FvH4_3g14380

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000341
Physical Location & Seq
Forward (+)
8858933 .. 8860554
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14380.t1

Sequence Viewer

Length: 1077 bp
ATGGCTTTTGAGCAAAACCTTGTGATGATTTTCATATTCATCGTCTTGGGAATTCTTGCATCCCAAGCCACATCTCGTGCATCCTACAAAGCTAATTCCATTGCTGACAAACATGAGCAATGGATGGCTAAGCATGGACGCATTTACCGAGACAGCAAAGAGAAGGAAAGACGTTTCGCCATATTCAAGAAGAATGTGGAGTTTGTGGAGAAATTCAATAGTGAAGGGAATGCGACATACACGTTAAGCGTCAACAAATTTTCCGATATGACAAATGAAGAATTCCTCAGACATCATGCTGGGTTCAAAATGCCTACGACCGTCTCAAGTTCAACAACTTCATCATCCGAAGATCAATTGTCCACTAAACAAAGCGGGCCAAATAATACGACTAGTGATGATATTCCAGCAAGCATCGACTGGAGGGAACATGGGGCTGTCACTCCTATAAAGGATCAAGGCAAATGTGGTGCTTGCTGGGCATTTACGGTGGTTGCAGCTGTGGAAGGAATTACAAAAATCAAAACCGGCAAATTGATCTCACTGTCCGAGCAACAACTTGTGGACTGCGACGTGCAAAACAATGGCTGTGACGCTAGTGACATTGATGTTGCTTTCGAATACATCAAGCAAAATGGAGGGATCGCCAAAGAGAAAAATTACCCATACCGGGGCAACAACAACAAAAAATGCAACGCTAAAAAGGAATCTCAGCATGCTGCCAAGATAACTGGCTATAGAACTATTCCTACTCAAAGATATGATCTCCTACTCATGGCTGTGTCCATCCAACCAGTCTCAGTTGCCATTGACGTTCAAGGAGATGCCTTTCAATCATACCATAAGGGGGTGTTCTCAGGTTCATGCGGTCACGACGTGAATCATGCTGTAACCATTATTGGGTACGGGACGAATGAAGACGGCACCAAGTATTGGCTAGTTAAGAATTCATGGGGACTGGACTGGGGCGACAATGGCTACATGAAAATTCTTAGAGCTAATCTTAGCACGACAGGCCCTTCTCTCTCAGAAGGTCATTGTGGCCTTAACCTGTATGCTTACTATCCCACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.63

Weight (kDa)

