Rorug04G0450200

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000341
Physical Location & Seq
Forward (+)
60514022 .. 60521518
7497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0450200.1

Sequence Viewer

Length: 891 bp
ATGGCGCGCGGCGGCGGCGGCGGTAGCGTGGTGGAGTCGGCGGCGGCGGTGATAGCTTACAATCTGAAAGACTCGTCGAGTTGGTGGCACGACATCAATGCCTCGCAGCTCTGGCAAGACCGAATCTTCCACGGCCTCGCCATTCTCTACGGCCTCGTCGCCGTCGTTGCCCTGGTTCAATTGATCCGGATACAAGTGCGGGTGCCGGAGTACGGCTGGACCACTCAGAAGGTCTTCCACTTTCTCAATTTTGTTGTCAATGCAGTTCGAGCAGCAGTGTTCATTTTCCGCCGGCAAGTACAGAAGCTGCATCCAGAGATTCTCCAACATGTATTGCTTGATATGCCGAGTCTGGCTTTCTTCACTACTTACGCGCTCCTGGTTCTGTTCTGGGCAGAAATTTACTATCAGGCGCGTGCTGTTTCTACAGATGGACTGAGGCCGAGCTTCTTTACAATCAATGCTGCTGTTTATGTAATTCAGATATCTATGTGGTTGATATTATGGTGGAAGCCTATCCCAGTCGTGATCATCTTATCTAAAATGTTCTTTGCAGCTGTCTCGTTATTTGCAGCCCTTGGATTTCTTCTGTATGGTGGAAGACTCTTTTTGATGTTGCAGAGATTTCCTGTGGAGTCAAAAGGAAGACGTAAGAAGCTGCAGGAGGTTGGCTACGTGACAACCATATGTTTTACTTGTTTCCTTGTCAGATGCGTAATGATGTGCTTATGTGCATTTGACAAGGCGGCAGACCTTGATGTTTTGAATCACCCAGTTCTAAACTTAATATATTACCTGTTGGTGGAGATATTGCCTTCTTCTTTGGTTCTTTTCATTTTGAGGAAGTTGCCTCCAAAGCGTGGGATCACACAATATCATCCTATTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

296

Amino Acids

33.79

Weight (kDa)

