Rmu_sc0007816.1_g000005

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007816.1
OG0000341
Physical Location & Seq
Reverse (-)
30239 .. 31348
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007816.1_g000005.1.cds

Sequence Viewer

Length: 1038 bp
atggcttttgaacgagttagccttgtgattgttactacactggtcaccatgggagttttggcttcgcaagccgcatccctttcactgtacgaagcttccattgctgagaaacatgagcaatggatggagaagtacagacgcgtttaccccaacaatgcagagaagcaaaggcgtttcgctatcttcatgaagaatgtcgaatttgtggagaaatccaacagtgaagggaacaagacttacaagttgagcatcaacgaattttctgatatgactaatgaagaattcatgagacatcatactggatacaaaatccccaccagctcaagttcaacctatttcaaacataaatcttttcggtaccaaagcttggctgcaactgaggttccagctagcatggactggagggagcaaggagctgttacccgcataagaaatcaaggtcaatgtggtgcttgttgggcatttaccgtagtggcaacagtagaagggctaatccaaatcaaaactggccaattgatcccgctgtccgagcaacaacttgtcgactgtgatcacaacaacaatggctgcgacggtggcagtgaagtgaatgcatttaaatacataatacaaaatggaggaatcgctagtgaagaaaattaccaataccagagcacagacatgggatcatgtgacactaacaaggaaagtgaccatgctgcccagatcactggttatgaaatagtcccttccaaaagtgaagacgatctactcaaggctgtgtccaagcaaccagtctcggttagcattgatgcttctggtgtagcgtttcagcattacagtagtggggtgttttccggtgattgcgggacgaacctccatcatgctgttgcagccattgggtacggaacaactgaaggtgacattgactattggttattgaagaattcgtggggtgagacttggggtgaaaatggctatatgaaaattcttagaaacgttgatgccccagaaggtaagtgtggccttgctatcagggcttcctatccaactgcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

345

Amino Acids

38.23

Weight (kDa)

