Rw5G007570

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000341
Physical Location & Seq
Reverse (-)
7989309 .. 7990450
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007570.1

Sequence Viewer

Length: 1038 bp
ATGGATTTCAAAAGAAACCATGTGATCAGTGCCATATTCATCATCTTGGGGACTTTGGCTTCTCAAGCCACCTCCCGTGCATTGTACGAATCTTCCATTGCCGAAAAACATGAGCAATGGATGGCAAAGCACGGCCGCGTTTACCACGACAGTGCAGAGAAGGAAAGGCGTTTTGCCATCTTCAGGAAGAATGTCGAATTCGTGGAGAAGTTCAACAAAGAAGGGAACAAGACTTACAAGTTGAGCATCAACAAGTTCTCTGATATGACCAATGAAGAATTCATGAGACATCATACCGGATACAAAATGTCAACCAGCTCAAATACTTCAACCTCATTCAAAAGTAACTATTTTCAGTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCATGGACTGGAGGGAACAACAAGCTGTCACCGGCATAAAGGATCAAGGTCGATGTGGTGCTTGCTGGGCATTTACAGTAGTGGCAGCTGTGGAAGGGCTAACCAAAATCAAAGCTGGCAAATTGATCTCGCTCTCTGAGCAGCAACTTGTGGACTGCACTCAACAGAACAATGGGTGCAGCGGTGGTAGCTTAGAAAGCGCCTACGAGTACGTTATACAAAACAGAGGAATCGCTCGCGAAGATACTTACCAATACCAGAGCACTGACATGGGAACATGCGACGCTAACAAGGAAAGTGAGCATGCTGCACAGATCACTGGTTATGAACAAGTCCCTTCCAGAAGTGAAAACGATCTACTCAAGGCTGTCTCCATGCAACCAGTCTCGGTTAGCATTGCTGCTTATGGAACAGAGTTTCAGCACTACGGCAGTGGGGTGTTCTCTGGCGATTGTGGAACACACCTCGACCACGCTGTCACAGCCATTGGCTACGGGACGACTGAAGATGGAACCCCCTATTGGTTACTGAAGAACTCATGGGGCGAGCAGTGGGGTGAAAGTGGGTATATGAGAATTCTTAGAAACAGTGATGCCCCAGAAGGTATGTGCGGCCTCGCTATGAATGCTTTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

345

Amino Acids

38.49

Weight (kDa)

