Rroxscaffold_1G00065850

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000341
Physical Location & Seq
Forward (+)
87418386 .. 87419897
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065850.1

Sequence Viewer

Length: 1014 bp
ATGTTGATGGAATTGACTCCATACGATGAGCGGGATGTGGCCTGCGATATTGCCATAGTACCCAACAAACTGAGGGATAATATGGCAATAAGCACAAGGTTTCCTTCTAAAGCCATTGAAATTCACCAAGAACTGATCACGAGAGGTATTATATTGATTGGAAAACGTTTTGCCATATTTCGGACAAACTTGGAGTATGTGGAGAAATTCAACAAACAAGAGAACAAGACTTACGACTTAGGCCTGAATCAATTTTCTGATATGACAAATGAAGAATTCCTCCGACATCATACTGGATACAAAAGAATGACCACCACCTCAACGTCTTTTAGATACCAAAACCTGTCCGATGGTGATGTCCCCAATAGCATTGACTGGAGGAAACAAGGAGCTGTCACCCCTGTAAAGAATCAAGCAGACTGTGGTTGTTGTTGGGCTTTCTCAGCAGTGGCTGCTGTGGAAGGGATTACCAAAATAAGAACTGGCAAATTGGTCTCGCTATCTGAGCAACAACTTGTGGACTGTAACAGAGATACGTACAACGCTGGTTGCGAAGGTGGTAACATGGTAGATGCCTTCCAGTACATCCAACAAAATGGTGGAATCACTTGCGAAGATAATTACCGATACACGGCCAAGGACGGAACATGTGATAATAATAAGGAAAAACAATATGCTGCCACAATAACTGGTTTTGAACAAGTGCCTCTAGGGGAAATGAATCTGCTTAAGGCTGTGTCTAGGCAACCTGTCTCAGTCGGCATTTCGCTCGAGGGACAAGACTTTCAGCACTACCGAAGTGGGGTTTTCTCCGGTGATTGTGGACTAAACCTTGGACATGCTGTTACAGCTGTCGGGTACGGGACAACTAAAGAGGGCACCAAGTATTGGTTAATCAAAAACTCATGGGGCGATAATTGGGCTGAAAATGGCTATTTCAGAATTCTTAGAGATAATGGTCGGCTGGAAGGTGAATGCGGCATTGCTAAGGGCGGGGCTTATTCAACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

337

Amino Acids

37.62

Weight (kDa)

