FvH4_3g07970

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000341
Physical Location & Seq
Forward (+)
4697386 .. 4698867
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07970.t1

Sequence Viewer

Length: 1038 bp
ATGAATTTCAAAAGAAATCATGTGATCCTTGCCATATTCATCTCGTTTGGTACTTTGGCTTCTCAAGCCACAACCCATGCATTGTACGAAGCTTCCATTGCTCAGAAACATGAGCAATGGATGGCAAAGCACGGACGTGTTTACCCCGACAGTTCAGAGAAGGAAAGGCGGCTCGCTATCTTCACGAAGAATGTCGAATTCGTGGAGAAGTTCAACAAAGAAGGGAACAAGACTTACAAGTTGAGCATCAATAAGTTTTCTGATATGACCAATGAAGAATTCATGAGACATCATACCGGATACAAAGTGCCAACCAGCTCAAGTACTTCAACCTCATTCGAAAATAACTCTTTTCAATACCAAAGCTTGGCTGATACTGATATTCCAACTAGCATGGATTGGAGAGAACAAGCCGCCGTCACCGGCATAAAAGATCAAGGTCGATGTGGTGCTTGCTGGGCATTTACAGTAGTAGCAGCTGTGGAAGGGCTAACCAAAATTAAAACTGGCCAATTGATCTCACTCTCTGAGCAGCAACTTGTGGATTGCAGTCATCAGAACGGTGGTTGCAGAGGTGGTAGCTTAGAAAGCGCATACGAGTATGTTATACAAAACGGAGGAATTGCTCGTGAAGAAAATTATCAATACCAGAGCACGGACATGGAAACATGTGACACGAACAAAGAAAGTGAGCATGCTGCACAGATCTCTGCTTATGAAAAAGTCCCTTCCAGAAGTGAGAACGATCTACTCAAGGCTGTGTACATGCAACCAGTGTCGATTAGCATTGCTGCTTATGGACCAGATTTTCAGCATTACAGCAGTGGTGTGTTTTCCAGCGATTGTGGAACGCACCTTGACCATGCCGTCACCGCCATTGGATACGGGACGACTGAAGATGGAATCCCCTATTGGTTATTGAAGAACTCATGGGGTGAGCAGTGGGGTGAAAGTGGATATATGAGAATTCTAAGAAACAGTGATGCCCCAGAAGGTATGTGCGGCCTTGCTATGAATGCTTTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

346

Amino Acids

38.49

Weight (kDa)

