Rroxscaffold_1G00045430

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000341
Physical Location & Seq
Forward (+)
64418308 .. 64419652
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045430.1

Sequence Viewer

Length: 324 bp
ATGGCTTTTCAACGCATTAACCTTGTGTTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCTCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCAATGGATGGCAAAGCACGGACGCGTTTACCCCAATGCGGCAGAGAAGGAAATGCGTTTCGACATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGCGAATAAGACTTACAAGTTGAACATCAACAGGTTTGCTGATATGACCAACGAGGAATTCCGGAGATATCATACCGGATTCAAAATGCCCCCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

107

Amino Acids

12.65

Weight (kDa)

9.47

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 2.4e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 4 cut(s) 11, 217, 247, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 285
ApoI RAATTY 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 317
BccI CCATC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 317
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 48, 315
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 48, 315
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 286, 300, 317
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 285
BspACI CCGC 1 cut(s) 155
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 48, 315
BssT1I CCWWGG 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 205
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 68, 101
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 129
CseI GACGC 1 cut(s) 147
CviAII CATG 2 cut(s) 68, 113
CviJI RGCY 4 cut(s) 5, 62, 95, 320
CviKI_1 RGCY 4 cut(s) 5, 62, 95, 320
Eco130I CCWWGG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 281
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 71, 116
FaiI YATR 6 cut(s) 38, 69, 90, 114, 269, 297
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 67, 112
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HapII CCGG 3 cut(s) 286, 300, 317
HgaI GACGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 71, 116
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 1 cut(s) 303
HpaII CCGG 3 cut(s) 286, 300, 317
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 187, 286
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 101
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 71, 116
Kpn2I TCCGGA 1 cut(s) 285
LpnPI CCDG 4 cut(s) 172, 241, 299, 313
MaeII ACGT 1 cut(s) 204
MboII GAAGA 2 cut(s) 175, 202
MluCI AATT 1 cut(s) 281
MluI ACGCGT 1 cut(s) 139
MnlI CCTC 1 cut(s) 271
MroI TCCGGA 1 cut(s) 285
MseI TTAA 2 cut(s) 18, 322
MspI CCGG 3 cut(s) 286, 300, 317
MspR9I CCNGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 68, 101
NciI CCSGG 1 cut(s) 317
NlaIII CATG 2 cut(s) 71, 116
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 205
SaqAI TTAA 2 cut(s) 18, 322
SatI GCNGC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 317
SetI ASST 5 cut(s) 24, 50, 97, 207, 260
Sse9I AATT 1 cut(s) 281
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 177, 198
TasI AATT 1 cut(s) 281
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 18, 322
Tru9I TTAA 2 cut(s) 18, 322
TspDTI ATGAA 4 cut(s) 31, 72, 105, 237
TspGWI ACGGA 1 cut(s) 150
XapI RAATTY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.