5.44

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 1 cut(s) 543
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 72, 424, 521, 846
AclI AACGTT 1 cut(s) 978
AclWI GGATC 2 cut(s) 511, 673
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 5 cut(s) 200, 257, 281, 925, 966
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 4 cut(s) 89, 134, 359, 884
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 4 cut(s) 11, 330, 340, 922
AluBI AGCT 5 cut(s) 95, 321, 366, 389, 416
AluI AGCT 5 cut(s) 95, 321, 366, 389, 416
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 283, 781, 932
AlwI GGATC 2 cut(s) 511, 673
AoxI GGCC 2 cut(s) 508, 1003
ApeKI GCWGC 4 cut(s) 371, 567, 698, 872
ApoI RAATTY 5 cut(s) 200, 257, 281, 925, 966
Asp718I GGTACC 1 cut(s) 357
AsuHPI GGTGA 5 cut(s) 37, 851, 911, 947, 959
AsuNHI GCTAGC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 4 cut(s) 358, 554, 685, 884
BccI CCATC 2 cut(s) 118, 867
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 3 cut(s) 283, 781, 932
BfaI CTAG 2 cut(s) 390, 627
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 5 cut(s) 72, 372, 568, 699, 873
BlsI GCNGC 5 cut(s) 73, 373, 569, 700, 874
BmiI GGNNCC 2 cut(s) 359, 384
BmsI GCATC 4 cut(s) 83, 258, 781, 973
BmtI GCTAGC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 2 cut(s) 307, 737
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
Bse3DI GCAATG 2 cut(s) 99, 125
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 74, 129
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 2 cut(s) 96, 369
BseNI ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
BseXI GCAGC 4 cut(s) 358, 554, 685, 884
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 510, 1005
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 2 cut(s) 710, 862
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 283, 781, 932
BsmFI GGGAC 2 cut(s) 710, 862
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 2 cut(s) 510, 1005
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 5 cut(s) 516, 550, 665, 705, 745
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 72, 424, 521, 846
BspANI GGCC 2 cut(s) 510, 1005
BspCNI CTCAG 2 cut(s) 97, 370
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 2 cut(s) 186, 285
BspLI GGNNCC 2 cut(s) 359, 384
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 511, 673
BspT107I GGYRCC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 99, 125
BsrI ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 516, 550, 665, 705, 745
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 7 cut(s) 87, 221, 469, 481, 548, 575, 821
BstC8I GCNNGC 2 cut(s) 69, 391
BstDEI CTNAG 3 cut(s) 105, 378, 971
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 74, 129
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 5 cut(s) 519, 553, 668, 708, 748
BstMAI GTCTC 3 cut(s) 283, 781, 932
BstMBI GATC 5 cut(s) 516, 550, 665, 705, 745
BstMWI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
BstPI GGTNACC 1 cut(s) 43
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 358, 554, 685, 884
BstV2I GAAGAC 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 510, 1005
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 74, 129
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 5 cut(s) 38, 83, 226, 586, 708
Cac8I GCNNGC 2 cut(s) 69, 391
CciI TCATGA 2 cut(s) 186, 285
CseI GACGC 1 cut(s) 147
Csp6I GTAC 4 cut(s) 88, 133, 358, 883
CviAII CATG 9 cut(s) 49, 113, 187, 286, 394, 661, 669, 695, 863
CviQI GTAC 4 cut(s) 88, 133, 358, 883
DdeI CTNAG 3 cut(s) 105, 378, 971
DpnI GATC 5 cut(s) 518, 552, 667, 707, 747
DpnII GATC 5 cut(s) 516, 550, 665, 705, 745
DraI TTTAAA 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 915
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 2 cut(s) 281, 925
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
FaqI GGGAC 2 cut(s) 710, 862
FatI CATG 9 cut(s) 48, 112, 186, 285, 393, 660, 668, 694, 862
FauI CCCGC 3 cut(s) 431, 528, 839
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 5 cut(s) 72, 372, 568, 699, 873
FokI GGATG 2 cut(s) 61, 136
Fsp4HI GCNGC 5 cut(s) 72, 372, 568, 699, 873
FspBI CTAG 2 cut(s) 390, 627
GluI GCNGC 5 cut(s) 72, 372, 568, 699, 873
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 2 cut(s) 510, 1005
HapII CCGG 1 cut(s) 837
HgaI GACGC 1 cut(s) 147
Hin1II CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 2 cut(s) 93, 364
HinfI GANTC 1 cut(s) 621
HpaII CCGG 1 cut(s) 837
HphI GGTGA 5 cut(s) 37, 851, 911, 947, 959
Hpy166II GTNNAC 2 cut(s) 145, 544
Hpy188I TCNGA 2 cut(s) 265, 529
Hpy188III TCNNGA 2 cut(s) 187, 286
Hpy8I GTNNAC 2 cut(s) 145, 544
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 5 cut(s) 218, 479, 738, 890, 986
HpyCH4III ACNGT 7 cut(s) 87, 221, 469, 481, 548, 575, 821
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 4 cut(s) 158, 374, 593, 872
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
HpyF3I CTNAG 3 cut(s) 105, 378, 971
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
KpnI GGTACC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 5 cut(s) 516, 550, 665, 705, 745
LmnI GCTCC 2 cut(s) 406, 413
Lsp1109I GCAGC 4 cut(s) 358, 554, 685, 884
LweI GCATC 4 cut(s) 83, 258, 781, 973
MaeI CTAG 2 cut(s) 390, 627
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 6 cut(s) 31, 43, 418, 671, 689, 899
MalI GATC 5 cut(s) 518, 552, 667, 707, 747
MboI GATC 5 cut(s) 516, 550, 665, 705, 745
MboII GAAGA 6 cut(s) 175, 202, 290, 644, 752, 934
MfeI CAATTG 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 7 cut(s) 200, 257, 281, 512, 637, 925, 966
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 4 cut(s) 373, 396, 611, 866
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 595
MscI TGGCCA 1 cut(s) 510
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 1 cut(s) 837
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
NcoI CCATGG 1 cut(s) 48
NdeII GATC 5 cut(s) 516, 550, 665, 705, 745
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
NlaIV GGNNCC 2 cut(s) 359, 384
NmuCI GTSAC 4 cut(s) 43, 671, 689, 899
NsiI ATGCAT 1 cut(s) 595
PagI TCATGA 2 cut(s) 186, 285
PctI GAATGC 1 cut(s) 595
PfeI GAWTC 1 cut(s) 621
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 5 cut(s) 73, 373, 569, 700, 874
Psp1406I AACGTT 1 cut(s) 978
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 359, 384
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
RsaI GTAC 4 cut(s) 89, 134, 359, 884
RsaNI GTAC 4 cut(s) 88, 133, 358, 883
RseI CAYNNNNRTG 1 cut(s) 659
SalI GTCGAC 1 cut(s) 542
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 5 cut(s) 72, 372, 568, 699, 873
Sau3AI GATC 5 cut(s) 516, 550, 665, 705, 745
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 4 cut(s) 83, 258, 781, 973
SmiI ATTTAAAT 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 322, 752
SmoI CTYRAG 2 cut(s) 322, 752
Sse9I AATT 7 cut(s) 200, 257, 281, 512, 637, 925, 966
SsiI CCGC 4 cut(s) 72, 424, 521, 846
SspMI CTAG 2 cut(s) 390, 627
StyI CCWWGG 1 cut(s) 48
SwaI ATTTAAAT 1 cut(s) 598
TaaI ACNGT 7 cut(s) 87, 221, 469, 481, 548, 575, 821
TaiI ACGT 1 cut(s) 981
TaqI TCGA 2 cut(s) 198, 543
TasI AATT 7 cut(s) 200, 257, 281, 512, 637, 925, 966
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 5 cut(s) 45, 90, 226, 586, 715
TseFI GTSAC 4 cut(s) 43, 671, 689, 899
TseI GCWGC 4 cut(s) 371, 567, 698, 872
Tsp45I GTSAC 4 cut(s) 43, 671, 689, 899
TspDTI ATGAA 6 cut(s) 175, 203, 274, 291, 732, 977
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 5 cut(s) 45, 90, 226, 586, 715
Van91I CCANNNNNTGG 1 cut(s) 367
XapI RAATTY 5 cut(s) 200, 257, 281, 925, 966
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 503
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 2 cut(s) 390, 627
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.