5.83

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 94 5.9e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 128 - 344 5.8e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 866
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 2 cut(s) 138, 630
AciI CCGC 3 cut(s) 136, 573, 1002
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 197, 278, 966
AcuI CTGAAG 3 cut(s) 166, 915, 941
AfaI GTAC 3 cut(s) 86, 359, 602
AfiI CCNNNNNNNGG 3 cut(s) 183, 367, 912
AgsI TTSAA 4 cut(s) 10, 214, 330, 340
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 895, 927
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 6 cut(s) 318, 366, 416, 479, 506, 582
AluI AGCT 6 cut(s) 318, 366, 416, 479, 506, 582
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 280, 766, 781
AlwI GGATC 1 cut(s) 441
AoxI GGCC 2 cut(s) 133, 1003
ApeKI GCWGC 6 cut(s) 371, 476, 532, 570, 698, 791
ApoI RAATTY 3 cut(s) 197, 278, 966
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 412, 959
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 6 cut(s) 358, 488, 544, 582, 685, 778
BccI CCATC 3 cut(s) 115, 185, 893
BceAI ACGGC 2 cut(s) 148, 835
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 280, 766, 781
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 594
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 8 cut(s) 136, 372, 477, 533, 571, 699, 792, 1003
BlsI GCNGC 8 cut(s) 137, 373, 478, 534, 572, 700, 793, 1004
BmiI GGNNCC 1 cut(s) 904
BmsI GCATC 2 cut(s) 255, 973
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 2 cut(s) 48, 737
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 367, 912
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 404, 715, 773
Bse3DI GCAATG 3 cut(s) 96, 122, 786
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 183, 367, 912
BseMI GCAATG 3 cut(s) 96, 122, 786
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 404, 715, 773
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 6 cut(s) 358, 488, 544, 582, 685, 778
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 4 cut(s) 174, 532, 589, 684
Bsh1236I CGCG 2 cut(s) 138, 630
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 135, 1005
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 2 cut(s) 297, 423
BslFI GGGAC 3 cut(s) 64, 710, 901
BslI CCNNNNNNNGG 3 cut(s) 183, 367, 912
BsmAI GTCTC 3 cut(s) 280, 766, 781
BsmFI GGGAC 3 cut(s) 64, 710, 901
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 2 cut(s) 135, 1005
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 5 cut(s) 24, 433, 516, 705, 745
Bsp68I TCGCGA 1 cut(s) 630
BspACI CCGC 3 cut(s) 136, 573, 1002
BspANI GGCC 2 cut(s) 135, 1005
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 2 cut(s) 138, 630
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 904
BspPI GGATC 1 cut(s) 441
BsrDI GCAATG 3 cut(s) 96, 122, 786
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 3 cut(s) 404, 715, 773
BssAI RCCGGY 1 cut(s) 422
BssMI GATC 5 cut(s) 24, 433, 516, 705, 745
Bst4CI ACNGT 3 cut(s) 152, 469, 980
BstC8I GCNNGC 5 cut(s) 454, 508, 628, 696, 938
BstDEI CTNAG 3 cut(s) 528, 583, 971
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 2 cut(s) 138, 630
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 5 cut(s) 27, 436, 519, 708, 748
BstMAI GTCTC 3 cut(s) 280, 766, 781
BstMBI GATC 5 cut(s) 24, 433, 516, 705, 745
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 7 cut(s) 65, 458, 529, 579, 588, 872, 1016
BstNSI RCATGY 2 cut(s) 672, 698
BstUI CGCG 2 cut(s) 138, 630
BstV1I GCAGC 6 cut(s) 358, 488, 544, 582, 685, 778
BstZI CGGCCG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 135, 1005
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 2 cut(s) 829, 947
BtsIMutI CAGTG 7 cut(s) 34, 157, 654, 708, 829, 947, 985
BtuMI TCGCGA 1 cut(s) 630
Cac8I GCNNGC 5 cut(s) 454, 508, 628, 696, 938
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 422
CseI GACGC 1 cut(s) 683
Csp6I GTAC 3 cut(s) 85, 358, 601
CviAII CATG 9 cut(s) 20, 110, 283, 394, 661, 669, 695, 766, 930
CviQI GTAC 3 cut(s) 85, 358, 601
DdeI CTNAG 3 cut(s) 528, 583, 971
DpnI GATC 5 cut(s) 26, 435, 518, 707, 747
DpnII GATC 5 cut(s) 24, 433, 516, 705, 745
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 133
