FvH4_3g14350

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000341
Physical Location & Seq
Forward (+)
8772378 .. 8774069
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14350.t1

Sequence Viewer

Length: 693 bp
ATGGGTTTTGAGCAAAACCTTGTGATGATTGTCATATTCATCGTCTTGGGAATTCTTGCATCCCAAGCCACATCTCGTGCATCCTACAAAGCTGATTCCATTGCTGACAAACATGAGCAATGGATGGCTAAGCATGGGCGCGTTTACCCAGACAGCAAAGAGAAGGAAAGACGTTTCGAAATATTCAAGAAGACTGTGGAGTTTGTGGAGAAATTCAATAGTGAAGGGAATGCGACATACACGTTAAGCGTCAACAAATTTTCAGATATGACAAATGAAGAATTCCTCAGACATCATGCTGGATTCAAAATGCCTACGACCGTCTCAAGTTCAACAACTTCATCATCTGAAGATCAATTGTCCACTAAACAAAGCGGGCCAAATAATACGACTAGTGATGATATTCCAGCAAGCATCGACTGGAGGGAACATGGGGCTGTCACTCCTATAAAGGATCAAGGCGAATGTGGTGCTTGCTGGGCAATATTTACTGCGGTTGCAGCTGTGGAAGGAATTACAAAAATCAAAACCGGCAAATTGATCTCACTGTCCGCGCAACAACTTGTGGACTGCGACGTGCAAAACAATGGCTGTGTGACGCTAGTGACATTGATGCTGCTTTTGAATACATCCAGCAAAATGGAGGGATCGCCAAAGAAAAAAATTACCCATACCGGGGCAAGGACAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

231

Amino Acids

25.29

Weight (kDa)

