Rmu_sc0009313.1_g000011

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009313.1
OG0000341
Physical Location & Seq
Forward (+)
35601 .. 36720
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009313.1_g000011.1.cds

Sequence Viewer

Length: 1017 bp
atggatgtcaaaagaaaccatgtgttcattgccatattcattatcttagggactgtagcatctcaagccacatgccgcgcattgtatgcttcttcctttgctgaaaaacatgagcaatggatggaaaagttcggacgcgtttacccggatagtgcagagaaggagaggcgtttttccatattcatgcagaatgtggagtatgtggagaagttcaataatgaagggaacaaaacttacaagttaagcatcaacgaattctctgacatgaccaatgaagagttcctgaggcgtcgtactgggtacaaaatggccaccagctcaaactcaacctcatttaggtaccaaagtctggcaagtactgaagttccaactagtgttgactggagggaaaaaggagctgtcacaccgataaaggatcaaggaagctgcagtgtttgctgggcctttacagcggtagcagctgtagaagggcttaccaaaatcaaaactgaccaactgatctctctgtctgagcaacaactcgtggattgtgatgatggtagctttggctgtcaacctggttacataaatgaagcctttgactacatcaagcaaaacggaattgcacgcgaagaaaactatcaatacctaaattccgacagtgccagatgcgacactagcaaggcaaatgagcgcgctgctcagataacgggttatgaaaatgtgccgaccaatagtgaaagtgatctactcaaggctgtggccatgcaaccagtctcagttgccattgacgccagcggagaagcctttcagtcatacagtagtggggtgttctctggtgattgtggtaccagcctgaaccatgctgtaacagccgttgggtatgggacgactgaagatggcaccgattattggttgatgaagaattcatggggtgagacttggggtgaaaatggctacataaaaattcttagaaatgctaatcccccatatggtctttgtggcattgccaaccaagctctctatccgactgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

338

Amino Acids

37.53

Weight (kDa)

