RLG00000031732

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000341
Physical Location & Seq
Forward (+)
7852239 .. 7853661
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031732

Sequence Viewer

Length: 780 bp
ATGGCTTTGGAAGGAAACCTTGTGCTTCTCACACAGCTTGCTGTTGCCATATTATCCCTCAGTTTGTTGGGTACTTTGGCAATATCCCAGGCCACATCCCGCTCATCTTATGGAGTCAATTCCACCAACATTGCCCAAACCTTTGAGCAATGGATGGCAAAGTACGGCCGCATTTACCCTAACGGCCAGGAGAAGGGAAAACGTTCTGCCATATTCCGGACCAACTTGGAGTATGTTGAGAGCTTCAACAAACAAGAGAGTTGTTGTTGGGCTTTCTCAGCAGTGGCAGCTGTGGAAGGGATTACCAAAATAAGAATTGGCCAATTGATCCCGCTATCCGAGCAACAACTTGTGGACTGCAATAGAGATATGTACAACATTGGTTGTGAGGGTGGTAATATGGTAGATGCCTTCCGGTACATCAAAACAAATGGTGGAATCACCAGCGAAGATAATTACCAGTACACTGCTAGGGACGGAGCGTGTTACAGTAATAAAGAAAAACAGCATGATGCCACAATAACTGGTTTTGAACAAGTGCCTCGAGGGGAAATGCATTTGCTCAAGGCGGTTTCCATGCAACCAGTCTCGGTCCACATTGATGCCCATGGAAGAGACTTTAAGCACTACTCGAGTGGGGTATTTTCGGGAGATTGTGGAACAAAACTTAACCACGCTGTTGTAGTCATCGGGTATGGAAAAACTGAAGACGGCATTGACTACTGGTTACTGAAAAACTCATGGAGTGAGCAATGGGGTGAAAATGGCTACATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

260

Amino Acids

28.79

Weight (kDa)

