RchiOBHm_Chr5g0010261

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000341
Physical Location & Seq
Forward (+)
6798966 .. 6800305
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29104

Sequence Viewer

Length: 906 bp
ATGGCTTTGGAAGGAAACCTTGTGCTTCTCACACAGCTTGCTGTTGCCATATTATCCCTCAGTTTGTTGGGTACTTTGGCAATATCCCAGGCCACATCCCGCTCATCTTATGGAGTCAATTCCACCAACATTGCCCAAACCTTTGAGCAATGGATGGCAAAGTACGGCCGCATTTACCCTATCGGCCAGGAGAAGGGAAAACGTTCTGCCATATTCCGGACCAATTTGGAGTATGTTGAGAGCTTCAACAAACAAGAGAGTAAGACTTACAAGTTAGGCCTGAATCAATTTTCTGATATGAACAATGCAGAATATTGCCGACATCATACCGGATACAAAAGAATGCCCACCTCCTCAACCTCTTTTAGGTACCAAAACATGTCCGCTGATGATGTCCCCAATAGCATTGATTGGAGGAAACAAGGAGCTGTCACCCCTGTAAAGTATCAAGCAGGCTGTGGTTGTTGTTGGGCTTTCTCAGCGGTGGCAGCTGTGGAAGGGATTACCAAAATAAGAACTGGCCAATTGATCCCGCTATCCGAGCAACAACTTGTGGACTGCAATAGAGATATGTACAACATTGGTTGTGAGGGTGGTAATATGGTAGATGCCTTCCGGTACATCAAAACAAATGGTGGAATCACCAGCGAAGATAATTACCAATACACTGCTAGGGACGGAGCGTGTTACAGTAATAAAGAAAAACACCATGATGCCACAATAACTGGTTTTGAACAAGTGCCTCGAGGGGAAATGCATTTGCTCAAGGCTGTTTCCATGCAACCAGTCTCGGTTCACATTGATGCCCATGGAAAAGACACTACTCGAGTGGGGTATTTTCGGGAGATTGTGGAGTACGCTATTGTAGTCATCGGGTATGGAAAAACTGAAGACGACATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

301

Amino Acids

33.58

Weight (kDa)

