RLG00000033587

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000341
Physical Location & Seq
Reverse (-)
29322176 .. 29323936
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033587

Sequence Viewer

Length: 1032 bp
ATGGCTTTTCAACGCATTAATCTTGTGTTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCTCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCACTGGATGGCAAAGCACGGACGCGTTTACCCCAATGCGGCAGAGAAGGAAATGCGTTTCGACAACTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGCGAATAAGACTTACAAGTTGAACATCAACAGGTTTGCTGATATGACCAACGAGGAATTCCGGAGATATCATACCGGATTCAAAATGCCCCCCGGCTTAAATTCAACGTCATCCAATTTTAGCTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCGTGGACTGGAGGGAACAACGAGCTGTAACTTCCATAAAAAATCAAAATTCATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCCGAGCAGCAACTTGTGGACTGCGATCATCAGAATAATGGGTGCAACGGTGGTAACTTAGTATACGCCTATTCCTACGTAGTACAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGCAAAGAGACATGGGAACATGCGATACTACCAGGGAAAGTGAGCATGCGGCCCAGATCACTGGCTATGAACGCGTCCCTTCCATGAGTGAAAGCGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGGTTGGCATTACTGCTAATGGACAAGATTTTCAGATGTACGGCAGTGGGGTGTATAATTCCGGCAATTGTGGGACGGAGCTCAACCACGCCGTCACGGCCATTGGCTACGGGACGACTGAAGATGGAACCCCCTATTGGTTAATTAAGAACTCATGGGGGGAGAGTTGGGGTGAAAGTGGGTATATGAGGATTCTTAGAAACAGTGATGCCCCAGAGGGTATGTGCGGCCTTGCTATCGATCCCGTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

344

Amino Acids

38.16

Weight (kDa)