7.01

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 1.4e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 135 - 198 3.8e-23 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 141, 554
AciI CCGC 3 cut(s) 375, 494, 552
AclWI GGATC 2 cut(s) 462, 655
AcsI RAATTY 4 cut(s) 51, 212, 257, 281
AcuI CTGAAG 1 cut(s) 369
AfiI CCNNNNNNNGG 3 cut(s) 675, 676, 681
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 5 cut(s) 187, 217, 307, 333, 625
AhlI ACTAGT 1 cut(s) 392
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 2 cut(s) 92, 503
AluI AGCT 2 cut(s) 92, 503
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 2 cut(s) 462, 655
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 500, 616
ApoI RAATTY 4 cut(s) 51, 212, 257, 281
AspLEI GCGC 2 cut(s) 141, 556
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 676
AsuII TTCGAA 1 cut(s) 177
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 512, 603
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 328
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 2 cut(s) 393, 602
BisI GCNGC 2 cut(s) 501, 617
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 2 cut(s) 502, 618
Bme1390I CCNGG 1 cut(s) 676
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 676
BmsI GCATC 4 cut(s) 68, 89, 423, 603
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 675
Bsc4I CCNNNNNNNGG 3 cut(s) 675, 676, 681
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 2 cut(s) 99, 125
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 4 cut(s) 59, 80, 129, 629
BseLI CCNNNNNNNGG 3 cut(s) 675, 676, 681
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 512, 603
BseYI CCCAGC 1 cut(s) 477
Bsh1236I CGCG 2 cut(s) 141, 554
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 531, 675
BslI CCNNNNNNNGG 3 cut(s) 675, 676, 681
BsmAI GTCTC 1 cut(s) 328
BsmBI CGTCTC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 352, 454, 540, 647
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 3 cut(s) 375, 494, 552
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 2 cut(s) 141, 554
BspPI GGATC 2 cut(s) 462, 655
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 99, 125
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 4 cut(s) 352, 454, 540, 647
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 196, 322, 549
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 377, 412, 475
BstDEI CTNAG 2 cut(s) 129, 287
BstF5I GGATG 4 cut(s) 59, 80, 129, 629
BstFNI CGCG 2 cut(s) 141, 554
BstHHI GCGC 2 cut(s) 141, 556
BstKTI GATC 4 cut(s) 355, 457, 543, 650
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 4 cut(s) 352, 454, 540, 647
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 65, 479, 500
BstSCI CCNGG 1 cut(s) 674
BstUI CGCG 2 cut(s) 141, 554
BstV1I GCAGC 2 cut(s) 512, 603
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 640
BsuRI GGCC 1 cut(s) 379
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 4 cut(s) 59, 80, 129, 629
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 3 cut(s) 377, 412, 475
CfoI GCGC 2 cut(s) 141, 556
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 2 cut(s) 238, 607
CviAII CATG 4 cut(s) 113, 134, 296, 431
CviJI RGCY 7 cut(s) 68, 92, 128, 379, 437, 503, 591
CviKI_1 RGCY 7 cut(s) 68, 92, 128, 379, 437, 503, 591
DdeI CTNAG 2 cut(s) 129, 287
DpnI GATC 4 cut(s) 354, 456, 542, 649
DpnII GATC 4 cut(s) 352, 454, 540, 647
Eco57I CTGAAG 1 cut(s) 369
EcoRI GAATTC 2 cut(s) 51, 281
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 4 cut(s) 116, 137, 299, 434
FaiI YATR 9 cut(s) 35, 114, 135, 238, 269, 297, 432, 449, 672
FatI CATG 4 cut(s) 112, 133, 295, 430
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 501, 617
FokI GGATG 4 cut(s) 46, 67, 136, 616
Fsp4HI GCNGC 2 cut(s) 501, 617
FspBI CTAG 2 cut(s) 393, 602
GlaI GCGC 2 cut(s) 140, 555
GluI GCNGC 2 cut(s) 501, 617
GsaI CCCAGC 1 cut(s) 481
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 1 cut(s) 379
HapII CCGG 2 cut(s) 531, 675
HgaI GACGC 2 cut(s) 238, 607
HhaI GCGC 2 cut(s) 141, 556
Hin1II CATG 4 cut(s) 116, 137, 299, 434
Hin6I GCGC 2 cut(s) 139, 554
HinP1I GCGC 2 cut(s) 139, 554
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 95, 303
HpaII CCGG 2 cut(s) 531, 675
Hpy166II GTNNAC 4 cut(s) 145, 253, 363, 568
Hpy188I TCNGA 3 cut(s) 265, 290, 349
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 4 cut(s) 145, 253, 363, 568
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 3 cut(s) 157, 218, 503
HpyCH4III ACNGT 3 cut(s) 196, 322, 549
HpyCH4IV ACGT 4 cut(s) 172, 242, 576, 689
HpyCH4V TGCA 4 cut(s) 59, 80, 500, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 479, 500
HpyF3I CTNAG 2 cut(s) 129, 287
HpySE526I ACGT 4 cut(s) 172, 242, 576, 689
Hsp92II CATG 4 cut(s) 116, 137, 299, 434
HspAI GCGC 2 cut(s) 139, 554
Kzo9I GATC 4 cut(s) 352, 454, 540, 647
LpnPI CCDG 8 cut(s) 162, 285, 406, 420, 463, 544, 646, 688
Lsp1109I GCAGC 2 cut(s) 512, 603
LweI GCATC 4 cut(s) 68, 89, 423, 603
MaeI CTAG 2 cut(s) 393, 602
MaeII ACGT 4 cut(s) 172, 242, 576, 689
MaeIII GTNAC 3 cut(s) 439, 595, 604
MalI GATC 4 cut(s) 354, 456, 542, 649
MboI GATC 4 cut(s) 352, 454, 540, 647
MboII GAAGA 3 cut(s) 202, 290, 362
MfeI CAATTG 1 cut(s) 356
MluCI AATT 8 cut(s) 51, 212, 257, 281, 356, 513, 536, 663
MnlI CCTC 3 cut(s) 296, 417, 637
MseI TTAA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 531, 675
MspR9I CCNGG 1 cut(s) 676
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 235
MvnI CGCG 2 cut(s) 141, 554
MwoI GCNNNNNNNGC 3 cut(s) 65, 479, 500
NciI CCSGG 1 cut(s) 676
NdeII GATC 4 cut(s) 352, 454, 540, 647
NlaIII CATG 4 cut(s) 116, 137, 299, 434
NmuCI GTSAC 3 cut(s) 439, 595, 604
NspV TTCGAA 1 cut(s) 177
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 95, 303
PkrI GCNGC 2 cut(s) 502, 618
PspFI CCCAGC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 503
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 2 cut(s) 501, 617
Sau3AI GATC 4 cut(s) 352, 454, 540, 647
Sau96I GGNCC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 676
SetI ASST 7 cut(s) 21, 94, 175, 245, 505, 579, 692
SfaNI GCATC 4 cut(s) 68, 89, 423, 603
SfuI TTCGAA 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 8 cut(s) 51, 212, 257, 281, 356, 513, 536, 663
SsiI CCGC 3 cut(s) 375, 494, 552
SspI AATATT 2 cut(s) 183, 486
SspMI CTAG 2 cut(s) 393, 602
StyD4I CCNGG 1 cut(s) 674
TaaI ACNGT 3 cut(s) 196, 322, 549
TaiI ACGT 4 cut(s) 175, 245, 579, 692
TaqI TCGA 2 cut(s) 177, 417
TasI AATT 8 cut(s) 51, 212, 257, 281, 356, 513, 536, 663
TfiI GAWTC 2 cut(s) 95, 303
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 3 cut(s) 439, 595, 604
TseI GCWGC 2 cut(s) 500, 616
Tsp45I GTSAC 3 cut(s) 439, 595, 604
TspDTI ATGAA 3 cut(s) 28, 291, 330
TspRI CASTG 1 cut(s) 552
XapI RAATTY 4 cut(s) 51, 212, 257, 281
XspI CTAG 2 cut(s) 393, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.