Rmu_co8207458.1_g000001

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8207458.1
OG0000341
Physical Location & Seq
Forward (+)
1 .. 664
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8207458.1_g000001.1.cds

Sequence Viewer

Length: 590 bp
gtgcttgctgggcatttacagtagcagcagctgttgaagggctaaccaaaatcaaaaccggccaattgatctcactctccgagcagcaacttgtggactgcaatcatggcaactctgggtgcaacggtggtagtttagaatccgcctattcctacgtagtacaaaacggaggactcgctcgtgaagaaacatacccgtaccaggcaacagacacgggaacatgcgatactaacaaggaaagtgagcatgcggcacaaatcactggctacgaacgcgtcccttccagaagtgaaaatgatctacagaaggctgtggccatgcaaccagtatcggtttgcgtttctgcttatggacaagattttcagatgtacggcagtggggtgttctccggcaattgtgggacggagatcgaccacgccgtcacggccattggctacgggacgactgaagatggaaccccctattggttaatgaagaactcatggggggagggttggggtgaaagggggtatatgaggattcttagaaacagtgatgccccagagggtatgtgcggccttgctctgaattccgcctatccgactgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

195

Amino Acids

20.84

Weight (kDa)

4.56

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AccII CGCG 1 cut(s) 275
AciI CCGC 4 cut(s) 143, 250, 554, 572
AcoI YGGCCR 3 cut(s) 60, 314, 425
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 3 cut(s) 161, 199, 370
AfiI CCNNNNNNNGG 2 cut(s) 201, 464
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 4 cut(s) 60, 314, 425, 555
ApeKI GCWGC 3 cut(s) 25, 28, 84
ApoI RAATTY 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 511
BalI TGGCCA 1 cut(s) 316
BauI CACGAG 1 cut(s) 179
BbvI GCAGC 3 cut(s) 37, 40, 96
BccI CCATC 1 cut(s) 445
BceAI ACGGC 3 cut(s) 387, 403, 440
BciT130I CCWGG 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 424
BisI GCNGC 5 cut(s) 26, 29, 85, 251, 555
BlsI GCNGC 5 cut(s) 27, 30, 86, 252, 556
Bme1390I CCNGG 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 464
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 267, 325
BseBI CCWGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 201, 464
BseNI ACTGG 2 cut(s) 267, 325
BseXI GCAGC 3 cut(s) 37, 40, 96
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 4 cut(s) 62, 316, 427, 557
BsiSI CCGG 2 cut(s) 59, 389
BslFI GGGAC 3 cut(s) 262, 414, 453
BslI CCNNNNNNNGG 2 cut(s) 201, 464
BsmFI GGGAC 3 cut(s) 262, 414, 453
BsnI GGCC 4 cut(s) 62, 316, 427, 557
Bsp143I GATC 3 cut(s) 68, 297, 407
BspACI CCGC 4 cut(s) 143, 250, 554, 572
BspANI GGCC 4 cut(s) 62, 316, 427, 557
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 2 cut(s) 267, 325
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 3 cut(s) 68, 297, 407
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 3 cut(s) 21, 127, 532
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 6, 248
BstDEI CTNAG 1 cut(s) 523
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 3 cut(s) 71, 300, 410
BstMBI GATC 3 cut(s) 68, 297, 407
BstMWI GCNNNNNNNGC 4 cut(s) 10, 107, 272, 424
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 224, 250
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 301
BstSNI TACGTA 1 cut(s) 156
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 37, 40, 96
BsuRI GGCC 4 cut(s) 62, 316, 427, 557
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 260, 381, 537
Cac8I GCNNGC 2 cut(s) 6, 248
CaiI CAGNNNCTG 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 58
CseI GACGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 160, 198, 369
CviAII CATG 5 cut(s) 106, 221, 247, 318, 482
CviJI RGCY 9 cut(s) 31, 42, 62, 266, 310, 316, 427, 434, 557
CviKI_1 RGCY 9 cut(s) 31, 42, 62, 266, 310, 316, 427, 434, 557
CviQI GTAC 3 cut(s) 160, 198, 369
DdeI CTNAG 1 cut(s) 523
DpnI GATC 3 cut(s) 70, 299, 409
DpnII GATC 3 cut(s) 68, 297, 407