7.61

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 7.6e-22 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 135 - 356 1.8e-74 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 933
AciI CCGC 2 cut(s) 375, 867
AclWI GGATC 2 cut(s) 462, 650
AcsI RAATTY 6 cut(s) 51, 212, 257, 281, 946, 987
AdeI CACNNNGTG 1 cut(s) 877
AfaI GTAC 1 cut(s) 905
AfiI CCNNNNNNNGG 6 cut(s) 670, 671, 775, 847, 900, 933
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 6 cut(s) 187, 217, 307, 333, 818, 833
AhlI ACTAGT 1 cut(s) 392
AjiI CACGTC 2 cut(s) 574, 877
AluBI AGCT 3 cut(s) 92, 500, 998
AluI AGCT 3 cut(s) 92, 500, 998
Alw26I GTCTC 3 cut(s) 144, 328, 802
AlwI GGATC 2 cut(s) 462, 650
AoxI GGCC 3 cut(s) 377, 1015, 1042
ApeKI GCWGC 2 cut(s) 497, 719
ApoI RAATTY 6 cut(s) 51, 212, 257, 281, 946, 987
AspS9I GGNCC 2 cut(s) 377, 1016
AsuC2I CCSGG 1 cut(s) 671
AsuII TTCGAA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 923
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 924
BbvI GCAGC 2 cut(s) 509, 706
BccI CCATC 2 cut(s) 118, 794
BceAI ACGGC 1 cut(s) 937
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 3 cut(s) 144, 328, 802
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 3 cut(s) 393, 597, 938
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 2 cut(s) 498, 720
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 2 cut(s) 499, 721
Bme1390I CCNGG 1 cut(s) 671
BmgBI CACGTC 2 cut(s) 574, 877
BmgT120I GGNCC 2 cut(s) 377, 1016
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 1 cut(s) 671
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 4 cut(s) 68, 89, 423, 814
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 1 cut(s) 924
BpmI CTGGAG 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 670
Bsc4I CCNNNNNNNGG 6 cut(s) 670, 671, 775, 847, 900, 933
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 5 cut(s) 425, 736, 794, 963, 968
Bse3DI GCAATG 2 cut(s) 99, 125
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 5 cut(s) 59, 80, 129, 344, 786
BseLI CCNNNNNNNGG 6 cut(s) 670, 671, 775, 847, 900, 933
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 5 cut(s) 301, 725, 813, 870, 1041
BseNI ACTGG 5 cut(s) 425, 736, 794, 963, 968
BseXI GCAGC 2 cut(s) 509, 706
BseYI CCCAGC 2 cut(s) 299, 477
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 3 cut(s) 379, 1017, 1044
BshNI GGYRCC 1 cut(s) 923
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 528, 670
BslFI GGGAC 2 cut(s) 922, 969
BslI CCNNNNNNNGG 6 cut(s) 670, 671, 775, 847, 900, 933
BsmAI GTCTC 3 cut(s) 144, 328, 802
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 922, 969
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 379, 1017, 1044
Bsp119I TTCGAA 1 cut(s) 618
Bsp143I GATC 5 cut(s) 352, 454, 537, 642, 763
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 2 cut(s) 375, 867
BspANI GGCC 3 cut(s) 379, 1017, 1044
BspCNI CTCAG 5 cut(s) 300, 724, 812, 869, 1040
BspLI GGNNCC 1 cut(s) 925
BspPI GGATC 2 cut(s) 462, 650
BspT104I TTCGAA 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 2 cut(s) 99, 125
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 5 cut(s) 425, 736, 794, 963, 968
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 5 cut(s) 352, 454, 537, 642, 763
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 322, 490, 546
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 4 cut(s) 377, 412, 475, 717
BstDEI CTNAG 8 cut(s) 129, 287, 711, 799, 856, 992, 1004, 1027
BstF5I GGATG 5 cut(s) 59, 80, 129, 344, 786
BstKTI GATC 5 cut(s) 355, 457, 540, 645, 766
BstMAI GTCTC 3 cut(s) 144, 328, 802
BstMBI GATC 5 cut(s) 352, 454, 537, 642, 763
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 65, 479, 975, 1014
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 509, 706
BstV2I GAAGAC 1 cut(s) 924
BsuRI GGCC 3 cut(s) 379, 1017, 1044
BtrI CACGTC 2 cut(s) 574, 877
BtsCI GGATG 5 cut(s) 59, 80, 129, 344, 786
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 2 cut(s) 542, 1068