6.66

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 48 - 105 3.6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 132 - 297 1.1e-47 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 744
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 5 cut(s) 100, 169, 384, 482, 533
AclI AACGTT 1 cut(s) 202
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 3 cut(s) 166, 184, 520
AfaI GTAC 6 cut(s) 73, 164, 371, 575, 620, 857
AfiI CCNNNNNNNGG 3 cut(s) 193, 216, 366
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 2 cut(s) 247, 734
AjnI CCWGG 2 cut(s) 87, 186
AluBI AGCT 4 cut(s) 37, 243, 428, 491
AluI AGCT 4 cut(s) 37, 243, 428, 491
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 2 cut(s) 744, 825
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 5 cut(s) 90, 166, 184, 277, 520
ApeKI GCWGC 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 424, 634
AvaI CYCGRG 2 cut(s) 744, 825
AvaII GGWCC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 897
BbvI GCAGC 1 cut(s) 500
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 89, 188
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 2 cut(s) 672, 904
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 2 cut(s) 169, 489
BlsI GCNGC 2 cut(s) 170, 490
Bme1390I CCNGG 2 cut(s) 89, 188
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 2 cut(s) 744, 825
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 2 cut(s) 89, 188
BmsI GCATC 3 cut(s) 598, 703, 793
BpiI GAAGAC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 87, 808
BsaWI WCCGGW 3 cut(s) 216, 329, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 216, 366
Bse1I ACTGG 3 cut(s) 523, 730, 785
Bse3DI GCAATG 2 cut(s) 129, 155
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 2 cut(s) 89, 188
BseDI CCNNGG 2 cut(s) 87, 808
BseGI GGATG 2 cut(s) 95, 159
BseLI CCNNNNNNNGG 3 cut(s) 193, 216, 366
BseMI GCAATG 2 cut(s) 129, 155
BseMII CTCAG 2 cut(s) 73, 492
BseNI ACTGG 3 cut(s) 523, 730, 785
BseRI GAGGAG 1 cut(s) 343
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 5 cut(s) 92, 168, 186, 279, 522
BshNI GGYRCC 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 2 cut(s) 744, 825
BsiSI CCGG 3 cut(s) 217, 330, 616
BslFI GGGAC 2 cut(s) 380, 689
BslI CCNNNNNNNGG 3 cut(s) 193, 216, 366
BsmAI GTCTC 1 cut(s) 793
BsmFI GGGAC 2 cut(s) 380, 689
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 5 cut(s) 92, 168, 186, 279, 522
BsoBI CYCGRG 2 cut(s) 744, 825
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 808
BspACI CCGC 5 cut(s) 100, 169, 384, 482, 533
BspANI GGCC 5 cut(s) 92, 168, 186, 279, 522
BspCNI CTCAG 2 cut(s) 72, 491
BspEI TCCGGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 129, 155
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 3 cut(s) 523, 730, 785
BssECI CCNNGG 2 cut(s) 87, 808
BssMI GATC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 808
Bst2UI CCWGG 2 cut(s) 89, 188
Bst4CI ACNGT 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 39, 454
BstDEI CTNAG 2 cut(s) 59, 478
BstDSI CCRYGG 1 cut(s) 808
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 95, 159
BstKTI GATC 1 cut(s) 531
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 1 cut(s) 528
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 479, 488, 541
BstNI CCWGG 2 cut(s) 89, 188
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 87, 186
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 1 cut(s) 897
BstZI CGGCCG 1 cut(s) 166
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 5 cut(s) 92, 168, 186, 279, 522
BtgI CCRYGG 1 cut(s) 808
BtsCI GGATG 2 cut(s) 95, 159
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 39, 454
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 6 cut(s) 72, 163, 370, 574, 619, 856
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 379, 710, 778, 809
CviQI GTAC 6 cut(s) 72, 163, 370, 574, 619, 856
DdeI CTNAG 2 cut(s) 59, 478
DpnI GATC 1 cut(s) 530
DpnII GATC 1 cut(s) 528
EaeI YGGCCR 3 cut(s) 166, 184, 520
EagI CGGCCG 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 808
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 744, 825
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 87, 186
EcoT14I CCWWGG 1 cut(s) 808
EcoT22I ATGCAT 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 808
FaeI CATG 4 cut(s) 382, 713, 781, 812
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 380, 689
FatI CATG 4 cut(s) 378, 709, 777, 808
FauI CCCGC 2 cut(s) 107, 540
Fnu4HI GCNGC 2 cut(s) 169, 489
FokI GGATG 2 cut(s) 82, 166
Fsp4HI GCNGC 2 cut(s) 169, 489
FspBI CTAG 2 cut(s) 672, 904
GluI GCNGC 2 cut(s) 169, 489
HaeIII GGCC 5 cut(s) 92, 168, 186, 279, 522
HapII CCGG 3 cut(s) 217, 330, 616
Hin1II CATG 4 cut(s) 382, 713, 781, 812
HinfI GANTC 3 cut(s) 114, 283, 639
HpaII CCGG 3 cut(s) 217, 330, 616
HphI GGTGA 2 cut(s) 424, 634
Hpy166II GTNNAC 2 cut(s) 556, 796
Hpy188I TCNGA 2 cut(s) 295, 541
Hpy188III TCNNGA 2 cut(s) 217, 842
Hpy8I GTNNAC 2 cut(s) 556, 796
HpyAV CCTTC 4 cut(s) 5, 187, 491, 622
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 308, 561, 757, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 488, 541
HpyF3I CTNAG 2 cut(s) 59, 478
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 4 cut(s) 382, 713, 781, 812
Kpn2I TCCGGA 1 cut(s) 216
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 425, 680
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 3 cut(s) 598, 703, 793
MaeI CTAG 2 cut(s) 672, 904
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 430, 686
MalI GATC 1 cut(s) 530
MbiI CCGCTC 1 cut(s) 102
MboI GATC 1 cut(s) 528
MboII GAAGA 2 cut(s) 662, 902
MfeI CAATTG 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 5 cut(s) 118, 223, 287, 524, 655
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 8 cut(s) 68, 361, 364, 370, 408, 583, 740, 753
Mox20I TGGCCA 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 759
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 522
MslI CAYNNNNRTG 2 cut(s) 711, 801
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 3 cut(s) 386, 482, 491
MspI CCGG 3 cut(s) 217, 330, 616
MspR9I CCNGG 2 cut(s) 89, 188
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 2 cut(s) 89, 188
MwoI GCNNNNNNNGC 3 cut(s) 479, 488, 541
NcoI CCATGG 1 cut(s) 808
NdeII GATC 1 cut(s) 528
NlaIII CATG 4 cut(s) 382, 713, 781, 812
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 1 cut(s) 382
PaeR7I CTCGAG 2 cut(s) 744, 825
PceI AGGCCT 1 cut(s) 279
PciI ACATGT 1 cut(s) 378
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 283, 639
PkrI GCNGC 2 cut(s) 170, 490
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 378
Psp1406I AACGTT 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 87, 186
PspGI CCWGG 2 cut(s) 87, 186
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 219
PspXI VCTCGAGB 2 cut(s) 744, 825
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 6 cut(s) 73, 164, 371, 575, 620, 857
RsaNI GTAC 6 cut(s) 72, 163, 370, 574, 619, 856
RseI CAYNNNNRTG 2 cut(s) 711, 801
SatI GCNGC 2 cut(s) 169, 489
Sau3AI GATC 1 cut(s) 528
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 89, 188
SfaNI GCATC 3 cut(s) 598, 703, 793
Sfr274I CTCGAG 2 cut(s) 744, 825
SinI GGWCC 1 cut(s) 219
SlaI CTCGAG 2 cut(s) 744, 825
SmiMI CAYNNNNRTG 2 cut(s) 711, 801
SmlI CTYRAG 3 cut(s) 744, 764, 825
SmoI CTYRAG 3 cut(s) 744, 764, 825
Sse9I AATT 5 cut(s) 118, 223, 287, 524, 655
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 5 cut(s) 100, 169, 384, 482, 533
SspI AATATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 672, 904
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 87, 186
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 745, 826
TasI AATT 5 cut(s) 118, 223, 287, 524, 655
TatI WGTACW 1 cut(s) 573
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 283, 639
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 219
XagI CCTNNNNNAGG 1 cut(s) 364
XceI RCATGY 1 cut(s) 382
XhoI CTCGAG 2 cut(s) 744, 825
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 2 cut(s) 672, 904
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.