Rmu_co7996926.1_g000001

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7996926.1
OG0000341
Physical Location & Seq
Reverse (-)
1 .. 474
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7996926.1_g000001.1.cds

Sequence Viewer

Length: 439 bp
atggcttttcaacgcattaaccttgtgtttatttccatattcattaccttggggactttggcttctcatgccacatcccgttcattgtatgaagcttcccttgctgaaaaacatgagcaatggatggtaaagcacggactcgtttaccccaatgcggcagagaaggaaaggcgtttcggcatcttcaggaagaatgtcgaatacgtggagaagttcaacaatgaagcgaataagacttacaagttgaacatcaacaggttttctgatatgaccaacgaggaattccggagacatcacaccggattcaaaatgccccccggcttaagttcaaagtcatccaattttagctaccaaagcttggctgctactgatattccaattagcgtggactggagggaacaacaagctgtcacccccataaaaaatcaaaattcatgcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

9.44

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 1 cut(s) 155
AcsI RAATTY 2 cut(s) 281, 430
AcuI CTGAAG 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 154, 358
AflII CTTAAG 1 cut(s) 322
AgsI TTSAA 5 cut(s) 11, 217, 247, 307, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 95, 348, 357, 407
AluI AGCT 4 cut(s) 95, 348, 357, 407
Alw26I GTCTC 1 cut(s) 283
Aor13HI TCCGGA 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 281, 430
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 403
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 322
BisI GCNGC 2 cut(s) 156, 363
BlsI GCNGC 2 cut(s) 157, 364
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 48, 316
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 358
Bse1I ACTGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 48, 316
BseGI GGATG 3 cut(s) 74, 129, 335
BseLI CCNNNNNNNGG 2 cut(s) 154, 358
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 286, 300, 318
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 154, 358
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 285
BspACI CCGC 1 cut(s) 155
BspEI TCCGGA 1 cut(s) 285
BspTI CTTAAG 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 48, 316
BssT1I CCWWGG 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 205
BstF5I GGATG 3 cut(s) 74, 129, 335
BstMAI GTCTC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 68, 101, 354
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 349
BtsCI GGATG 3 cut(s) 74, 129, 335
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 3 cut(s) 68, 113, 435
CviJI RGCY 8 cut(s) 5, 62, 95, 321, 348, 357, 362, 407
CviKI_1 RGCY 8 cut(s) 5, 62, 95, 321, 348, 357, 362, 407
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 71, 116, 438
FaiI YATR 7 cut(s) 38, 69, 90, 114, 269, 419, 436
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 67, 112, 434
Fnu4HI GCNGC 2 cut(s) 156, 363
FokI GGATG 3 cut(s) 61, 136, 322
Fsp4HI GCNGC 2 cut(s) 156, 363
GluI GCNGC 2 cut(s) 156, 363
GsuI CTGGAG 1 cut(s) 412
HapII CCGG 3 cut(s) 286, 300, 318
Hin1II CATG 3 cut(s) 71, 116, 438
HindIII AAGCTT 2 cut(s) 93, 355
HinfI GANTC 2 cut(s) 138, 303
HpaII CCGG 3 cut(s) 286, 300, 318
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 145, 388
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 187, 286
Hpy8I GTNNAC 2 cut(s) 145, 388
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 101, 354
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 71, 116, 438
Kpn2I TCCGGA 1 cut(s) 285
LpnPI CCDG 6 cut(s) 172, 241, 299, 313, 331, 376
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 189
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 409
MboII GAAGA 2 cut(s) 175, 202
MluCI AATT 4 cut(s) 281, 340, 378, 430
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 2 cut(s) 271, 387
MroI TCCGGA 1 cut(s) 285
MseI TTAA 2 cut(s) 18, 323
MspCI CTTAAG 1 cut(s) 322
MspI CCGG 3 cut(s) 286, 300, 318
MspR9I CCNGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 68, 101, 354
NciI CCSGG 1 cut(s) 318
NlaIII CATG 3 cut(s) 71, 116, 438
NmuCI GTSAC 1 cut(s) 409
PfeI GAWTC 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 2 cut(s) 157, 364
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 205
SaqAI TTAA 2 cut(s) 18, 323
SatI GCNGC 2 cut(s) 156, 363
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 318
SetI ASST 8 cut(s) 24, 50, 97, 207, 260, 350, 359, 409
SfaNI GCATC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 4 cut(s) 281, 340, 378, 430
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 198
TasI AATT 4 cut(s) 281, 340, 378, 430
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 18, 323
Tru9I TTAA 2 cut(s) 18, 323
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 5 cut(s) 31, 72, 105, 237, 423
TspGWI ACGGA 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 322
XapI RAATTY 2 cut(s) 281, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.