DrdI GACNNNNNNGTC 1 cut(s) 418
DseDI GACNNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 3 cut(s) 60, 314, 425
EciI GGCGGA 2 cut(s) 132, 561
Eco105I TACGTA 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 200
FaeI CATG 5 cut(s) 109, 224, 250, 321, 485
FaqI GGGAC 3 cut(s) 262, 414, 453
FatI CATG 5 cut(s) 105, 220, 246, 317, 481
Fnu4HI GCNGC 5 cut(s) 26, 29, 85, 251, 555
Fsp4HI GCNGC 5 cut(s) 26, 29, 85, 251, 555
GluI GCNGC 5 cut(s) 26, 29, 85, 251, 555
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 4 cut(s) 62, 316, 427, 557
HapII CCGG 2 cut(s) 59, 389
HgaI GACGC 1 cut(s) 264
Hin1II CATG 5 cut(s) 109, 224, 250, 321, 485
HinfI GANTC 3 cut(s) 139, 173, 519
HpaII CCGG 2 cut(s) 59, 389
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 4 cut(s) 81, 365, 566, 581
Hpy188III TCNNGA 2 cut(s) 181, 284
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 3 cut(s) 31, 290, 300
HpyCH4III ACNGT 3 cut(s) 21, 127, 532
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 101, 122, 321, 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 107, 272, 424
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 5 cut(s) 109, 224, 250, 321, 485
Kzo9I GATC 3 cut(s) 68, 297, 407
LpnPI CCDG 9 cut(s) 72, 101, 187, 214, 248, 297, 338, 402, 554
Lsp1109I GCAGC 3 cut(s) 37, 40, 96
LweI GCATC 1 cut(s) 525
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 420
MalI GATC 3 cut(s) 70, 299, 409
MboI GATC 3 cut(s) 68, 297, 407
MboII GAAGA 3 cut(s) 196, 460, 486
MfeI CAATTG 2 cut(s) 64, 393
MlsI TGGCCA 1 cut(s) 316
MluCI AATT 3 cut(s) 64, 393, 567
MluI ACGCGT 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 316
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 4 cut(s) 163, 483, 509, 537
Mox20I TGGCCA 1 cut(s) 316
MscI TGGCCA 1 cut(s) 316
MseI TTAA 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 2 cut(s) 59, 389
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 2 cut(s) 64, 393
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 10, 107, 272, 424
NdeII GATC 3 cut(s) 68, 297, 407
NlaIII CATG 5 cut(s) 109, 224, 250, 321, 485
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 420
NspI RCATGY 2 cut(s) 224, 250
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PfeI GAWTC 2 cut(s) 139, 519
PkrI GCNGC 5 cut(s) 27, 30, 86, 252, 556
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 456
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
PstNI CAGNNNCTG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 3 cut(s) 161, 199, 370
RsaNI GTAC 3 cut(s) 160, 198, 369
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 5 cut(s) 26, 29, 85, 251, 555
Sau3AI GATC 3 cut(s) 68, 297, 407
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 202
SetI ASST 2 cut(s) 33, 158
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 301
SnaBI TACGTA 1 cut(s) 156
SphI GCATGC 1 cut(s) 250
Sse9I AATT 3 cut(s) 64, 393, 567
SsiI CCGC 4 cut(s) 143, 250, 554, 572
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 21, 127, 532
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 410
TasI AATT 3 cut(s) 64, 393, 567
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 253, 557
TfiI GAWTC 2 cut(s) 139, 519
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 3 cut(s) 267, 381, 537
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 3 cut(s) 25, 28, 84
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 1 cut(s) 487
TspGWI ACGGA 2 cut(s) 182, 418
TspRI CASTG 3 cut(s) 267, 381, 537
XapI RAATTY 1 cut(s) 567
XceI RCATGY 2 cut(s) 224, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.