5.83

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 55 - 93 4.2e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 120 - 334 2.1e-77 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 978, 993
AclI AACGTT 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 4 cut(s) 120, 206, 275, 942
AfaI GTAC 4 cut(s) 60, 539, 584, 860
AfiI CCNNNNNNNGG 4 cut(s) 180, 631, 802, 888
AflII CTTAAG 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 4 cut(s) 119, 211, 698, 1005
AluBI AGCT 2 cut(s) 392, 851
AluI AGCT 2 cut(s) 392, 851
Alw26I GTCTC 2 cut(s) 499, 757
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 3 cut(s) 39, 241, 633
ApeKI GCWGC 2 cut(s) 452, 677
ApoI RAATTY 4 cut(s) 120, 206, 275, 942
AsuHPI GGTGA 5 cut(s) 116, 365, 388, 827, 983
AvaI CYCGRG 1 cut(s) 770
BaeGI GKGCMC 1 cut(s) 881
BanI GGYRCC 1 cut(s) 878
BauI CACGAG 1 cut(s) 139
BbvI GCAGC 2 cut(s) 439, 664
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 648
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciVI GTATCC 1 cut(s) 290
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 499, 757
BfaI CTAG 2 cut(s) 710, 741
BfrI CTTAAG 1 cut(s) 728
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 3 cut(s) 453, 678, 979
BlsI GCNGC 3 cut(s) 454, 679, 980
BmeT110I CYCGRG 1 cut(s) 770
BmiI GGNNCC 1 cut(s) 880
BmsI GCATC 1 cut(s) 562
BpmI CTGGAG 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 987
BsaAI YACGTR 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 2 cut(s) 636, 832
BsaWI WCCGGW 1 cut(s) 812
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 631, 802, 888
Bse1I ACTGG 5 cut(s) 298, 380, 487, 580, 694
Bse3DI GCAATG 1 cut(s) 981
BseDI CCNNGG 2 cut(s) 636, 832
BseGI GGATG 2 cut(s) 40, 585
BseLI CCNNNNNNNGG 4 cut(s) 180, 631, 802, 888
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 4 cut(s) 62, 456, 495, 768
BseNI ACTGG 5 cut(s) 298, 380, 487, 580, 694
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 2 cut(s) 439, 664
BshFI GGCC 3 cut(s) 41, 243, 635
BshNI GGYRCC 1 cut(s) 878
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 1 cut(s) 813
BslFI GGGAC 3 cut(s) 344, 789, 877
BslI CCNNNNNNNGG 4 cut(s) 180, 631, 802, 888
BsmAI GTCTC 2 cut(s) 499, 757
BsmFI GGGAC 3 cut(s) 344, 789, 877
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 3 cut(s) 41, 243, 635
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 3 cut(s) 31, 978, 993
BspANI GGCC 3 cut(s) 41, 243, 635
BspCNI CTCAG 4 cut(s) 63, 455, 496, 767
BspLI GGNNCC 1 cut(s) 880
BspT107I GGYRCC 1 cut(s) 878
BspTI CTTAAG 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 5 cut(s) 298, 380, 487, 580, 694
BssECI CCNNGG 2 cut(s) 636, 832
BssMI GATC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 636, 832
Bst2BI CACGAG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 422, 524
BstAFI CTTAAG 1 cut(s) 728
BstAPI GCANNNNNTGC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 7 cut(s) 71, 238, 442, 504, 754, 947, 987
BstF5I GGATG 2 cut(s) 40, 585
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 499, 757
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 4 cut(s) 443, 452, 505, 848
BstNSI RCATGY 2 cut(s) 651, 842
BstSLI GKGCMC 1 cut(s) 881
BstSNI TACGTA 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 439, 664
BstXI CCANNNNNNTGG 1 cut(s) 596
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 3 cut(s) 41, 243, 635
BtsCI GGATG 2 cut(s) 40, 585
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 452
Csp6I GTAC 4 cut(s) 59, 538, 583, 859
CviAII CATG 4 cut(s) 565, 648, 839, 906
CviQI GTAC 4 cut(s) 59, 538, 583, 859
DdeI CTNAG 7 cut(s) 71, 238, 442, 504, 754, 947, 987
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 633
Eco105I TACGTA 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 636, 832
Eco147I AGGCCT 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 770
EcoRI GAATTC 2 cut(s) 275, 942