Eco57I CTGAAG 3 cut(s) 166, 915, 941
EcoRI GAATTC 3 cut(s) 197, 278, 966
FaeI CATG 9 cut(s) 23, 113, 286, 397, 664, 672, 698, 769, 933
FaqI GGGAC 3 cut(s) 64, 710, 901
FatI CATG 9 cut(s) 19, 109, 282, 393, 660, 668, 694, 765, 929
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 8 cut(s) 136, 372, 477, 533, 571, 699, 792, 1003
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 8 cut(s) 136, 372, 477, 533, 571, 699, 792, 1003
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 592
GluI GCNGC 8 cut(s) 136, 372, 477, 533, 571, 699, 792, 1003
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 421
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 2 cut(s) 135, 1005
HapII CCGG 2 cut(s) 297, 423
HgaI GACGC 1 cut(s) 683
HhaI GCGC 1 cut(s) 593
Hin1II CATG 9 cut(s) 23, 113, 286, 397, 664, 672, 698, 769, 933
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 2 cut(s) 89, 621
HpaII CCGG 2 cut(s) 297, 423
HphI GGTGA 2 cut(s) 412, 959
Hpy166II GTNNAC 3 cut(s) 142, 312, 544
Hpy188I TCNGA 3 cut(s) 262, 529, 1029
Hpy188III TCNNGA 4 cut(s) 184, 283, 629, 732
Hpy8I GTNNAC 3 cut(s) 142, 312, 544
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 5 cut(s) 154, 215, 479, 738, 986
HpyCH4III ACNGT 3 cut(s) 152, 469, 980
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 7 cut(s) 80, 155, 549, 570, 701, 769, 1034
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 458, 529, 579, 588, 872, 1016
HpyF3I CTNAG 3 cut(s) 528, 583, 971
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 9 cut(s) 23, 113, 286, 397, 664, 672, 698, 769, 933
HspAI GCGC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 5 cut(s) 24, 433, 516, 705, 745
Lsp1109I GCAGC 6 cut(s) 358, 488, 544, 582, 685, 778
LweI GCATC 2 cut(s) 255, 973
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 4 cut(s) 344, 418, 868, 915
MalI GATC 5 cut(s) 26, 435, 518, 707, 747
MboI GATC 5 cut(s) 24, 433, 516, 705, 745
MboII GAAGA 7 cut(s) 84, 172, 199, 287, 644, 908, 934
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 4 cut(s) 197, 278, 512, 966
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 6 cut(s) 82, 343, 396, 611, 866, 1016
MroXI GAANNNNTTC 1 cut(s) 1019
MslI CAYNNNNRTG 2 cut(s) 150, 659
MspA1I CMGCKG 2 cut(s) 479, 573
MspI CCGG 2 cut(s) 297, 423
Mva1269I GAATGC 1 cut(s) 1021
MvnI CGCG 2 cut(s) 138, 630
MwoI GCNNNNNNNGC 7 cut(s) 65, 458, 529, 579, 588, 872, 1016
NdeII GATC 5 cut(s) 24, 433, 516, 705, 745
NlaIII CATG 9 cut(s) 23, 113, 286, 397, 664, 672, 698, 769, 933
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 418, 868
NruI TCGCGA 1 cut(s) 630
NspI RCATGY 2 cut(s) 672, 698
OliI CACNNNNGTG 1 cut(s) 150
PaeI GCATGC 1 cut(s) 698
PagI TCATGA 1 cut(s) 282
PctI GAATGC 1 cut(s) 1021
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 2 cut(s) 89, 621
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 8 cut(s) 137, 373, 478, 534, 572, 700, 793, 1004
PspFI CCCAGC 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 904
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PvuII CAGCTG 1 cut(s) 479
RruI TCGCGA 1 cut(s) 630
RsaI GTAC 3 cut(s) 86, 359, 602
RsaNI GTAC 3 cut(s) 85, 358, 601
RseI CAYNNNNRTG 2 cut(s) 150, 659
SatI GCNGC 8 cut(s) 136, 372, 477, 533, 571, 699, 792, 1003
Sau3AI GATC 5 cut(s) 24, 433, 516, 705, 745
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 2 cut(s) 255, 973
SmiMI CAYNNNNRTG 2 cut(s) 150, 659
SmlI CTYRAG 2 cut(s) 63, 752
SmoI CTYRAG 2 cut(s) 63, 752
SphI GCATGC 1 cut(s) 698
Sse9I AATT 4 cut(s) 197, 278, 512, 966
SsiI CCGC 3 cut(s) 136, 573, 1002
SspMI CTAG 1 cut(s) 390
TaaI ACNGT 3 cut(s) 152, 469, 980
TaiI ACGT 1 cut(s) 606
TaqI TCGA 3 cut(s) 195, 442, 858
TasI AATT 4 cut(s) 197, 278, 512, 966
TauI GCSGC 2 cut(s) 138, 1005
TfiI GAWTC 2 cut(s) 89, 621
TscAI CASTG 7 cut(s) 34, 157, 661, 715, 829, 947, 985
TseFI GTSAC 2 cut(s) 418, 868
TseI GCWGC 6 cut(s) 371, 476, 532, 570, 698, 791
Tsp45I GTSAC 2 cut(s) 418, 868
TspDTI ATGAA 5 cut(s) 28, 271, 288, 732, 1028
TspRI CASTG 7 cut(s) 34, 157, 661, 715, 829, 947, 985
Van91I CCANNNNNTGG 1 cut(s) 367
XapI RAATTY 3 cut(s) 197, 278, 966
XceI RCATGY 2 cut(s) 672, 698
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.