Rh5BG241500

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000341
Physical Location & Seq
Reverse (-)
29164569 .. 29165712
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG241500.1

Sequence Viewer

Length: 1032 bp
ATGGCTTTTCAACGCATTAACCTTGTGCTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCCCGTTCACTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCAATGGATGGCAAAGCACGGATGCGTTTACCCCAATGTGACAGAGAAGAAAAGGCGTTTCGACATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAGTGAAGCGAATAAGACTTACAAGTTGAACATCAACAAGTTTTCTGATATGACCGACGAAGAATTCCGGAGATATCATACCGGATTCAAAATAATGCCCCCCGGCTTAAATTCAACGTCATCCAATTTTAGCTACCAAAGCTTGCCTGCTGCTGATATTCCTACTAGCGTGGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGTATCAAAAAACATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCCGAGCAGCAACTTGTGGACTGCGATCATCAAAACAATGGGTGCCGCGGTGGTGACTTAGAACGCGCCTATAACTACGTAAAGGAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGGGAACAGACATGGGAACATGCGATACTAACAAGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAAAGGGTCCCTTCCAAAAGTGAAAACGATCTACAGAAAGCTGTGGCCATGCAACCAGTATCGGTTGTCATAGAAGCTTCTGGACAAGATTTTAAGATGTACGACGGTGGGGTGTTCTCCGGCGAATGTGGGACGGACCTCGACCACGCCGTCACGGCCATTGGCTATGGGACGACTGAAGATGGAATCCCCTATTGGTTAATTAAGAACTCATGGGGGGAGGATTGGGGTGAAAGTGGGTATATGAGAATTCTTAGAAATAGTGATGCCCCAGAGGGTATGTGCGGCCTTGCTCTGTTTCCCGTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

343

Amino Acids

38.29

Weight (kDa)