6.08

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 48 - 85 2.3e-10 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 73 - 259 1.8e-61 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 4 cut(s) 100, 169, 332, 569
AclI AACGTT 1 cut(s) 202
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 3 cut(s) 166, 184, 319
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 5 cut(s) 73, 164, 374, 419, 464
AfiI CCNNNNNNNGG 2 cut(s) 193, 216
AgsI TTSAA 2 cut(s) 247, 533
AjnI CCWGG 2 cut(s) 87, 186
AluBI AGCT 3 cut(s) 37, 243, 290
AluI AGCT 3 cut(s) 37, 243, 290
Alw26I GTCTC 2 cut(s) 592, 609
AlwI GGATC 1 cut(s) 322
Ama87I CYCGRG 2 cut(s) 543, 631
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 4 cut(s) 90, 166, 184, 319
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 219, 592
AsuHPI GGTGA 2 cut(s) 433, 770
AvaI CYCGRG 2 cut(s) 543, 631
AvaII GGWCC 2 cut(s) 219, 592
BalI TGGCCA 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 148
BceAI ACGGC 3 cut(s) 181, 199, 727
BciT130I CCWGG 2 cut(s) 89, 188
BcoDI GTCTC 2 cut(s) 592, 609
BfaI CTAG 1 cut(s) 471
BisI GCNGC 2 cut(s) 169, 288
BlsI GCNGC 2 cut(s) 170, 289
Bme1390I CCNGG 2 cut(s) 89, 188
Bme18I GGWCC 2 cut(s) 219, 592
BmeT110I CYCGRG 2 cut(s) 543, 631
BmgT120I GGNCC 2 cut(s) 219, 592
BmrFI CCNGG 2 cut(s) 89, 188
BmsI GCATC 3 cut(s) 397, 502, 592
BpiI GAAGAC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 87, 607
BsaWI WCCGGW 2 cut(s) 216, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 216
Bse1I ACTGG 4 cut(s) 460, 529, 584, 728
Bse3DI GCAATG 3 cut(s) 129, 155, 758
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 2 cut(s) 89, 188
BseDI CCNNGG 2 cut(s) 87, 607
BseGI GGATG 2 cut(s) 95, 159
BseLI CCNNNNNNNGG 2 cut(s) 193, 216
BseMI GCAATG 3 cut(s) 129, 155, 758
BseMII CTCAG 2 cut(s) 73, 291
BseNI ACTGG 4 cut(s) 460, 529, 584, 728
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 4 cut(s) 92, 168, 186, 321
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 2 cut(s) 543, 631
BsiSI CCGG 2 cut(s) 217, 415
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 193, 216
BsmAI GTCTC 2 cut(s) 592, 609
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 4 cut(s) 92, 168, 186, 321
BsoBI CYCGRG 2 cut(s) 543, 631
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 4 cut(s) 100, 169, 332, 569
BspANI GGCC 4 cut(s) 92, 168, 186, 321
BspCNI CTCAG 2 cut(s) 72, 290
BspEI TCCGGA 1 cut(s) 216
BspPI GGATC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 3 cut(s) 129, 155, 758
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 4 cut(s) 460, 529, 584, 728
BssECI CCNNGG 2 cut(s) 87, 607
BssMI GATC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 2 cut(s) 89, 188
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 1 cut(s) 607
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 59, 277
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 2 cut(s) 95, 159
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 2 cut(s) 592, 609
BstMBI GATC 1 cut(s) 327
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 278, 287, 340
BstNI CCWGG 2 cut(s) 89, 188
BstSCI CCNGG 2 cut(s) 87, 186
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 714
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 4 cut(s) 92, 168, 186, 321
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 95, 159
BtsI GCAGTG 2 cut(s) 288, 465
BtsIMutI CAGTG 2 cut(s) 288, 465
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 219, 592
Csp6I GTAC 5 cut(s) 72, 163, 373, 418, 463
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 5 cut(s) 509, 577, 608, 741, 772
CviQI GTAC 5 cut(s) 72, 163, 373, 418, 463
DdeI CTNAG 2 cut(s) 59, 277
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
EaeI YGGCCR 3 cut(s) 166, 184, 319
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 219, 592
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 2 cut(s) 543, 631
EcoRII CCWGG 2 cut(s) 87, 186
EcoT14I CCWWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 5 cut(s) 512, 580, 611, 744, 775
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 488
FatI CATG 5 cut(s) 508, 576, 607, 740, 771
FauI CCCGC 2 cut(s) 107, 339
Fnu4HI GCNGC 2 cut(s) 169, 288
FokI GGATG 2 cut(s) 82, 166
Fsp4HI GCNGC 2 cut(s) 169, 288
FspBI CTAG 1 cut(s) 471
GluI GCNGC 2 cut(s) 169, 288
HaeIII GGCC 4 cut(s) 92, 168, 186, 321
HapII CCGG 2 cut(s) 217, 415
Hin1II CATG 5 cut(s) 512, 580, 611, 744, 775
HinfI GANTC 2 cut(s) 114, 438
HpaII CCGG 2 cut(s) 217, 415
HphI GGTGA 2 cut(s) 433, 770
Hpy166II GTNNAC 3 cut(s) 355, 465, 595
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 217, 648
Hpy8I GTNNAC 3 cut(s) 355, 465, 595
HpyAV CCTTC 4 cut(s) 5, 187, 290, 421
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 360, 556, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 287, 340
HpyF3I CTNAG 2 cut(s) 59, 277
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 5 cut(s) 512, 580, 611, 744, 775
Kpn2I TCCGGA 1 cut(s) 216
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 479
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 397, 502, 592
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 485, 726
MalI GATC 1 cut(s) 329
MbiI CCGCTC 1 cut(s) 102
MboI GATC 1 cut(s) 327
MboII GAAGA 3 cut(s) 461, 624, 719
MfeI CAATTG 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 4 cut(s) 118, 315, 323, 454
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 68, 382, 539, 552
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 558
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 321
MseI TTAA 2 cut(s) 621, 669
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 217, 415
MspR9I CCNGG 2 cut(s) 89, 188
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 2 cut(s) 89, 188
MwoI GCNNNNNNNGC 3 cut(s) 278, 287, 340
NcoI CCATGG 1 cut(s) 607
NdeII GATC 1 cut(s) 327
NlaIII CATG 5 cut(s) 512, 580, 611, 744, 775
NsiI ATGCAT 1 cut(s) 558
PaeR7I CTCGAG 2 cut(s) 543, 631
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 438
PkrI GCNGC 2 cut(s) 170, 289
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp1406I AACGTT 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 87, 186
PspGI CCWGG 2 cut(s) 87, 186
PspPI GGNCC 2 cut(s) 219, 592
PspXI VCTCGAGB 2 cut(s) 543, 631
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 5 cut(s) 73, 164, 374, 419, 464
RsaNI GTAC 5 cut(s) 72, 163, 373, 418, 463
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 621, 669
SatI GCNGC 2 cut(s) 169, 288
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 2 cut(s) 219, 592
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 89, 188
SetI ASST 6 cut(s) 21, 39, 143, 205, 245, 292
SfaNI GCATC 3 cut(s) 397, 502, 592
Sfr274I CTCGAG 2 cut(s) 543, 631
SinI GGWCC 2 cut(s) 219, 592
SlaI CTCGAG 2 cut(s) 543, 631
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 3 cut(s) 543, 563, 631
SmoI CTYRAG 3 cut(s) 543, 563, 631
Sse9I AATT 4 cut(s) 118, 315, 323, 454
SsiI CCGC 4 cut(s) 100, 169, 332, 569
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 87, 186
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 544, 632
TaqII GACCGA 1 cut(s) 580
TasI AATT 4 cut(s) 118, 315, 323, 454
TatI WGTACW 2 cut(s) 372, 462
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 2 cut(s) 621, 669
Tru9I TTAA 2 cut(s) 621, 669
TscAI CASTG 2 cut(s) 288, 472
TseI GCWGC 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 288, 472
VpaK11BI GGWCC 2 cut(s) 219, 592
XhoI CTCGAG 2 cut(s) 543, 631
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.