Cac8I GCNNGC 4 cut(s) 377, 412, 475, 717
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 2 cut(s) 377, 1016
CseI GACGC 3 cut(s) 147, 238, 602
Csp6I GTAC 1 cut(s) 904
CviQI GTAC 1 cut(s) 904
DdeI CTNAG 8 cut(s) 129, 287, 711, 799, 856, 992, 1004, 1027
DpnI GATC 5 cut(s) 354, 456, 539, 644, 765
DpnII GATC 5 cut(s) 352, 454, 537, 642, 763
DraIII CACNNNGTG 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 1016
EcoRI GAATTC 3 cut(s) 51, 281, 946
Esp3I CGTCTC 1 cut(s) 328
FaqI GGGAC 2 cut(s) 922, 969
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 498, 720
FokI GGATG 5 cut(s) 46, 67, 136, 331, 773
Fsp4HI GCNGC 2 cut(s) 498, 720
FspBI CTAG 3 cut(s) 393, 597, 938
GluI GCNGC 2 cut(s) 498, 720
GsaI CCCAGC 2 cut(s) 303, 481
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 3 cut(s) 379, 1017, 1044
HapII CCGG 2 cut(s) 528, 670
HgaI GACGC 3 cut(s) 147, 238, 602
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 707, 880
HpaII CCGG 2 cut(s) 528, 670
Hpy166II GTNNAC 3 cut(s) 253, 363, 565
Hpy188I TCNGA 5 cut(s) 265, 290, 349, 550, 1030
Hpy188III TCNNGA 2 cut(s) 187, 872
Hpy8I GTNNAC 3 cut(s) 253, 363, 565
Hpy99I CGWCG 2 cut(s) 575, 878
HpyAV CCTTC 5 cut(s) 157, 218, 500, 1025, 1029
HpyCH4III ACNGT 3 cut(s) 322, 490, 546
HpyCH4IV ACGT 5 cut(s) 172, 242, 573, 813, 876
HpyCH4V TGCA 6 cut(s) 59, 80, 497, 577, 693, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 479, 975, 1014
HpyF3I CTNAG 8 cut(s) 129, 287, 711, 799, 856, 992, 1004, 1027
HpySE526I ACGT 5 cut(s) 172, 242, 573, 813, 876
Kzo9I GATC 5 cut(s) 352, 454, 537, 642, 763
Lsp1109I GCAGC 2 cut(s) 509, 706
LweI GCATC 4 cut(s) 68, 89, 423, 814
MaeI CTAG 3 cut(s) 393, 597, 938
MaeII ACGT 5 cut(s) 172, 242, 573, 813, 876
MaeIII GTNAC 5 cut(s) 439, 590, 599, 869, 889
MalI GATC 5 cut(s) 354, 456, 539, 644, 765
MboI GATC 5 cut(s) 352, 454, 537, 642, 763
MboII GAAGA 4 cut(s) 202, 290, 362, 929
MfeI CAATTG 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 814
MnlI CCTC 3 cut(s) 296, 417, 632
MseI TTAA 3 cut(s) 245, 942, 1047
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 2 cut(s) 528, 670
MspR9I CCNGG 1 cut(s) 671
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 235
MwoI GCNNNNNNNGC 4 cut(s) 65, 479, 975, 1014
NciI CCSGG 1 cut(s) 671
NdeII GATC 5 cut(s) 352, 454, 537, 642, 763
NlaIV GGNNCC 1 cut(s) 925
NmuCI GTSAC 4 cut(s) 439, 590, 599, 869
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 618
PaeI GCATGC 1 cut(s) 719
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 707, 880
PflMI CCANNNNNTGG 1 cut(s) 933
PkrI GCNGC 2 cut(s) 499, 721
PspFI CCCAGC 2 cut(s) 299, 477
PspN4I GGNNCC 1 cut(s) 925
PspPI GGNCC 2 cut(s) 377, 1016
PsrI GAACNNNNNNTAC 2 cut(s) 733, 765
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 905
RsaNI GTAC 1 cut(s) 904
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 3 cut(s) 245, 942, 1047
SatI GCNGC 2 cut(s) 498, 720
Sau3AI GATC 5 cut(s) 352, 454, 537, 642, 763
Sau96I GGNCC 2 cut(s) 377, 1016
ScrFI CCNGG 1 cut(s) 671
SfaNI GCATC 4 cut(s) 68, 89, 423, 814
SfcI CTRYAG 1 cut(s) 736
SfuI TTCGAA 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
SpeI ACTAGT 1 cut(s) 392
SphI GCATGC 1 cut(s) 719
SsiI CCGC 2 cut(s) 375, 867
SspMI CTAG 3 cut(s) 393, 597, 938
StyD4I CCNGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 322, 490, 546
TaiI ACGT 5 cut(s) 175, 245, 576, 816, 879
TaqI TCGA 2 cut(s) 417, 618
TfiI GAWTC 2 cut(s) 707, 880
Tru1I TTAA 3 cut(s) 245, 942, 1047
Tru9I TTAA 3 cut(s) 245, 942, 1047
TscAI CASTG 2 cut(s) 549, 1075
TseFI GTSAC 4 cut(s) 439, 590, 599, 869
TseI GCWGC 2 cut(s) 497, 719
Tsp45I GTSAC 4 cut(s) 439, 590, 599, 869
TspDTI ATGAA 8 cut(s) 22, 28, 291, 330, 852, 930, 939, 998
TspRI CASTG 2 cut(s) 549, 1075
Van91I CCANNNNNTGG 1 cut(s) 933
XapI RAATTY 6 cut(s) 51, 212, 257, 281, 946, 987
XceI RCATGY 1 cut(s) 719
XspI CTAG 3 cut(s) 393, 597, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.