Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000341

Physical Location & Seq

Genomic Coordinates Reverse (-)

4736196 .. 4737754

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTTAATAAGAGGAGACATTCTAGTTGTCTTGTTCATCCTCAGCCTGCAAGTGCCTTGCACTCGATCAGTATCGCAGGCCACATTGTCCCGCTCATTCAACTACGCCAACATTGTCAAGACGTTCGAGCAATGGACGGCGAAGCGCGGCCGCGTCTACTCCAACGGCCAGGAGAAGAGCCGGCGTTTCGCAATCTTCAGGGCCAACATGGACTACGTCCACAAGTTCAACAAGCATGAGAAGAAAACTTACCAGCTAGGCCTCAATCATTTTTCAGACATTACGGATGAAGAAATCCTCGGACGTCAGCAGACTGGATTCGAAAGAATGGCCACCTCCTCAACCTCGTTCAAGTACCAAAACGAGTCTGACGCCGATAATATCCCCGCCAGCATTGACCGGAGGAAACACAGAGCCGTCACCCCTGTAAAAAACCAAGCGTTGTTGTTGGGCATTTTCAGCCGTGGCAGCTGTGGAGGGGATAATCAAATTACGAACTGGTCAGTTGATGCCATTATCAGAGCAACAGCTTGTGGACTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

183

Amino Acids

20.61

Weight (kDa)

9.75

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	43 - 100	8.1e-18	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27420 AT3G49340
fragaria_vesca	FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica	MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica	Prupe.4G059600_v2.0.a1
pyrus_communis	pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis	RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata	RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora	Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii	Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa	Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha	Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana	Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	150, 156
AciI	CCGC	4 cut(s)	94, 150, 154, 390
AcoI	YGGCCR	3 cut(s)	151, 169, 333
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	307, 375
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	103, 232, 355
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	259, 474, 533
AluI	AGCT	3 cut(s)	259, 474, 533
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	6 cut(s)	81, 151, 169, 204, 262, 333
ApeKI	GCWGC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	415
AsuII	TTCGAA	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	483
BceAI	ACGGC	4 cut(s)	156, 184, 404, 450
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	26, 260
BfmI	CTRYAG	1 cut(s)	542
BisI	GCNGC	3 cut(s)	151, 154, 472
BlsI	GCNGC	3 cut(s)	152, 155, 473
Bme1390I	CCNGG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	73
BsaHI	GRCGYC	2 cut(s)	307, 375
BsaJI	CCNNGG	2 cut(s)	301, 466
BsaWI	WCCGGW	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	322, 506
Bse3DI	GCAATG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	301, 466
BseGI	GGATG	2 cut(s)	39, 295
BseJI	GATNNNNATC	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	2 cut(s)	322, 506
BseRI	GAGGAG	2 cut(s)	30, 331
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	150, 156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	6 cut(s)	83, 153, 171, 206, 264, 335
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	184, 403
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	6 cut(s)	83, 153, 171, 206, 264, 335
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	4 cut(s)	94, 150, 154, 390
BspANI	GGCC	6 cut(s)	83, 153, 171, 206, 264, 335
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	150, 156
BspMAI	CTGCAG	1 cut(s)	546
BspQI	GCTCTTC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	322, 506
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	301, 466
BssMI	GATC	1 cut(s)	68
BssNI	GRCGYC	2 cut(s)	307, 375
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	307, 375
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	50, 81, 185, 394
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	39, 295
BstFNI	CGCG	2 cut(s)	150, 156
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	68
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	462, 471
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	2 cut(s)	150, 156
BstV1I	GCAGC	1 cut(s)	483
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	6 cut(s)	83, 153, 171, 206, 264, 335
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	39, 295
Cac8I	GCNNGC	4 cut(s)	50, 81, 185, 394
CciNI	GCGGCCGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	145, 383
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	211, 239
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	151, 169, 333
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	214, 242
FaiI	YATR	2 cut(s)	212, 240
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	210, 238
FauI	CCCGC	2 cut(s)	101, 397
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	151, 154, 472
FokI	GGATG	2 cut(s)	26, 302
Fsp4HI	GCNGC	3 cut(s)	151, 154, 472
FspBI	CTAG	2 cut(s)	26, 260
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	3 cut(s)	151, 154, 472
HaeIII	GGCC	6 cut(s)	83, 153, 171, 206, 264, 335
HapII	CCGG	2 cut(s)	184, 403
HgaI	GACGC	2 cut(s)	145, 383
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	2 cut(s)	307, 375
Hin1II	CATG	2 cut(s)	214, 242
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	321, 368
HpaII	CCGG	2 cut(s)	184, 403
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	160, 223, 539
Hpy188I	TCNGA	4 cut(s)	280, 305, 373, 524
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	3 cut(s)	160, 223, 539
HpyCH4IV	ACGT	3 cut(s)	125, 219, 307
HpyCH4V	TGCA	3 cut(s)	52, 63, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	462, 471
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	3 cut(s)	125, 219, 307
Hsp92I	GRCGYC	2 cut(s)	307, 375
Hsp92II	CATG	2 cut(s)	214, 242
HspAI	GCGC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	68
LguI	GCTCTTC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	26, 260
MaeII	ACGT	3 cut(s)	125, 219, 307
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	70
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	1 cut(s)	68
MboII	GAAGA	4 cut(s)	190, 190, 256, 305
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	9 cut(s)	8, 53, 275, 311, 349, 352, 358, 399, 473
Mox20I	TGGCCA	1 cut(s)	335
MroNI	GCCGGC	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	2 cut(s)	184, 403
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	150, 156
MwoI	GCNNNNNNNGC	2 cut(s)	462, 471
NaeI	GCCGGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	68
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	2 cut(s)	214, 242
NmuCI	GTSAC	1 cut(s)	421
NotI	GCGGCCGC	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	152, 155, 473
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	546
PsyI	GACNNNGTC	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	151, 154, 472
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	8 cut(s)	128, 222, 261, 310, 341, 350, 476, 535
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	542
SfuI	TTCGAA	1 cut(s)	324
Sse9I	AATT	1 cut(s)	492
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	4 cut(s)	94, 150, 154, 390
SspMI	CTAG	2 cut(s)	26, 260
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	171
TaiI	ACGT	3 cut(s)	128, 222, 310
TaqI	TCGA	3 cut(s)	67, 129, 324
TasI	AATT	1 cut(s)	492
TauI	GCSGC	2 cut(s)	153, 156
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	28, 306
TspGWI	ACGGA	1 cut(s)	302
Tth111I	GACNNNGTC	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	26, 260
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.