RchiOBHm_Chr5g0023691

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000341
Physical Location & Seq
Forward (+)
17827212 .. 17828478
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30354

Sequence Viewer

Length: 930 bp
ATGGCCGAGCATGGGCGTGTCTATCCGGATAGCACAGAGAAGAGAAGGCGTTTTGTCATATTCAAGGAGAATCTAGAGTTTGTGGAGAAATTCAACAATGACGGGGAGAAGACCTACAAGTTAAGCGTCAATGAGTTCTCCGATATGACCAATGAAGAATTCCTCAGCCATCATACTGGATACAAAACGCCCACAGGCTCCAGTTTAACAAGATCACCCAAACAAATGCCCGGCCTTTATTTTCCACGCCCACACATTGATTATCCAGATAGCGTTGACTGGAGGGAGCAAGGAGCTGTCACCGATATTAAGAATCAAATTCCATGTAATGCTTGCTGGGCATTTGCGGCGATGGCAGCCGTGGAAGGGATTACATTTATCAAAACTGGCCAACTGGTCTCGTTGTCCGAGCAACAACTTTTGGACTGTGACAAGTCGAGCAATGGCTGCCAAGAAGGTGACATGGAAGCAGCTTATACATACATAATAGAAAATGGAGGAACTGCTACTGAAGAAGAGTACCCATACCTGAACACTTCTGTCCGCCAAAAATGCGACACTCAAAAGGAAAAAAAGCATGCTACCCATATAAGTGATTTTGTATTTGTACCAGAGAGCAATCAACGTGCTCTTCACAAGGCTGTTTCCATGCAACCAGTCTCGGTTGCCATCAGCGCTAATGGAACAGAATTTAAGTCATACAAACGTGGAGTGTTTTCAGGTCCTTGTGATGGCCCCCTGAACCATGCTGTAACAATTATTGGGTACGGAACTGAAAACGGCACCGGCACCAACTACTGGCTAATTAAGAATTCATGGGGGGAGACGTGGGGTGAAAAGGGCTACATGAGAATTCTTAGAAGTACTACTTCAAGTATGGATGATGGTCTTTGTGGCCTTGCTATCCAGGCATATTATCCGATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

309

Amino Acids

34.64

Weight (kDa)

