Rh5BG461200

cysteine-type peptidase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
73770783 .. 73771127
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG461200.1

Sequence Viewer

Length: 345 bp
ATGGATTTCAAAAGAAACCATGTGATCAGTGCCATATTCATCATCTTAGGGAATTTGGCTTCTCAAGCCACATCCGATGCATTGTACGAATCTTCCATTGCCGAAAAACATGAGCAATGGATGGCAAAGCATGGACGTGTTTACCCCAATGTGGCAGAGAAGGAAAGGCGTTTCGGCATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGGGAATAAGACTTACAAGTTGAACATCAACAGCTTTGCGGATATGACCAACGAAGAATTCCGGAGACATCATACCGGATACAGAACCCCCCCCCGGCTTAAGTTCAACGTCATCCAATTTTAG
Functional Annotation

Protein Analysis

114

Amino Acids

13.5

Weight (kDa)

9.6

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 94 3.2e-21 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 282
AciI CCGC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 52, 278
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 151, 315
AflII CTTAAG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 10, 214, 244, 328
AjiI CACGTC 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 282
ApoI RAATTY 2 cut(s) 52, 278
AsuC2I CCSGG 1 cut(s) 316
BccI CCATC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 280
BfrI CTTAAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 67, 186
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 314
BsaWI WCCGGW 2 cut(s) 282, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 315
Bse3DI GCAATG 2 cut(s) 96, 122
BseAI TCCGGA 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 3 cut(s) 71, 126, 333
BseLI CCNNNNNNNGG 2 cut(s) 151, 315
BseMI GCAATG 2 cut(s) 96, 122
BsiSI CCGG 3 cut(s) 283, 297, 316
BslI CCNNNNNNNGG 2 cut(s) 151, 315
BsmAI GTCTC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 96, 122
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 3 cut(s) 71, 126, 333
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 314
BsuI GTATCC 1 cut(s) 293
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 71, 126, 333
BtsIMutI CAGTG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 20, 110, 131
CviJI RGCY 4 cut(s) 59, 68, 255, 319
CviKI_1 RGCY 4 cut(s) 59, 68, 255, 319
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 3 cut(s) 23, 113, 134
FaiI YATR 6 cut(s) 21, 35, 111, 132, 266, 294
FatI CATG 3 cut(s) 19, 109, 130
FbaI TGATCA 1 cut(s) 24
FokI GGATG 3 cut(s) 58, 133, 320
HapII CCGG 3 cut(s) 283, 297, 316
Hin1II CATG 3 cut(s) 23, 113, 134
HinfI GANTC 1 cut(s) 89
HpaII CCGG 3 cut(s) 283, 297, 316
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 184, 283
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 154, 215
HpyCH4IV ACGT 3 cut(s) 136, 201, 330
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 3 cut(s) 136, 201, 330
Hsp92II CATG 3 cut(s) 23, 113, 134
Kpn2I TCCGGA 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 169, 296, 310, 329
LweI GCATC 2 cut(s) 67, 186
MaeII ACGT 3 cut(s) 136, 201, 330
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 4 cut(s) 84, 172, 199, 287
MluCI AATT 3 cut(s) 52, 278, 338
Mph1103I ATGCAT 1 cut(s) 82
MroI TCCGGA 1 cut(s) 282
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 3 cut(s) 283, 297, 316
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 316
NdeII GATC 1 cut(s) 24
NlaIII CATG 3 cut(s) 23, 113, 134
NsiI ATGCAT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 202
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 316
SetI ASST 4 cut(s) 139, 204, 257, 333
SfaNI GCATC 2 cut(s) 67, 186
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 63, 320
SmoI CTYRAG 2 cut(s) 63, 320
Sse9I AATT 3 cut(s) 52, 278, 338
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 314
TaiI ACGT 3 cut(s) 139, 204, 333
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 52, 278, 338
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 28, 234
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 320
XapI RAATTY 2 cut(s) 52, 278
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.