5.3

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 1.9e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 126 - 341 1.9e-79 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
AccB1I GGYRCC 1 cut(s) 561
AccII CGCG 2 cut(s) 567, 585
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 5 cut(s) 441, 565, 567, 692, 996
AcoI YGGCCR 3 cut(s) 502, 756, 867
AcsI RAATTY 3 cut(s) 281, 328, 960
AcuI CTGAAG 2 cut(s) 169, 909
AfaI GTAC 2 cut(s) 641, 812
AfiI CCNNNNNNNGG 2 cut(s) 643, 644
AgsI TTSAA 5 cut(s) 11, 217, 247, 307, 333
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 889, 921
AluBI AGCT 7 cut(s) 95, 351, 360, 410, 473, 752, 788
AluI AGCT 7 cut(s) 95, 351, 360, 410, 473, 752, 788
AlwNI CAGNNNCTG 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 502, 756, 867, 997
ApeKI GCWGC 4 cut(s) 368, 467, 470, 526
ApoI RAATTY 3 cut(s) 281, 328, 960
AspLEI GCGC 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 718, 847
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 406, 584, 953
AvaII GGWCC 2 cut(s) 718, 847
BalI TGGCCA 1 cut(s) 758
BanI GGYRCC 1 cut(s) 561
BauI CACGAG 1 cut(s) 621
BbvI GCAGC 4 cut(s) 355, 479, 482, 538
BccI CCATC 2 cut(s) 118, 887
BceAI ACGGC 2 cut(s) 845, 882
BciT130I CCWGG 1 cut(s) 644
BcnI CCSGG 1 cut(s) 321
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 743
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 7 cut(s) 369, 468, 471, 527, 565, 693, 997
BlsI GCNGC 7 cut(s) 370, 469, 472, 528, 566, 694, 998
Bme1390I CCNGG 2 cut(s) 321, 644
Bme18I GGWCC 2 cut(s) 718, 847
BmgT120I GGNCC 2 cut(s) 718, 847
BmiI GGNNCC 3 cut(s) 563, 719, 720
BmrFI CCNGG 2 cut(s) 321, 644
BmsI GCATC 2 cut(s) 128, 967
BpmI CTGGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 321
BsaAI YACGTR 2 cut(s) 205, 598
BsaJI CCNNGG 4 cut(s) 48, 319, 565, 643
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 643, 644
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 3 cut(s) 398, 709, 767
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 4 cut(s) 48, 319, 565, 643
BseGI GGATG 4 cut(s) 74, 129, 143, 338
BseLI CCNNNNNNNGG 2 cut(s) 643, 644
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 3 cut(s) 398, 709, 767
BseXI GCAGC 4 cut(s) 355, 479, 482, 538
BseYI CCCAGC 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 567, 585
BshFI GGCC 4 cut(s) 504, 758, 869, 999
BshNI GGYRCC 1 cut(s) 561
BsiSI CCGG 5 cut(s) 286, 300, 321, 501, 831
BslFI GGGAC 4 cut(s) 67, 704, 856, 895
BslI CCNNNNNNNGG 2 cut(s) 643, 644
BsmFI GGGAC 4 cut(s) 67, 704, 856, 895
BsnI GGCC 4 cut(s) 504, 758, 869, 999
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 510, 544, 699, 739
BspACI CCGC 5 cut(s) 441, 565, 567, 692, 996
BspANI GGCC 4 cut(s) 504, 758, 869, 999
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 567, 585
BspLI GGNNCC 3 cut(s) 563, 719, 720
BspT107I GGYRCC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 3 cut(s) 398, 709, 767
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 4 cut(s) 48, 319, 565, 643
BssMI GATC 4 cut(s) 510, 544, 699, 739
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 4 cut(s) 87, 221, 463, 818
BstBAI YACGTR 2 cut(s) 205, 598
BstC8I GCNNGC 4 cut(s) 362, 366, 448, 690
BstDEI CTNAG 2 cut(s) 577, 965
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 4 cut(s) 74, 129, 143, 338
BstFNI CGCG 2 cut(s) 567, 585
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 4 cut(s) 513, 547, 702, 742
BstMBI GATC 4 cut(s) 510, 544, 699, 739
BstMWI GCNNNNNNNGC 6 cut(s) 68, 101, 357, 447, 452, 866
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 3 cut(s) 441, 666, 692
BstSCI CCNGG 2 cut(s) 319, 642
BstSFI CTRYAG 1 cut(s) 743
BstSNI TACGTA 1 cut(s) 598
BstUI CGCG 2 cut(s) 567, 585
BstV1I GCAGC 4 cut(s) 355, 479, 482, 538
BsuRI GGCC 4 cut(s) 504, 758, 869, 999
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 4 cut(s) 74, 129, 143, 338
BtsIMutI CAGTG 3 cut(s) 83, 226, 702
Cac8I GCNNGC 4 cut(s) 362, 366, 448, 690
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 718, 847
Cfr42I CCGCGG 1 cut(s) 568
Csp6I GTAC 2 cut(s) 640, 811
CviAII CATG 8 cut(s) 68, 113, 438, 655, 663, 689, 760, 924
CviQI GTAC 2 cut(s) 640, 811
DdeI CTNAG 2 cut(s) 577, 965
DpnI GATC 4 cut(s) 512, 546, 701, 741
DpnII GATC 4 cut(s) 510, 544, 699, 739
DrdI GACNNNNNNGTC 1 cut(s) 860
DseDI GACNNNNNNGTC 1 cut(s) 860
EaeI YGGCCR 3 cut(s) 502, 756, 867
Eco105I TACGTA 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 718, 847
Eco57I CTGAAG 2 cut(s) 169, 909
EcoO109I RGGNCCY 1 cut(s) 718
EcoRI GAATTC 2 cut(s) 281, 960
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 8 cut(s) 71, 116, 441, 658, 666, 692, 763, 927
