TGCA 2 cut(s) 670, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 359, 621, 773
HpyF3I CTNAG 1 cut(s) 872
HpySE526I ACGT 3 cut(s) 172, 204, 504
Hsp92II CATG 8 cut(s) 71, 116, 348, 565, 573, 599, 670, 834
HspAI GCGC 1 cut(s) 492
Kzo9I GATC 6 cut(s) 334, 417, 451, 606, 646, 706
Lsp1109I GCAGC 4 cut(s) 262, 386, 389, 445
LweI GCATC 1 cut(s) 874
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 172, 204, 504
MaeIII GTNAC 2 cut(s) 319, 479
MalI GATC 6 cut(s) 336, 419, 453, 608, 648, 708
MboI GATC 6 cut(s) 334, 417, 451, 606, 646, 706
MboII GAAGA 7 cut(s) 175, 175, 202, 545, 687, 809, 835
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 706
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 2 cut(s) 413, 867
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 5 cut(s) 297, 512, 767, 832, 886
Mox20I TGGCCA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 665
MseI TTAA 4 cut(s) 18, 485, 711, 818
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 2 cut(s) 408, 738
MspR9I CCNGG 1 cut(s) 551
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 551
MvnI CGCG 2 cut(s) 141, 492
MwoI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 359, 621, 773
NdeII GATC 6 cut(s) 334, 417, 451, 606, 646, 706
NlaIII CATG 8 cut(s) 71, 116, 348, 565, 573, 599, 670, 834
NmuCI GTSAC 2 cut(s) 319, 479
NspI RCATGY 3 cut(s) 348, 573, 599
PaeI GCATGC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 692, 804
PkrI GCNGC 7 cut(s) 277, 376, 379, 435, 473, 601, 905
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
Ppu21I YACGTR 2 cut(s) 205, 505
Psp6I CCWGG 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 549
PspPI GGNCC 1 cut(s) 754
PsrI GAACNNNNNNTAC 2 cut(s) 559, 591
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 548, 719
RsaNI GTAC 2 cut(s) 547, 718
SaqAI TTAA 4 cut(s) 18, 485, 711, 818
SatI GCNGC 7 cut(s) 276, 375, 378, 434, 472, 600, 904
Sau3AI GATC 6 cut(s) 334, 417, 451, 606, 646, 706
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 1 cut(s) 551
SfaNI GCATC 1 cut(s) 874
SfcI CTRYAG 1 cut(s) 650
SinI GGWCC 1 cut(s) 754
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SnaBI TACGTA 1 cut(s) 505
SphI GCATGC 1 cut(s) 599
Sse9I AATT 2 cut(s) 413, 867
SsiI CCGC 5 cut(s) 348, 471, 474, 599, 903
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 5 cut(s) 221, 370, 725, 746, 881
TaiI ACGT 3 cut(s) 175, 207, 507
TaqI TCGA 3 cut(s) 177, 198, 759
TasI AATT 2 cut(s) 413, 867
TauI GCSGC 3 cut(s) 474, 602, 906
TfiI GAWTC 2 cut(s) 692, 804
Tru1I TTAA 4 cut(s) 18, 485, 711, 818
Tru9I TTAA 4 cut(s) 18, 485, 711, 818
TscAI CASTG 3 cut(s) 226, 616, 886
TseFI GTSAC 2 cut(s) 319, 479
TseI GCWGC 4 cut(s) 275, 374, 377, 433
Tsp45I GTSAC 2 cut(s) 319, 479
TspDTI ATGAA 5 cut(s) 31, 72, 105, 633, 836
TspGWI ACGGA 3 cut(s) 150, 531, 767
TspRI CASTG 3 cut(s) 226, 616, 886
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 754
XapI RAATTY 1 cut(s) 867
XceI RCATGY 3 cut(s) 348, 573, 599
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.