5.49

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 94 3.6e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 128 - 344 4.3e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 866
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 4 cut(s) 169, 414, 873, 1002
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 4 cut(s) 4, 197, 278, 966
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 4 cut(s) 52, 86, 325, 764
AfiI CCNNNNNNNGG 2 cut(s) 367, 655
AflIII ACRYGT 2 cut(s) 136, 668
AgsI TTSAA 5 cut(s) 10, 214, 330, 356, 922
AjiI CACGTC 1 cut(s) 137
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 895, 927
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 5 cut(s) 92, 318, 366, 479, 582
AluI AGCT 5 cut(s) 92, 318, 366, 479, 582
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 19
AoxI GGCC 2 cut(s) 508, 1003
ApeKI GCWGC 4 cut(s) 476, 532, 698, 791
ApoI RAATTY 4 cut(s) 4, 197, 278, 966
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 800
AsuHPI GGTGA 4 cut(s) 412, 862, 947, 959
AsuII TTCGAA 1 cut(s) 339
AvaII GGWCC 1 cut(s) 800
BalI TGGCCA 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
BauI CACGAG 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 4 cut(s) 488, 544, 685, 778
BccI CCATC 2 cut(s) 115, 893
BceAI ACGGC 2 cut(s) 401, 851
BciVI GTATCC 2 cut(s) 293, 875
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 2 cut(s) 293, 875
BglII AGATCT 1 cut(s) 705
BisI GCNGC 7 cut(s) 170, 414, 477, 533, 699, 792, 1003
BlsI GCNGC 7 cut(s) 171, 415, 478, 534, 700, 793, 1004
BmcAI AGTACT 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 800
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 800
BmsI GCATC 2 cut(s) 255, 973
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 3 cut(s) 48, 304, 737
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 655
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 511, 773
Bse3DI GCAATG 3 cut(s) 96, 122, 786
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 367, 655
BseMI GCAATG 3 cut(s) 96, 122, 786
BseMII CTCAG 2 cut(s) 116, 519
BseNI ACTGG 2 cut(s) 511, 773
BseXI GCAGC 4 cut(s) 488, 544, 685, 778
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 2 cut(s) 510, 1005
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 2 cut(s) 297, 423
BslFI GGGAC 2 cut(s) 710, 901
BslI CCNNNNNNNGG 2 cut(s) 367, 655
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 710, 901
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 2 cut(s) 510, 1005
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 762
Bsp143I GATC 5 cut(s) 24, 433, 516, 705, 745
BspACI CCGC 4 cut(s) 169, 414, 873, 1002
BspANI GGCC 2 cut(s) 510, 1005
BspCNI CTCAG 2 cut(s) 115, 520
BspHI TCATGA 1 cut(s) 282
BspPI GGATC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 339
BsrDI GCAATG 3 cut(s) 96, 122, 786
BsrFI RCCGGY 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 762
BsrI ACTGG 2 cut(s) 511, 773
BssAI RCCGGY 1 cut(s) 422
BssMI GATC 5 cut(s) 24, 433, 516, 705, 745
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst4CI ACNGT 4 cut(s) 152, 469, 563, 980
BstAUI TGTACA 1 cut(s) 762
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 174, 454, 696
BstDEI CTNAG 4 cut(s) 102, 528, 583, 971
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 5 cut(s) 27, 436, 519, 708, 748
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 5 cut(s) 24, 433, 516, 705, 745
BstMWI GCNNNNNNNGC 6 cut(s) 65, 98, 458, 588, 872, 1016
BstNSI RCATGY 3 cut(s) 672, 698, 769
BstV1I GCAGC 4 cut(s) 488, 544, 685, 778
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
BsuI GTATCC 2 cut(s) 293, 875
BsuRI GGCC 2 cut(s) 510, 1005
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 2 cut(s) 829, 947
BtsIMutI CAGTG 4 cut(s) 780, 829, 947, 985
Cac8I GCNNGC 3 cut(s) 174, 454, 696
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 800
Csp6I GTAC 4 cut(s) 51, 85, 324, 763
CviQI GTAC 4 cut(s) 51, 85, 324, 763
DdeI CTNAG 4 cut(s) 102, 528, 583, 971
DpnI GATC 5 cut(s) 26, 435, 518, 707, 747
DpnII GATC 5 cut(s) 24, 433, 516, 705, 745
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