4.93

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 339, 827
AccB1I GGYRCC 3 cut(s) 339, 827, 881
AccB7I CCANNNNNTGG 1 cut(s) 349
AccII CGCG 4 cut(s) 78, 138, 609, 675
AciI CCGC 3 cut(s) 76, 452, 777
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 2 cut(s) 309, 741
AcsI RAATTY 4 cut(s) 254, 631, 904, 945
AcuI CTGAAG 2 cut(s) 381, 894
AcyI GRCGYC 2 cut(s) 289, 771
AfaI GTAC 5 cut(s) 295, 302, 341, 358, 829
AfiI CCNNNNNNNGG 4 cut(s) 336, 349, 891, 971
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 214
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 1 cut(s) 556
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 6 cut(s) 318, 398, 426, 461, 543, 998
AluI AGCT 6 cut(s) 318, 398, 426, 461, 543, 998
Alw26I GTCTC 2 cut(s) 760, 911
AlwI GGATC 1 cut(s) 423
AoxI GGCC 3 cut(s) 309, 441, 741
ApeKI GCWGC 3 cut(s) 426, 458, 677
ApoI RAATTY 4 cut(s) 254, 631, 904, 945
Asp700I GAANNNNTTC 1 cut(s) 786
Asp718I GGTACC 2 cut(s) 339, 827
AspLEI GCGC 3 cut(s) 80, 675, 677
AspS9I GGNCC 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 830, 926, 938
AxyI CCTNAGG 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BalI TGGCCA 2 cut(s) 311, 743
BanI GGYRCC 3 cut(s) 339, 827, 881
BauI CACGAG 1 cut(s) 521
BbvI GCAGC 3 cut(s) 413, 470, 664
BccI CCATC 3 cut(s) 115, 530, 872
BceAI ACGGC 1 cut(s) 839
BciT130I CCWGG 1 cut(s) 558
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 760, 911
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 372, 657
BfmI CTRYAG 3 cut(s) 54, 427, 462
BisI GCNGC 4 cut(s) 76, 427, 459, 678
BlsI GCNGC 4 cut(s) 77, 428, 460, 679
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 146, 558
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 3 cut(s) 341, 829, 883
BmrFI CCNGG 2 cut(s) 146, 558
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 68, 255, 638
BmuI ACTGGG 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 2 cut(s) 48, 716
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 289, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 336, 349, 891, 971
Bse1I ACTGG 3 cut(s) 301, 386, 752
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 3 cut(s) 27, 122, 984
BseBI CCWGG 1 cut(s) 558
BseGI GGATG 2 cut(s) 10, 126
BseLI CCNNNNNNNGG 4 cut(s) 336, 349, 891, 971
BseMI GCAATG 3 cut(s) 27, 122, 984
BseMII CTCAG 4 cut(s) 275, 501, 695, 771
BseNI ACTGG 3 cut(s) 301, 386, 752
BsePI GCGCGC 1 cut(s) 673
BseXI GCAGC 3 cut(s) 413, 470, 664
BseYI CCCAGC 1 cut(s) 438
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 4 cut(s) 78, 138, 609, 675
BshFI GGCC 3 cut(s) 311, 443, 743
BshNI GGYRCC 3 cut(s) 339, 827, 881
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 64, 880
BslI CCNNNNNNNGG 4 cut(s) 336, 349, 891, 971
BsmAI GTCTC 2 cut(s) 760, 911
BsmFI GGGAC 2 cut(s) 64, 880
BsnI GGCC 3 cut(s) 311, 443, 743
Bsp143I GATC 3 cut(s) 415, 498, 724
BspACI CCGC 3 cut(s) 76, 452, 777
BspANI GGCC 3 cut(s) 311, 443, 743
BspCNI CTCAG 4 cut(s) 276, 502, 694, 770
BspFNI CGCG 4 cut(s) 78, 138, 609, 675
BspLI GGNNCC 3 cut(s) 341, 829, 883
BspMAI CTGCAG 1 cut(s) 431
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 3 cut(s) 339, 827, 881
BsrDI GCAATG 3 cut(s) 27, 122, 984
BsrI ACTGG 3 cut(s) 301, 386, 752
BssHII GCGCGC 1 cut(s) 673
BssMI GATC 3 cut(s) 415, 498, 724
BssNI GRCGYC 2 cut(s) 289, 771
BssSI CACGAG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 55, 641, 800
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 2 cut(s) 289, 771
BstAPI GCANNNNNTGC 2 cut(s) 86, 435
BstC8I GCNNGC 3 cut(s) 607, 675, 775
BstDEI CTNAG 6 cut(s) 46, 284, 510, 681, 757, 950
BstENI CCTNNNNNAGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 10, 126
BstFNI CGCG 4 cut(s) 78, 138, 609, 675
BstHHI GCGC 3 cut(s) 80, 675, 677
BstKTI GATC 3 cut(s) 418, 501, 727
BstMAI GTCTC 2 cut(s) 760, 911
BstMBI GATC 3 cut(s) 415, 498, 724
BstMWI GCNNNNNNNGC 9 cut(s) 65, 86, 435, 449, 458, 657, 770, 851, 995
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 144, 556
BstSFI CTRYAG 3 cut(s) 54, 427, 462
BstUI CGCG 4 cut(s) 78, 138, 609, 675
BstV1I GCAGC 3 cut(s) 413, 470, 664
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 311, 443, 743
BtsCI GGATG 2 cut(s) 10, 126
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 436, 646
Cac8I GCNNGC 3 cut(s) 607, 675, 775
CfoI GCGC 3 cut(s) 80, 675, 677
Cfr13I GGNCC 1 cut(s) 441
CseI GACGC 3 cut(s) 144, 278, 779
CsiI ACCWGGT 1 cut(s) 556
Csp6I GTAC 5 cut(s) 294, 301, 340, 357, 828
CviAII CATG 8 cut(s) 20, 72, 110, 184, 265, 745, 842, 909
CviQI GTAC 5 cut(s) 294, 301, 340, 357, 828
DdeI CTNAG 6 cut(s) 46, 284, 510, 681, 757, 950
DpnI GATC 3 cut(s) 417, 500, 726
DpnII GATC 3 cut(s) 415, 498, 724
EaeI YGGCCR 2 cut(s) 309, 741