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 706, 738
FaqI GGGAC 4 cut(s) 67, 704, 856, 895
FatI CATG 8 cut(s) 67, 112, 437, 654, 662, 688, 759, 923
Fnu4HI GCNGC 7 cut(s) 369, 468, 471, 527, 565, 693, 997
FokI GGATG 4 cut(s) 61, 136, 150, 325
Fsp4HI GCNGC 7 cut(s) 369, 468, 471, 527, 565, 693, 997
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 586
GluI GCNGC 7 cut(s) 369, 468, 471, 527, 565, 693, 997
GsaI CCCAGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 4 cut(s) 504, 758, 869, 999
HapII CCGG 5 cut(s) 286, 300, 321, 501, 831
HhaI GCGC 1 cut(s) 587
Hin1II CATG 8 cut(s) 71, 116, 441, 658, 666, 692, 763, 927
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HindIII AAGCTT 3 cut(s) 93, 358, 786
HinfI GANTC 3 cut(s) 303, 615, 897
HpaII CCGG 5 cut(s) 286, 300, 321, 501, 831
HphI GGTGA 3 cut(s) 406, 584, 953
Hpy166II GTNNAC 4 cut(s) 83, 145, 391, 538
Hpy188I TCNGA 3 cut(s) 265, 523, 1023
Hpy188III TCNNGA 4 cut(s) 187, 286, 623, 792
Hpy8I GTNNAC 4 cut(s) 83, 145, 391, 538
Hpy99I CGWCG 2 cut(s) 278, 818
HpyAV CCTTC 2 cut(s) 473, 732
HpyCH4III ACNGT 4 cut(s) 87, 221, 463, 818
HpyCH4IV ACGT 3 cut(s) 204, 335, 597
HpyCH4V TGCA 2 cut(s) 763, 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 101, 357, 447, 452, 866
HpyF3I CTNAG 2 cut(s) 577, 965
HpySE526I ACGT 3 cut(s) 204, 335, 597
Hsp92II CATG 8 cut(s) 71, 116, 441, 658, 666, 692, 763, 927
HspAI GCGC 1 cut(s) 585
KflI GGGWCCC 1 cut(s) 718
Kpn2I TCCGGA 1 cut(s) 285
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 4 cut(s) 510, 544, 699, 739
Lsp1109I GCAGC 4 cut(s) 355, 479, 482, 538
LweI GCATC 2 cut(s) 128, 967
MaeI CTAG 1 cut(s) 384
MaeII ACGT 3 cut(s) 204, 335, 597
MaeIII GTNAC 4 cut(s) 154, 412, 572, 862
MalI GATC 4 cut(s) 512, 546, 701, 741
MboI GATC 4 cut(s) 510, 544, 699, 739
MboII GAAGA 6 cut(s) 175, 175, 202, 290, 638, 902
MfeI CAATTG 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 6 cut(s) 281, 328, 343, 506, 912, 960
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 5 cut(s) 390, 605, 860, 925, 979
Mox20I TGGCCA 1 cut(s) 758
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 758
MseI TTAA 5 cut(s) 18, 326, 804, 911, 915
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 2 cut(s) 473, 567
MspI CCGG 5 cut(s) 286, 300, 321, 501, 831
MspR9I CCNGG 2 cut(s) 321, 644
MunI CAATTG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 2 cut(s) 567, 585
MwoI GCNNNNNNNGC 6 cut(s) 68, 101, 357, 447, 452, 866
NciI CCSGG 1 cut(s) 321
NdeII GATC 4 cut(s) 510, 544, 699, 739
NlaIII CATG 8 cut(s) 71, 116, 441, 658, 666, 692, 763, 927
NlaIV GGNNCC 3 cut(s) 563, 719, 720
NmuCI GTSAC 4 cut(s) 154, 412, 572, 862
NspI RCATGY 3 cut(s) 441, 666, 692
PacI TTAATTAA 1 cut(s) 915
PaeI GCATGC 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 858
PfeI GAWTC 2 cut(s) 303, 897
PkrI GCNGC 7 cut(s) 370, 469, 472, 528, 566, 694, 998
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Ppu21I YACGTR 2 cut(s) 205, 598
PpuMI RGGWCCY 1 cut(s) 718
Psp5II RGGWCCY 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 563, 719, 720
PspPI GGNCC 2 cut(s) 718, 847
PspPPI RGGWCCY 1 cut(s) 718
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PstNI CAGNNNCTG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 641, 812
RsaNI GTAC 2 cut(s) 640, 811
SacII CCGCGG 1 cut(s) 568
SaqAI TTAA 5 cut(s) 18, 326, 804, 911, 915
SatI GCNGC 7 cut(s) 369, 468, 471, 527, 565, 693, 997
Sau3AI GATC 4 cut(s) 510, 544, 699, 739
Sau96I GGNCC 2 cut(s) 718, 847
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 2 cut(s) 321, 644
SfaNI GCATC 2 cut(s) 128, 967
SfcI CTRYAG 1 cut(s) 743
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 2 cut(s) 718, 847
SnaBI TACGTA 1 cut(s) 598
SphI GCATGC 1 cut(s) 692
Sse9I AATT 6 cut(s) 281, 328, 343, 506, 912, 960
SsiI CCGC 5 cut(s) 441, 565, 567, 692, 996
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 319, 642
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 4 cut(s) 87, 221, 463, 818
TaiI ACGT 3 cut(s) 207, 338, 600
TaqI TCGA 3 cut(s) 177, 198, 852
TaqII GACCGA 1 cut(s) 287
TasI AATT 6 cut(s) 281, 328, 343, 506, 912, 960
TauI GCSGC 3 cut(s) 567, 695, 999
TfiI GAWTC 2 cut(s) 303, 897
Tru1I TTAA 5 cut(s) 18, 326, 804, 911, 915
Tru9I TTAA 5 cut(s) 18, 326, 804, 911, 915
TscAI CASTG 3 cut(s) 90, 226, 709
TseFI GTSAC 4 cut(s) 154, 412, 572, 862
TseI GCWGC 4 cut(s) 368, 467, 470, 526
Tsp45I GTSAC 4 cut(s) 154, 412, 572, 862
TspDTI ATGAA 3 cut(s) 31, 105, 726
TspGWI ACGGA 3 cut(s) 150, 624, 860
TspRI CASTG 3 cut(s) 90, 226, 709
VpaK11BI GGWCC 2 cut(s) 718, 847
XapI RAATTY 3 cut(s) 281, 328, 960
XceI RCATGY 3 cut(s) 441, 666, 692
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.