EaeI YGGCCR 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 915
EcoRI GAATTC 3 cut(s) 197, 278, 966
EcoT22I ATGCAT 1 cut(s) 82
FaqI GGGAC 2 cut(s) 710, 901
Fnu4HI GCNGC 7 cut(s) 170, 414, 477, 533, 699, 792, 1003
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 7 cut(s) 170, 414, 477, 533, 699, 792, 1003
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 592
GluI GCNGC 7 cut(s) 170, 414, 477, 533, 699, 792, 1003
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 2 cut(s) 510, 1005
HapII CCGG 2 cut(s) 297, 423
HhaI GCGC 1 cut(s) 593
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HindIII AAGCTT 2 cut(s) 90, 364
HinfI GANTC 1 cut(s) 903
HpaII CCGG 2 cut(s) 297, 423
HphI GGTGA 4 cut(s) 412, 862, 947, 959
Hpy166II GTNNAC 2 cut(s) 142, 763
Hpy188I TCNGA 6 cut(s) 105, 157, 262, 529, 558, 1029
Hpy188III TCNNGA 4 cut(s) 184, 283, 629, 732
Hpy8I GTNNAC 2 cut(s) 142, 763
HpyAV CCTTC 5 cut(s) 154, 215, 479, 738, 986
HpyCH4III ACNGT 4 cut(s) 152, 469, 563, 980
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 6 cut(s) 80, 549, 570, 701, 769, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 98, 458, 588, 872, 1016
HpyF3I CTNAG 4 cut(s) 102, 528, 583, 971
HpySE526I ACGT 1 cut(s) 136
HspAI GCGC 1 cut(s) 591
Kzo9I GATC 5 cut(s) 24, 433, 516, 705, 745
Lsp1109I GCAGC 4 cut(s) 488, 544, 685, 778
LweI GCATC 2 cut(s) 255, 973
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 3 cut(s) 418, 671, 868
MalI GATC 5 cut(s) 26, 435, 518, 707, 747
MboI GATC 5 cut(s) 24, 433, 516, 705, 745
MboII GAAGA 6 cut(s) 172, 199, 287, 644, 908, 934
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 8 cut(s) 4, 197, 278, 498, 512, 621, 637, 966
MluNI TGGCCA 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 3 cut(s) 343, 566, 611
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 1019
MscI TGGCCA 1 cut(s) 510
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 2 cut(s) 135, 659
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 297, 423
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 1021
MwoI GCNNNNNNNGC 6 cut(s) 65, 98, 458, 588, 872, 1016
NdeII GATC 5 cut(s) 24, 433, 516, 705, 745
NmuCI GTSAC 3 cut(s) 418, 671, 868
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 3 cut(s) 672, 698, 769
NspV TTCGAA 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 135
PaeI GCATGC 1 cut(s) 698
PagI TCATGA 1 cut(s) 282
PciI ACATGT 1 cut(s) 668
PctI GAATGC 1 cut(s) 1021
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 1 cut(s) 903
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 7 cut(s) 171, 415, 478, 534, 700, 793, 1004
PscI ACATGT 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 800
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PsuI RGATCY 1 cut(s) 705
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 4 cut(s) 52, 86, 325, 764
RsaNI GTAC 4 cut(s) 51, 85, 324, 763
RseI CAYNNNNRTG 2 cut(s) 135, 659
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 7 cut(s) 170, 414, 477, 533, 699, 792, 1003
Sau3AI GATC 5 cut(s) 24, 433, 516, 705, 745
Sau96I GGNCC 1 cut(s) 800
ScaI AGTACT 1 cut(s) 325
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 2 cut(s) 255, 973
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 2 cut(s) 135, 659
SmlI CTYRAG 3 cut(s) 63, 319, 752
SmoI CTYRAG 3 cut(s) 63, 319, 752
SphI GCATGC 1 cut(s) 698
Sse9I AATT 8 cut(s) 4, 197, 278, 498, 512, 621, 637, 966
SsiI CCGC 4 cut(s) 169, 414, 873, 1002
SspMI CTAG 1 cut(s) 390
TaaI ACNGT 4 cut(s) 152, 469, 563, 980
TaiI ACGT 1 cut(s) 139
TaqI TCGA 4 cut(s) 195, 339, 442, 779
TasI AATT 8 cut(s) 4, 197, 278, 498, 512, 621, 637, 966
TatI WGTACW 2 cut(s) 323, 762
TauI GCSGC 3 cut(s) 172, 416, 1005
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 4 cut(s) 780, 829, 947, 985
TseFI GTSAC 3 cut(s) 418, 671, 868
TseI GCWGC 4 cut(s) 476, 532, 698, 791
Tsp45I GTSAC 3 cut(s) 418, 671, 868
TspDTI ATGAA 6 cut(s) 17, 28, 271, 288, 732, 1028
TspGWI ACGGA 3 cut(s) 147, 630, 671
TspRI CASTG 4 cut(s) 780, 829, 947, 985
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 800
XapI RAATTY 4 cut(s) 4, 197, 278, 966
XceI RCATGY 3 cut(s) 672, 698, 769
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.