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco57I CTGAAG 2 cut(s) 381, 894
Eco81I CCTNAGG 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoRI GAATTC 2 cut(s) 254, 904
EcoRII CCWGG 1 cut(s) 556
FaeI CATG 8 cut(s) 23, 75, 113, 187, 268, 748, 845, 912
FaqI GGGAC 2 cut(s) 64, 880
FatI CATG 8 cut(s) 19, 71, 109, 183, 264, 744, 841, 908
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 4 cut(s) 76, 427, 459, 678
FokI GGATG 2 cut(s) 17, 133
Fsp4HI GCNGC 4 cut(s) 76, 427, 459, 678
FspBI CTAG 2 cut(s) 372, 657
GlaI GCGC 3 cut(s) 79, 674, 676
GluI GCNGC 4 cut(s) 76, 427, 459, 678
GsaI CCCAGC 1 cut(s) 442
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 3 cut(s) 311, 443, 743
HapII CCGG 1 cut(s) 146
HgaI GACGC 3 cut(s) 144, 278, 779
HhaI GCGC 3 cut(s) 80, 675, 677
Hin1I GRCGYC 2 cut(s) 289, 771
Hin1II CATG 8 cut(s) 23, 75, 113, 187, 268, 748, 845, 912
Hin6I GCGC 3 cut(s) 78, 673, 675
HinP1I GCGC 3 cut(s) 78, 673, 675
HincII GTYRAC 2 cut(s) 379, 554
HindII GTYRAC 2 cut(s) 379, 554
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 830, 926, 938
Hpy166II GTNNAC 3 cut(s) 142, 379, 554
Hpy188I TCNGA 6 cut(s) 134, 262, 511, 637, 684, 1008
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 3 cut(s) 142, 379, 554
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 3 cut(s) 154, 215, 461
HpyCH4III ACNGT 3 cut(s) 55, 641, 800
HpyCH4V TGCA 6 cut(s) 155, 187, 429, 605, 748, 1013
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 86, 435, 449, 458, 657, 770, 851, 995
HpyF3I CTNAG 6 cut(s) 46, 284, 510, 681, 757, 950
Hsp92I GRCGYC 2 cut(s) 289, 771
Hsp92II CATG 8 cut(s) 23, 75, 113, 187, 268, 748, 845, 912
HspAI GCGC 3 cut(s) 78, 673, 675
KpnI GGTACC 2 cut(s) 343, 831
Kzo9I GATC 3 cut(s) 415, 498, 724
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 3 cut(s) 413, 470, 664
LweI GCATC 3 cut(s) 68, 255, 638
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 2 cut(s) 372, 657
MaeIII GTNAC 3 cut(s) 400, 560, 847
MalI GATC 3 cut(s) 417, 500, 726
MboI GATC 3 cut(s) 415, 498, 724
MboII GAAGA 5 cut(s) 84, 287, 623, 887, 913
MlsI TGGCCA 2 cut(s) 311, 743
MluCI AATT 5 cut(s) 254, 600, 631, 904, 945
MluI ACGCGT 1 cut(s) 136
MluNI TGGCCA 2 cut(s) 311, 743
MmeI TCCRAC 2 cut(s) 392, 660
MnlI CCTC 4 cut(s) 159, 279, 340, 378
Mox20I TGGCCA 2 cut(s) 311, 743
MroXI GAANNNNTTC 1 cut(s) 786
MscI TGGCCA 2 cut(s) 311, 743
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 2 cut(s) 311, 743
MspA1I CMGCKG 3 cut(s) 452, 461, 777
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 146, 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 4 cut(s) 78, 138, 609, 675
MwoI GCNNNNNNNGC 9 cut(s) 65, 86, 435, 449, 458, 657, 770, 851, 995
NciI CCSGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 970
NdeII GATC 3 cut(s) 415, 498, 724
NlaIII CATG 8 cut(s) 23, 75, 113, 187, 268, 748, 845, 912
NlaIV GGNNCC 3 cut(s) 341, 829, 883
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 75
PauI GCGCGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 786
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 4 cut(s) 77, 428, 460, 679
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 438
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 341, 829, 883
PspPI GGNCC 1 cut(s) 441
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PstI CTGCAG 1 cut(s) 431
PteI GCGCGC 1 cut(s) 673
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 5 cut(s) 295, 302, 341, 358, 829
RsaNI GTAC 5 cut(s) 294, 301, 340, 357, 828
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 76, 427, 459, 678
Sau3AI GATC 3 cut(s) 415, 498, 724
Sau96I GGNCC 1 cut(s) 441
ScaI AGTACT 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 146, 558
SexAI ACCWGGT 1 cut(s) 556
SfaNI GCATC 3 cut(s) 68, 255, 638
SfcI CTRYAG 3 cut(s) 54, 427, 462
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 63, 731
SmoI CTYRAG 2 cut(s) 63, 731
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 5 cut(s) 254, 600, 631, 904, 945
SsiI CCGC 3 cut(s) 76, 452, 777
SspMI CTAG 2 cut(s) 372, 657
StyD4I CCNGG 2 cut(s) 144, 556
TaaI ACNGT 3 cut(s) 55, 641, 800
TasI AATT 5 cut(s) 254, 600, 631, 904, 945
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 436, 646
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 3 cut(s) 426, 458, 677
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 9 cut(s) 16, 28, 172, 234, 288, 585, 711, 897, 914
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 2 cut(s) 436, 646
Van91I CCANNNNNTGG 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 334
XapI RAATTY 4 cut(s) 254, 631, 904, 945
XceI RCATGY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 2 cut(s) 372, 657
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.