5.55

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 54 1.8e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 89 - 308 1.1e-73 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 782, 788
AccB7I CCANNNNNTGG 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 2 cut(s) 347, 544
AcoI YGGCCR 2 cut(s) 3, 388
AcsI RAATTY 6 cut(s) 89, 158, 318, 689, 811, 852
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 4 cut(s) 521, 609, 767, 865
AfeI AGCGCT 1 cut(s) 676
AfiI CCNNNNNNNGG 4 cut(s) 12, 366, 731, 798
AgsI TTSAA 3 cut(s) 64, 94, 873
AjiI CACGTC 1 cut(s) 828
AjnI CCWGG 1 cut(s) 906
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 296, 473
AluI AGCT 2 cut(s) 296, 473
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 3 cut(s) 403, 664, 818
Aor13HI TCCGGA 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 676
AoxI GGCC 5 cut(s) 3, 232, 388, 733, 895
ApeKI GCWGC 3 cut(s) 356, 447, 470
ApoI RAATTY 6 cut(s) 89, 158, 318, 689, 811, 852
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 722, 734
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 4 cut(s) 207, 292, 470, 845
AvaII GGWCC 1 cut(s) 722
BalI TGGCCA 1 cut(s) 390
BanI GGYRCC 2 cut(s) 782, 788
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 631
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 368, 434, 482
BccI CCATC 5 cut(s) 177, 346, 677, 725, 878
BceAI ACGGC 2 cut(s) 344, 796
BciT130I CCWGG 1 cut(s) 908
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 403, 664, 818
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 678
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 4 cut(s) 348, 357, 448, 471
BlsI GCNGC 4 cut(s) 349, 358, 449, 472
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 2 cut(s) 231, 908
Bme18I GGWCC 1 cut(s) 722
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 2 cut(s) 722, 734
BmiI GGNNCC 4 cut(s) 199, 736, 784, 790
BmrFI CCNGG 2 cut(s) 231, 908
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 184, 301
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 366, 731, 798
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 7 cut(s) 181, 201, 284, 391, 399, 656, 803
Bse3DI GCAATG 1 cut(s) 448
BseAI TCCGGA 1 cut(s) 25
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 886
BseLI CCNNNNNNNGG 4 cut(s) 12, 366, 731, 798
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 7 cut(s) 181, 201, 284, 391, 399, 656, 803
BseXI GCAGC 3 cut(s) 368, 434, 482
BseYI CCCAGC 1 cut(s) 336
BshFI GGCC 5 cut(s) 5, 234, 390, 735, 897
BshNI GGYRCC 2 cut(s) 782, 788
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 3 cut(s) 26, 231, 786
BslI CCNNNNNNNGG 4 cut(s) 12, 366, 731, 798
BsmAI GTCTC 3 cut(s) 403, 664, 818
BsmBI CGTCTC 1 cut(s) 818
BsnI GGCC 5 cut(s) 5, 234, 390, 735, 897
Bso31I GGTCTC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 631
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 2 cut(s) 347, 544
BspANI GGCC 5 cut(s) 5, 234, 390, 735, 897
BspCNI CTCAG 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 199, 736, 784, 790
BspQI GCTCTTC 1 cut(s) 636
BspT107I GGYRCC 2 cut(s) 782, 788
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 7 cut(s) 181, 201, 284, 391, 399, 656, 803
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 3 cut(s) 35, 510, 636
BstAPI GCANNNNNTGC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 334, 579
BstDEI CTNAG 2 cut(s) 164, 857
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 886
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 3 cut(s) 403, 664, 818
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 8 cut(s) 338, 347, 353, 356, 447, 552, 674, 908
BstNI CCWGG 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 229, 906
BstV1I GCAGC 3 cut(s) 368, 434, 482
BstV2I GAAGAC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 5 cut(s) 5, 234, 390, 735, 897
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 365
BtrI CACGTC 1 cut(s) 828
BtsCI GGATG 1 cut(s) 886
Cac8I GCNNGC 2 cut(s) 334, 579
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 722, 734
CseI GACGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 520, 608, 766, 864
CviAII CATG 8 cut(s) 11, 324, 463, 578, 649, 746, 816, 847
CviQI GTAC 4 cut(s) 520, 608, 766, 864
DdeI CTNAG 2 cut(s) 164, 857
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 3, 388
Eam1104I CTCTTC 3 cut(s) 35, 510, 636
EarI CTCTTC 3 cut(s) 35, 510, 636