5.55

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 2.6e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 125 - 342 6.2e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 579
AccII CGCG 2 cut(s) 141, 714
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 4 cut(s) 155, 438, 689, 996
AclWI GGATC 1 cut(s) 1004
AcoI YGGCCR 3 cut(s) 499, 753, 867
AcsI RAATTY 3 cut(s) 281, 325, 430
AcuI CTGAAG 2 cut(s) 169, 909
AfaI GTAC 3 cut(s) 600, 638, 809
AfiI CCNNNNNNNGG 3 cut(s) 154, 358, 906
AflIII ACRYGT 2 cut(s) 139, 712
AgsI TTSAA 5 cut(s) 11, 217, 247, 307, 330
AjnI CCWGG 1 cut(s) 671
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 889, 921
AluBI AGCT 6 cut(s) 95, 348, 357, 407, 470, 850
AluI AGCT 6 cut(s) 95, 348, 357, 407, 470, 850
Alw21I GWGCWC 2 cut(s) 120, 852
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 1 cut(s) 1004
AlwNI CAGNNNCTG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 5 cut(s) 499, 690, 753, 867, 997
ApeKI GCWGC 4 cut(s) 362, 464, 467, 523
ApoI RAATTY 3 cut(s) 281, 325, 430
AseI ATTAAT 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 691
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 953
BalI TGGCCA 1 cut(s) 755
BanII GRGCYC 1 cut(s) 852
BauI CACGAG 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 120, 852
BbvI GCAGC 4 cut(s) 349, 476, 479, 535
BccI CCATC 2 cut(s) 118, 887
BceAI ACGGC 3 cut(s) 826, 845, 882
BciT130I CCWGG 1 cut(s) 673
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 740
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 7 cut(s) 156, 363, 465, 468, 524, 690, 997
BlsI GCNGC 7 cut(s) 157, 364, 466, 469, 525, 691, 998
Bme1390I CCNGG 2 cut(s) 318, 673
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 1 cut(s) 898
BmrFI CCNGG 2 cut(s) 318, 673
BmsI GCATC 1 cut(s) 967
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 1008
BsaAI YACGTR 2 cut(s) 205, 595
BsaJI CCNNGG 3 cut(s) 48, 316, 672
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 358, 906
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 4 cut(s) 125, 395, 706, 764
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 673
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 3 cut(s) 48, 316, 672
BseGI GGATG 2 cut(s) 129, 335
BseLI CCNNNNNNNGG 3 cut(s) 154, 358, 906
BseNI ACTGG 4 cut(s) 125, 395, 706, 764
BseXI GCAGC 4 cut(s) 349, 476, 479, 535
BseYI CCCAGC 1 cut(s) 447
Bsh1236I CGCG 2 cut(s) 141, 714
BshFI GGCC 5 cut(s) 501, 692, 755, 869, 999
BshVI ATCGAT 1 cut(s) 1008
BsiHKAI GWGCWC 2 cut(s) 120, 852
BsiSI CCGG 5 cut(s) 286, 300, 318, 498, 831
BslFI GGGAC 4 cut(s) 67, 701, 856, 895
BslI CCNNNNNNNGG 3 cut(s) 154, 358, 906
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 4 cut(s) 67, 701, 856, 895
BsnI GGCC 5 cut(s) 501, 692, 755, 869, 999
Bsp1286I GDGCHC 2 cut(s) 120, 852
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 5 cut(s) 507, 541, 696, 736, 1009
BspACI CCGC 4 cut(s) 155, 438, 689, 996
BspANI GGCC 5 cut(s) 501, 692, 755, 869, 999
BspDI ATCGAT 1 cut(s) 1008
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 141, 714
BspLI GGNNCC 1 cut(s) 898
BspPI GGATC 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 4 cut(s) 125, 395, 706, 764
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 48, 316, 672
BssMI GATC 5 cut(s) 507, 541, 696, 736, 1009
BssNAI GTATAC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 3 cut(s) 460, 566, 974
BstBAI YACGTR 2 cut(s) 205, 595
BstC8I GCNNGC 2 cut(s) 445, 687
BstDEI CTNAG 2 cut(s) 574, 965
BstF5I GGATG 2 cut(s) 129, 335
BstFNI CGCG 2 cut(s) 141, 714
BstKTI GATC 5 cut(s) 510, 544, 699, 739, 1012
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 5 cut(s) 507, 541, 696, 736, 1009
BstMWI GCNNNNNNNGC 7 cut(s) 68, 101, 354, 444, 449, 711, 866
BstNI CCWGG 1 cut(s) 673
BstNSI RCATGY 2 cut(s) 663, 689
BstSCI CCNGG 2 cut(s) 316, 671
BstSFI CTRYAG 1 cut(s) 740
BstSNI TACGTA 1 cut(s) 595
BstUI CGCG 2 cut(s) 141, 714
BstV1I GCAGC 4 cut(s) 349, 476, 479, 535
BstXI CCANNNNNNTGG 1 cut(s) 701
BstZ17I GTATAC 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 1008
BsuRI GGCC 5 cut(s) 501, 692, 755, 869, 999
BsuTUI ATCGAT 1 cut(s) 1008
BtsCI GGATG 2 cut(s) 129, 335
BtsI GCAGTG 1 cut(s) 820
BtsIMutI CAGTG 4 cut(s) 118, 699, 820, 979
Cac8I GCNNGC 2 cut(s) 445, 687
CaiI CAGNNNCTG 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 691
ClaI ATCGAT 1 cut(s) 1008
CseI GACGC 2 cut(s) 147, 703
Csp6I GTAC 3 cut(s) 599, 637, 808
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 9 cut(s) 68, 113, 435, 652, 660, 686, 724, 757, 924
CviQI GTAC 3 cut(s) 599, 637, 808
DdeI CTNAG 2 cut(s) 574, 965
DpnI GATC 5 cut(s) 509, 543, 698, 738, 1011
DpnII GATC 5 cut(s) 507, 541, 696, 736, 1009
EaeI YGGCCR 3 cut(s) 499, 753, 867
Ecl136II GAGCTC 1 cut(s) 850
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 852
