Rw5G022100

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000341
Physical Location & Seq
Reverse (-)
30315906 .. 30317049
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022100.1

Sequence Viewer

Length: 1032 bp
ATGGCTTTTCAACGCATTAACCTTGTGTTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCTCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCAATGGATGGCAAAGCACGGCCGCGTTTACCCAAATGAGGCAGAGAAGGAAAGGCGTTTGGGCATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGCGAATAAGACTTACAAGTTGAACATCAACAAGTTTTCTGATATGACCAACGAAGAATTCCGGAGATATCATACCGGATTCAAAATGCCCCCCGGCTTAAATTCAACGTCATCCAATTTTAGCTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCGTAGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGGATCAAAAAACATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCTGAGCAGCAACTTGTGGACTGCGATCATCAGAACAAGGGGTGCGGCGGTGGTAACTTAGAATCCGCCTATTCCTACGTAGTACAAAACGGAGGACTCGCTCGGGAAGAAACTTACCCGTACCAGGCAACAGAAATGGGAACATGCGATACTAACAAGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAACTCGTCCCTTCCAGCAGTGAAAACGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGATTGGCATTACTGCTGATGGACAAGATTTTCGGATGTACGGCAGTGGGGTGTATGAATCCGGCGATTGTGGGACGGAGCCCAACCACGCCGTCACGGCCATTGGCTACGGGACGACTGAAGATGGAACCCCCTATTGGTTACTGAAGAACTCATGGGGGGAGGGTTGGGGTGAAAGTGGGTATATGAGGATTCGTAGAAACAGTGATGCCCCAGAGGGTATGTGCAGCCTTGCTGTCAGTCCCATCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

343

Amino Acids

37.93

Weight (kDa)