EcoT14I CCWWGG 2 cut(s) 636, 832
ErhI CCWWGG 2 cut(s) 636, 832
FaeI CATG 4 cut(s) 568, 651, 842, 909
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 3 cut(s) 344, 789, 877
FatI CATG 4 cut(s) 564, 647, 838, 905
FauI CCCGC 2 cut(s) 24, 986
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 453, 678, 979
FokI GGATG 2 cut(s) 47, 572
Fsp4HI GCNGC 3 cut(s) 453, 678, 979
FspBI CTAG 2 cut(s) 710, 741
GluI GCNGC 3 cut(s) 453, 678, 979
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 3 cut(s) 41, 243, 635
HapII CCGG 1 cut(s) 813
Hin1II CATG 4 cut(s) 568, 651, 842, 909
HinfI GANTC 5 cut(s) 16, 247, 409, 603, 721
HpaII CCGG 1 cut(s) 813
HphI GGTGA 5 cut(s) 116, 365, 388, 827, 983
Hpy166II GTNNAC 2 cut(s) 520, 824
Hpy188I TCNGA 6 cut(s) 183, 259, 284, 349, 505, 941
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 520, 824
HpyAV CCTTC 5 cut(s) 114, 455, 548, 586, 962
HpyCH4III ACNGT 2 cut(s) 422, 524
HpyCH4IV ACGT 3 cut(s) 166, 323, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 452, 505, 848
HpyF3I CTNAG 7 cut(s) 71, 238, 442, 504, 754, 947, 987
HpySE526I ACGT 3 cut(s) 166, 323, 536
Hsp92II CATG 4 cut(s) 568, 651, 842, 909
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 2 cut(s) 439, 664
LweI GCATC 1 cut(s) 562
MaeI CTAG 2 cut(s) 710, 741
MaeII ACGT 3 cut(s) 166, 323, 536
MaeIII GTNAC 4 cut(s) 394, 524, 560, 844
MalI GATC 1 cut(s) 137
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 284, 626
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 9 cut(s) 11, 120, 206, 251, 275, 488, 619, 916, 942
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 2 cut(s) 307, 613
MnlI CCTC 8 cut(s) 66, 137, 290, 328, 372, 717, 766, 868
MseI TTAA 3 cut(s) 729, 893, 1012
MspA1I CMGCKG 1 cut(s) 851
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 980
MwoI GCNNNNNNNGC 4 cut(s) 443, 452, 505, 848
NdeII GATC 1 cut(s) 135
NlaIII CATG 4 cut(s) 568, 651, 842, 909
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 2 cut(s) 651, 842
PaeR7I CTCGAG 1 cut(s) 770
PceI AGGCCT 1 cut(s) 243
PciI ACATGT 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PctI GAATGC 1 cut(s) 980
PfeI GAWTC 4 cut(s) 247, 409, 603, 721
PflMI CCANNNNNTGG 1 cut(s) 888
PkrI GCNGC 3 cut(s) 454, 679, 980
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 537
PscI ACATGT 1 cut(s) 647
Psp1406I AACGTT 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 880
PspXI VCTCGAGB 1 cut(s) 770
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PstNI CAGNNNCTG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 4 cut(s) 60, 539, 584, 860
RsaNI GTAC 4 cut(s) 59, 538, 583, 859
SaqAI TTAA 3 cut(s) 729, 893, 1012
SatI GCNGC 3 cut(s) 453, 678, 979
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 881
SfaNI GCATC 1 cut(s) 562
Sfr274I CTCGAG 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 728, 770
SmoI CTYRAG 2 cut(s) 728, 770
SnaBI TACGTA 1 cut(s) 537
Sse9I AATT 9 cut(s) 11, 120, 206, 251, 275, 488, 619, 916, 942
SseBI AGGCCT 1 cut(s) 243
SsiI CCGC 3 cut(s) 31, 978, 993
SspMI CTAG 2 cut(s) 710, 741
StuI AGGCCT 1 cut(s) 243
StyI CCWWGG 2 cut(s) 636, 832
TaaI ACNGT 2 cut(s) 422, 524
TaiI ACGT 3 cut(s) 169, 326, 539
TaqI TCGA 1 cut(s) 771
TasI AATT 9 cut(s) 11, 120, 206, 251, 275, 488, 619, 916, 942
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 4 cut(s) 247, 409, 603, 721
Tru1I TTAA 3 cut(s) 729, 893, 1012
Tru9I TTAA 3 cut(s) 729, 893, 1012
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 2 cut(s) 452, 677
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 285, 734
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 888
Vha464I CTTAAG 1 cut(s) 728
XapI RAATTY 4 cut(s) 120, 206, 275, 942
XceI RCATGY 2 cut(s) 651, 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XhoI CTCGAG 1 cut(s) 770
XspI CTAG 2 cut(s) 710, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.