Eco32I GATATC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 2 cut(s) 169, 909
EcoICRI GAGCTC 1 cut(s) 850
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 671
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 9 cut(s) 71, 116, 438, 655, 663, 689, 727, 760, 927
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 4 cut(s) 67, 701, 856, 895
FatI CATG 9 cut(s) 67, 112, 434, 651, 659, 685, 723, 756, 923
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 7 cut(s) 156, 363, 465, 468, 524, 690, 997
FokI GGATG 2 cut(s) 136, 322
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 7 cut(s) 156, 363, 465, 468, 524, 690, 997
FspBI CTAG 1 cut(s) 381
GluI GCNGC 7 cut(s) 156, 363, 465, 468, 524, 690, 997
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 5 cut(s) 501, 692, 755, 869, 999
HapII CCGG 5 cut(s) 286, 300, 318, 498, 831
HgaI GACGC 2 cut(s) 147, 703
Hin1II CATG 9 cut(s) 71, 116, 438, 655, 663, 689, 727, 760, 927
HindIII AAGCTT 2 cut(s) 93, 355
HinfI GANTC 3 cut(s) 303, 612, 961
HpaII CCGG 5 cut(s) 286, 300, 318, 498, 831
HphI GGTGA 1 cut(s) 953
Hpy166II GTNNAC 4 cut(s) 145, 388, 535, 580
Hpy188I TCNGA 4 cut(s) 520, 549, 804, 1023
Hpy188III TCNNGA 3 cut(s) 187, 286, 620
Hpy8I GTNNAC 4 cut(s) 145, 388, 535, 580
HpyAV CCTTC 4 cut(s) 157, 470, 729, 739
HpyCH4III ACNGT 3 cut(s) 460, 566, 974
HpyCH4IV ACGT 3 cut(s) 204, 332, 594
HpyCH4V TGCA 3 cut(s) 561, 760, 1028
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 101, 354, 444, 449, 711, 866
HpyF3I CTNAG 2 cut(s) 574, 965
HpySE526I ACGT 3 cut(s) 204, 332, 594
Hsp92II CATG 9 cut(s) 71, 116, 438, 655, 663, 689, 727, 760, 927
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 5 cut(s) 507, 541, 696, 736, 1009
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 4 cut(s) 349, 476, 479, 535
LweI GCATC 1 cut(s) 967
MaeI CTAG 1 cut(s) 381
MaeII ACGT 3 cut(s) 204, 332, 594
MaeIII GTNAC 3 cut(s) 409, 569, 862
MalI GATC 5 cut(s) 509, 543, 698, 738, 1011
MboI GATC 5 cut(s) 507, 541, 696, 736, 1009
MboII GAAGA 3 cut(s) 202, 635, 902
MfeI CAATTG 2 cut(s) 503, 835
MhlI GDGCHC 2 cut(s) 120, 852
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 8 cut(s) 281, 325, 340, 430, 503, 826, 835, 912
MluI ACGCGT 2 cut(s) 139, 712
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 5 cut(s) 271, 387, 602, 951, 979
Mox20I TGGCCA 1 cut(s) 755
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 18, 323, 911, 915
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 5 cut(s) 286, 300, 318, 498, 831
MspR9I CCNGG 2 cut(s) 318, 673
MunI CAATTG 2 cut(s) 503, 835
MvaI CCWGG 1 cut(s) 673
MvnI CGCG 2 cut(s) 141, 714
MwoI GCNNNNNNNGC 7 cut(s) 68, 101, 354, 444, 449, 711, 866
NciI CCSGG 1 cut(s) 318
NdeII GATC 5 cut(s) 507, 541, 696, 736, 1009
NlaIII CATG 9 cut(s) 71, 116, 438, 655, 663, 689, 727, 760, 927
NlaIV GGNNCC 1 cut(s) 898
NmuCI GTSAC 1 cut(s) 862
NspI RCATGY 2 cut(s) 663, 689
PacI TTAATTAA 1 cut(s) 915
PaeI GCATGC 1 cut(s) 689
PfeI GAWTC 2 cut(s) 303, 961
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 7 cut(s) 157, 364, 466, 469, 525, 691, 998
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
Ppu21I YACGTR 2 cut(s) 205, 595
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 671
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 1 cut(s) 898
PspPI GGNCC 1 cut(s) 691
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 600, 638, 809
RsaNI GTAC 3 cut(s) 599, 637, 808
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 4 cut(s) 18, 323, 911, 915
SatI GCNGC 7 cut(s) 156, 363, 465, 468, 524, 690, 997
Sau3AI GATC 5 cut(s) 507, 541, 696, 736, 1009
Sau96I GGNCC 1 cut(s) 691
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 318, 673
SduI GDGCHC 2 cut(s) 120, 852
SfaNI GCATC 1 cut(s) 967
SfcI CTRYAG 1 cut(s) 740
SnaBI TACGTA 1 cut(s) 595
SphI GCATGC 1 cut(s) 689
Sse9I AATT 8 cut(s) 281, 325, 340, 430, 503, 826, 835, 912
SsiI CCGC 4 cut(s) 155, 438, 689, 996
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 852
StyD4I CCNGG 2 cut(s) 316, 671
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 460, 566, 974
TaiI ACGT 3 cut(s) 207, 335, 597
TaqI TCGA 3 cut(s) 177, 198, 1008
TasI AATT 8 cut(s) 281, 325, 340, 430, 503, 826, 835, 912
TatI WGTACW 1 cut(s) 598
TauI GCSGC 3 cut(s) 158, 692, 999
TfiI GAWTC 2 cut(s) 303, 961
Tru1I TTAA 4 cut(s) 18, 323, 911, 915
Tru9I TTAA 4 cut(s) 18, 323, 911, 915
TscAI CASTG 4 cut(s) 125, 706, 820, 979
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 4 cut(s) 362, 464, 467, 523
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 6 cut(s) 31, 72, 105, 237, 423, 723
TspGWI ACGGA 3 cut(s) 150, 621, 860
TspRI CASTG 4 cut(s) 125, 706, 820, 979
Van91I CCANNNNNTGG 1 cut(s) 358
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 3 cut(s) 281, 325, 430
XceI RCATGY 2 cut(s) 663, 689
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.