5.29

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 1.1e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 125 - 341 2.5e-77 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 6 cut(s) 139, 438, 561, 564, 582, 689
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 4 cut(s) 136, 499, 753, 867
AcsI RAATTY 2 cut(s) 281, 325
AcuI CTGAAG 3 cut(s) 169, 909, 935
AfaI GTAC 3 cut(s) 600, 638, 809
AfiI CCNNNNNNNGG 5 cut(s) 154, 358, 421, 640, 906
AgsI TTSAA 5 cut(s) 11, 217, 247, 307, 330
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 889, 921
AluBI AGCT 5 cut(s) 95, 348, 357, 407, 470
AluI AGCT 5 cut(s) 95, 348, 357, 407, 470
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 618
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 136, 499, 753, 867
ApeKI GCWGC 5 cut(s) 362, 464, 467, 523, 996
ApoI RAATTY 2 cut(s) 281, 325
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 403, 953
AvaI CYCGRG 1 cut(s) 618
BalI TGGCCA 1 cut(s) 755
BanII GRGCYC 1 cut(s) 852
BbvI GCAGC 5 cut(s) 349, 476, 479, 535, 1008
BccI CCATC 4 cut(s) 118, 782, 887, 1022
BceAI ACGGC 4 cut(s) 151, 826, 845, 882
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 318
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 740
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 8 cut(s) 139, 363, 465, 468, 524, 562, 690, 997
BlsI GCNGC 8 cut(s) 140, 364, 466, 469, 525, 563, 691, 998
Bme1390I CCNGG 2 cut(s) 318, 641
BmeT110I CYCGRG 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 849, 898
BmrFI CCNGG 2 cut(s) 318, 641
BmsI GCATC 2 cut(s) 189, 967
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 770
BsaAI YACGTR 2 cut(s) 205, 595
BsaJI CCNNGG 2 cut(s) 48, 316
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 5 cut(s) 154, 358, 421, 640, 906
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 3 cut(s) 395, 706, 764
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 641
BseCI ATCGAT 1 cut(s) 770
BseDI CCNNGG 2 cut(s) 48, 316
BseGI GGATG 3 cut(s) 129, 335, 810
BseLI CCNNNNNNNGG 5 cut(s) 154, 358, 421, 640, 906
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 3 cut(s) 395, 706, 764
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 5 cut(s) 349, 476, 479, 535, 1008
BseYI CCCAGC 1 cut(s) 447
BsgI GTGCAG 1 cut(s) 1015
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 138, 501, 755, 869
BshVI ATCGAT 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 5 cut(s) 286, 300, 318, 498, 831
BslFI GGGAC 5 cut(s) 67, 701, 856, 895, 996
BslI CCNNNNNNNGG 5 cut(s) 154, 358, 421, 640, 906
BsmFI GGGAC 5 cut(s) 67, 701, 856, 895, 996
BsnI GGCC 4 cut(s) 138, 501, 755, 869
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 852
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 5 cut(s) 424, 507, 541, 696, 736
BspACI CCGC 6 cut(s) 139, 438, 561, 564, 582, 689
BspANI GGCC 4 cut(s) 138, 501, 755, 869
BspCNI CTCAG 1 cut(s) 511
BspDI ATCGAT 1 cut(s) 770
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 849, 898
BspPI GGATC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 3 cut(s) 395, 706, 764
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 48, 316
BssMI GATC 5 cut(s) 424, 507, 541, 696, 736
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 460, 974
BstBAI YACGTR 2 cut(s) 205, 595
BstC8I GCNNGC 2 cut(s) 445, 687
BstDEI CTNAG 2 cut(s) 519, 574
BstF5I GGATG 3 cut(s) 129, 335, 810
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 5 cut(s) 427, 510, 544, 699, 739
BstMBI GATC 5 cut(s) 424, 507, 541, 696, 736
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 444, 449, 866
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 3 cut(s) 438, 663, 689
BstSCI CCNGG 2 cut(s) 316, 639
BstSFI CTRYAG 1 cut(s) 740
BstSNI TACGTA 1 cut(s) 595
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 5 cut(s) 349, 476, 479, 535, 1008
BstZI CGGCCG 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 770
BsuRI GGCC 4 cut(s) 138, 501, 755, 869
BsuTUI ATCGAT 1 cut(s) 770
BtsCI GGATG 3 cut(s) 129, 335, 810
BtsI GCAGTG 2 cut(s) 733, 820
BtsIMutI CAGTG 4 cut(s) 699, 733, 820, 979
Cac8I GCNNGC 2 cut(s) 445, 687
CaiI CAGNNNCTG 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 497
ClaI ATCGAT 1 cut(s) 770
Csp6I GTAC 3 cut(s) 599, 637, 808
CviAII CATG 7 cut(s) 68, 113, 435, 660, 686, 757, 924
CviQI GTAC 3 cut(s) 599, 637, 808
DdeI CTNAG 2 cut(s) 519, 574
DpnI GATC 5 cut(s) 426, 509, 543, 698, 738
DpnII GATC 5 cut(s) 424, 507, 541, 696, 736
EaeI YGGCCR 4 cut(s) 136, 499, 753, 867