EciI GGCGGA 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 722
Eco47III AGCGCT 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 722
EcoRI GAATTC 3 cut(s) 158, 811, 852
EcoRII CCWGG 1 cut(s) 906
Esp3I CGTCTC 1 cut(s) 818
FaeI CATG 8 cut(s) 14, 327, 466, 581, 652, 749, 819, 850
FalI AAGNNNNNCTT 2 cut(s) 853, 885
FatI CATG 8 cut(s) 10, 323, 462, 577, 648, 745, 815, 846
Fnu4HI GCNGC 4 cut(s) 348, 357, 448, 471
FokI GGATG 1 cut(s) 893
Fsp4HI GCNGC 4 cut(s) 348, 357, 448, 471
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 676
GluI GCNGC 4 cut(s) 348, 357, 448, 471
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 2 cut(s) 184, 301
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 5 cut(s) 5, 234, 390, 735, 897
HapII CCGG 3 cut(s) 26, 231, 786
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 677
Hin1II CATG 8 cut(s) 14, 327, 466, 581, 652, 749, 819, 850
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 70, 313
HpaII CCGG 3 cut(s) 26, 231, 786
HphI GGTGA 4 cut(s) 207, 292, 470, 845
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 142, 409, 921
Hpy188III TCNNGA 3 cut(s) 26, 74, 266
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 39, 359, 449
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 3 cut(s) 625, 706, 827
HpyCH4V TGCA 1 cut(s) 652
HpyF10VI GCNNNNNNNGC 8 cut(s) 338, 347, 353, 356, 447, 552, 674, 908
HpyF3I CTNAG 2 cut(s) 164, 857
HpySE526I ACGT 3 cut(s) 625, 706, 827
Hsp92II CATG 8 cut(s) 14, 327, 466, 581, 652, 749, 819, 850
HspAI GCGC 1 cut(s) 675
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 3 cut(s) 203, 286, 293
Lsp1109I GCAGC 3 cut(s) 368, 434, 482
MaeI CTAG 1 cut(s) 74
MaeII ACGT 3 cut(s) 625, 706, 827
MaeIII GTNAC 4 cut(s) 298, 428, 458, 751
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 6 cut(s) 52, 121, 167, 524, 527, 623
MhlI GDGCHC 1 cut(s) 631
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 8 cut(s) 89, 158, 318, 689, 756, 804, 811, 852
MluNI TGGCCA 1 cut(s) 390
MnlI CCTC 3 cut(s) 173, 276, 491
Mox20I TGGCCA 1 cut(s) 390
MroI TCCGGA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 390
MseI TTAA 5 cut(s) 122, 206, 309, 693, 807
MslI CAYNNNNRTG 2 cut(s) 15, 591
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 3 cut(s) 26, 231, 786
MspR9I CCNGG 2 cut(s) 231, 908
MvaI CCWGG 1 cut(s) 908
MwoI GCNNNNNNNGC 8 cut(s) 338, 347, 353, 356, 447, 552, 674, 908
NciI CCSGG 1 cut(s) 231
NdeII GATC 1 cut(s) 212
NlaIII CATG 8 cut(s) 14, 327, 466, 581, 652, 749, 819, 850
NlaIV GGNNCC 4 cut(s) 199, 736, 784, 790
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 298, 428, 458
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 70, 313
PflMI CCANNNNNTGG 1 cut(s) 798
PkrI GCNGC 4 cut(s) 349, 358, 449, 472
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 906
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 1 cut(s) 906
PspN4I GGNNCC 4 cut(s) 199, 736, 784, 790
PspPI GGNCC 2 cut(s) 722, 734
PspPPI RGGWCCY 1 cut(s) 722
RsaI GTAC 4 cut(s) 521, 609, 767, 865
RsaNI GTAC 4 cut(s) 520, 608, 766, 864
RseI CAYNNNNRTG 2 cut(s) 15, 591
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 5 cut(s) 122, 206, 309, 693, 807
SatI GCNGC 4 cut(s) 348, 357, 448, 471
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 2 cut(s) 722, 734
ScaI AGTACT 1 cut(s) 865
ScrFI CCNGG 2 cut(s) 231, 908
SduI GDGCHC 1 cut(s) 631
SetI ASST 9 cut(s) 116, 298, 460, 475, 531, 628, 709, 724, 830
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 15, 591
SphI GCATGC 1 cut(s) 581
Sse9I AATT 8 cut(s) 89, 158, 318, 689, 756, 804, 811, 852
SsiI CCGC 2 cut(s) 347, 544
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 229, 906
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 3 cut(s) 628, 709, 830
TaqI TCGA 1 cut(s) 437
TasI AATT 8 cut(s) 89, 158, 318, 689, 756, 804, 811, 852
TatI WGTACW 1 cut(s) 863
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 70, 313
Tru1I TTAA 5 cut(s) 122, 206, 309, 693, 807
Tru9I TTAA 5 cut(s) 122, 206, 309, 693, 807
TseFI GTSAC 3 cut(s) 298, 428, 458
TseI GCWGC 3 cut(s) 356, 447, 470
Tsp45I GTSAC 3 cut(s) 298, 428, 458
TspDTI ATGAA 2 cut(s) 168, 804
TspGWI ACGGA 1 cut(s) 783
Van91I CCANNNNNTGG 1 cut(s) 798
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 6 cut(s) 89, 158, 318, 689, 811, 852
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 581
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.