EagI CGGCCG 1 cut(s) 136
EciI GGCGGA 1 cut(s) 571
EclXI CGGCCG 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 852
Eco32I GATATC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 169, 909, 935
Eco88I CYCGRG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 7 cut(s) 71, 116, 438, 663, 689, 760, 927
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 5 cut(s) 67, 701, 856, 895, 996
FatI CATG 7 cut(s) 67, 112, 434, 659, 685, 756, 923
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 8 cut(s) 139, 363, 465, 468, 524, 562, 690, 997
FokI GGATG 3 cut(s) 136, 322, 817
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 8 cut(s) 139, 363, 465, 468, 524, 562, 690, 997
FspBI CTAG 1 cut(s) 381
GluI GCNGC 8 cut(s) 139, 363, 465, 468, 524, 562, 690, 997
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 4 cut(s) 138, 501, 755, 869
HapII CCGG 5 cut(s) 286, 300, 318, 498, 831
Hin1II CATG 7 cut(s) 71, 116, 438, 663, 689, 760, 927
HindIII AAGCTT 2 cut(s) 93, 355
HinfI GANTC 5 cut(s) 303, 578, 612, 827, 961
HpaII CCGG 5 cut(s) 286, 300, 318, 498, 831
HphI GGTGA 2 cut(s) 403, 953
Hpy166II GTNNAC 3 cut(s) 145, 388, 535
Hpy188I TCNGA 5 cut(s) 265, 520, 549, 804, 1023
Hpy188III TCNNGA 3 cut(s) 187, 286, 620
Hpy8I GTNNAC 3 cut(s) 145, 388, 535
HpyAV CCTTC 4 cut(s) 157, 470, 729, 739
HpyCH4III ACNGT 2 cut(s) 460, 974
HpyCH4IV ACGT 3 cut(s) 204, 332, 594
HpyCH4V TGCA 3 cut(s) 760, 996, 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 444, 449, 866
HpyF3I CTNAG 2 cut(s) 519, 574
HpySE526I ACGT 3 cut(s) 204, 332, 594
Hsp92II CATG 7 cut(s) 71, 116, 438, 663, 689, 760, 927
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 5 cut(s) 424, 507, 541, 696, 736
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 5 cut(s) 349, 476, 479, 535, 1008
LweI GCATC 2 cut(s) 189, 967
MaeI CTAG 1 cut(s) 381
MaeII ACGT 3 cut(s) 204, 332, 594
MaeIII GTNAC 4 cut(s) 409, 569, 862, 909
MalI GATC 5 cut(s) 426, 509, 543, 698, 738
MboI GATC 5 cut(s) 424, 507, 541, 696, 736
MboII GAAGA 6 cut(s) 175, 202, 290, 635, 902, 928
MfeI CAATTG 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 852
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 281, 325, 340, 503
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 148, 387, 602, 925, 951, 979
Mox20I TGGCCA 1 cut(s) 755
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 755
MseI TTAA 2 cut(s) 18, 323
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 5 cut(s) 286, 300, 318, 498, 831
MspR9I CCNGG 2 cut(s) 318, 641
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 68, 101, 354, 444, 449, 866
NciI CCSGG 1 cut(s) 318
NdeII GATC 5 cut(s) 424, 507, 541, 696, 736
NlaIII CATG 7 cut(s) 71, 116, 438, 663, 689, 760, 927
NlaIV GGNNCC 2 cut(s) 849, 898
NmuCI GTSAC 2 cut(s) 409, 862
NspI RCATGY 3 cut(s) 438, 663, 689
PaeI GCATGC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 303, 578, 827, 961
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 8 cut(s) 140, 364, 466, 469, 525, 563, 691, 998
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
Ppu21I YACGTR 2 cut(s) 205, 595
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 2 cut(s) 849, 898
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 600, 638, 809
RsaNI GTAC 3 cut(s) 599, 637, 808
SaqAI TTAA 2 cut(s) 18, 323
SatI GCNGC 8 cut(s) 139, 363, 465, 468, 524, 562, 690, 997
Sau3AI GATC 5 cut(s) 424, 507, 541, 696, 736
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 318, 641
SduI GDGCHC 1 cut(s) 852
SfaNI GCATC 2 cut(s) 189, 967
SfcI CTRYAG 1 cut(s) 740
SnaBI TACGTA 1 cut(s) 595
SphI GCATGC 1 cut(s) 689
Sse9I AATT 4 cut(s) 281, 325, 340, 503
SsiI CCGC 6 cut(s) 139, 438, 561, 564, 582, 689
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 316, 639
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 460, 974
TaiI ACGT 3 cut(s) 207, 335, 597
TaqI TCGA 2 cut(s) 198, 770
TasI AATT 4 cut(s) 281, 325, 340, 503
TatI WGTACW 1 cut(s) 598
TauI GCSGC 3 cut(s) 141, 564, 692
TfiI GAWTC 4 cut(s) 303, 578, 827, 961
Tru1I TTAA 2 cut(s) 18, 323
Tru9I TTAA 2 cut(s) 18, 323
TscAI CASTG 4 cut(s) 706, 733, 820, 979
TseFI GTSAC 2 cut(s) 409, 862
TseI GCWGC 5 cut(s) 362, 464, 467, 523, 996
Tsp45I GTSAC 2 cut(s) 409, 862
TspDTI ATGAA 6 cut(s) 31, 72, 105, 237, 723, 840
TspGWI ACGGA 2 cut(s) 621, 860
TspRI CASTG 4 cut(s) 706, 733, 820, 979
Van91I CCANNNNNTGG 1 cut(s) 358
XapI RAATTY 2 cut(s) 281, 325
XceI RCATGY 3 cut(s) 438, 663, 689
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.