9.71

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 25 - 296 1.5e-148 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27420 AT3G49340
fragaria_vesca FvH4_3g07960 FvH4_3g07970 FvH4_3g08030 FvH4_3g14350 FvH4_3g14380 FvH4_3g20730
malus_domestica MD04G1190600.v1.1 MD05G1287600.v1.1 MD05G1287900.v1.1 MD05G1288200.v1.1 MD05G1288400.v1.1 MD05G1302800.v1.1 MD10G1281600.v1.1 MD10G1281700.v1.1 MD10G1281800.v1.1 MD10G1282100.v1.1 MD10G1282200.v1.1 MD16G1031600.v1.1 MD16G1032300.v1.1
prunus_persica Prupe.4G059600_v2.0.a1
pyrus_communis pycom10g23500 pycom10g23510 pycom10g23520
rosa_chinensis RchiOBHm_Chr5g0010261 RchiOBHm_Chr5g0010361 RchiOBHm_Chr5g0010391 RchiOBHm_Chr5g0010401 RchiOBHm_Chr5g0023511 RchiOBHm_Chr5g0023601 RchiOBHm_Chr5g0023621 RchiOBHm_Chr5g0023691 RchiOBHm_Chr5g0033681 RchiOBHm_Chr5g0034901 RchiOBHm_Chr5g0034951 RchiOBHm_Chr5g0067391
rosa_laevigata RLG00000016148 RLG00000031732 RLG00000031742 RLG00000031743 RLG00000031748 RLG00000031751 RLG00000031752 RLG00000031754 RLG00000032725 RLG00000032730 RLG00000033542 RLG00000033584 RLG00000033587 RLG00000035932
rosa_multiflora Rmu_co7996926.1_g000001 Rmu_co8207458.1_g000001 Rmu_co8273509.1_g000001 Rmu_sc0000062.1_g000016 Rmu_sc0000062.1_g000017 Rmu_sc0001580.1_g000004 Rmu_sc0001580.1_g000023 Rmu_sc0007816.1_g000005 Rmu_sc0007816.1_g000009 Rmu_sc0008877.1_g000003 Rmu_sc0009313.1_g000011 Rmu_sc0009313.1_g000015 Rmu_sc0009313.1_g000021
rosa_roxburghii Rroxscaffold_1G00012970 Rroxscaffold_1G00045430 Rroxscaffold_1G00055550 Rroxscaffold_1G00065850 Rroxscaffold_1G00065880 Rroxscaffold_1G00065890 Rroxscaffold_1G00065900 Rroxscaffold_1G00065990
rosa_rugosa Rorug04G0450100 Rorug04G0450100 Rorug04G0450200 Rorug04G0451200 Rorug05G0145700 Rorug05G0149000 Rorug05G0385000
rosa_samantha Rh5AG080800 Rh5AG081500 Rh5AG081700 Rh5AG081900 Rh5AG167500 Rh5AG168500 Rh5AG232900 Rh5AG241400 Rh5AG242000 Rh5AG444500 Rh5BG075300 Rh5BG076500 Rh5BG076600 Rh5BG077000 Rh5BG165800 Rh5BG237800 Rh5BG241500 Rh5BG241600 Rh5BG461200 Rh5BG461300
rosa_wichuraiana Rw0G000780 Rw0G021930 Rw5G007480 Rw5G007560 Rw5G007570 Rw5G015200 Rw5G015260 Rw5G022090 Rw5G022100 Rw5G041490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 860
AccII CGCG 4 cut(s) 7, 9, 374, 415
AccIII TCCGGA 1 cut(s) 186
AclWI GGATC 2 cut(s) 178, 872
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 2 cut(s) 212, 300
AfiI CCNNNNNNNGG 3 cut(s) 212, 802, 860
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 2 cut(s) 179, 766
AjnI CCWGG 2 cut(s) 171, 378
AluBI AGCT 6 cut(s) 56, 109, 307, 447, 557, 658
AluI AGCT 6 cut(s) 56, 109, 307, 447, 557, 658
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 2 cut(s) 178, 872
AlwNI CAGNNNCTG 1 cut(s) 307
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 3 cut(s) 133, 151, 440
ApeKI GCWGC 7 cut(s) 106, 272, 307, 464, 554, 572, 658
ApoI RAATTY 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 4 cut(s) 7, 9, 376, 415
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 61, 761
AvaII GGWCC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 202
BbsI GAAGAC 3 cut(s) 226, 607, 652
BbvI GCAGC 7 cut(s) 118, 284, 294, 451, 566, 584, 645
BccI CCATC 1 cut(s) 425
BceAI ACGGC 4 cut(s) 146, 148, 166, 229
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 543, 577
BciT130I CCWGG 2 cut(s) 173, 380
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 1 cut(s) 565
BfmI CTRYAG 2 cut(s) 426, 659
BfuI GTATCC 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 173, 380
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 173, 380
BmrI ACTGGG 2 cut(s) 515, 767
BmsI GCATC 2 cut(s) 319, 701
BmuI ACTGGG 2 cut(s) 515, 767
BpiI GAAGAC 3 cut(s) 226, 607, 652
BsaAI YACGTR 1 cut(s) 676
BsaJI CCNNGG 3 cut(s) 130, 171, 577
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 802, 860
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 521, 773
BseAI TCCGGA 1 cut(s) 186
BseBI CCWGG 2 cut(s) 173, 380
BseDI CCNNGG 3 cut(s) 130, 171, 577
BseGI GGATG 2 cut(s) 310, 877
BseLI CCNNNNNNNGG 3 cut(s) 212, 802, 860
BseMII CTCAG 2 cut(s) 239, 428
BseNI ACTGG 2 cut(s) 521, 773
BsePI GCGCGC 1 cut(s) 5
BseXI GCAGC 7 cut(s) 118, 284, 294, 451, 566, 584, 645
Bsh1236I CGCG 4 cut(s) 7, 9, 374, 415
BshFI GGCC 3 cut(s) 135, 153, 442
BshNI GGYRCC 1 cut(s) 202
BsiSI CCGG 3 cut(s) 187, 206, 292
BslI CCNNNNNNNGG 3 cut(s) 212, 802, 860
BsmAI GTCTC 1 cut(s) 565
BsnI GGCC 3 cut(s) 135, 153, 442
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 183, 528, 864
BspANI GGCC 3 cut(s) 135, 153, 442
BspCNI CTCAG 2 cut(s) 238, 429
BspEI TCCGGA 1 cut(s) 186
BspFNI CGCG 4 cut(s) 7, 9, 374, 415
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 178, 872
BspT107I GGYRCC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 2 cut(s) 521, 773
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 3 cut(s) 130, 171, 577
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 3 cut(s) 183, 528, 864
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 2 cut(s) 173, 380
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 3 cut(s) 7, 293, 417
BstDEI CTNAG 2 cut(s) 225, 437
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 310, 877
BstFNI CGCG 4 cut(s) 7, 9, 374, 415
BstHHI GCGC 4 cut(s) 7, 9, 376, 415
BstKTI GATC 3 cut(s) 186, 531, 867
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 3 cut(s) 183, 528, 864
BstMWI GCNNNNNNNGC 9 cut(s) 15, 18, 24, 53, 112, 167, 269, 343, 856
BstNI CCWGG 2 cut(s) 173, 380
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 171, 378
BstSFI CTRYAG 2 cut(s) 426, 659
BstUI CGCG 4 cut(s) 7, 9, 374, 415
BstV1I GCAGC 7 cut(s) 118, 284, 294, 451, 566, 584, 645
BstV2I GAAGAC 3 cut(s) 226, 607, 652
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 3 cut(s) 135, 153, 442
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 310, 877
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 7, 293, 417
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 4 cut(s) 7, 9, 376, 415
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 211, 299
CviAII CATG 1 cut(s) 329
CviQI GTAC 2 cut(s) 211, 299
DdeI CTNAG 2 cut(s) 225, 437
DpnI GATC 3 cut(s) 185, 530, 866
DpnII GATC 3 cut(s) 183, 528, 864
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 577
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 171, 378
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 1 cut(s) 332
FatI CATG 1 cut(s) 328
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 686
FbaI TGATCA 1 cut(s) 528
FokI GGATG 2 cut(s) 297, 864
GlaI GCGC 4 cut(s) 6, 8, 375, 414
HaeIII GGCC 3 cut(s) 135, 153, 442
HapII CCGG 3 cut(s) 187, 206, 292
HhaI GCGC 4 cut(s) 7, 9, 376, 415
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 4 cut(s) 5, 7, 374, 413
HinP1I GCGC 4 cut(s) 5, 7, 374, 413
HinfI GANTC 8 cut(s) 35, 71, 123, 319, 349, 603, 635, 766
HpaII CCGG 3 cut(s) 187, 206, 292
HphI GGTGA 2 cut(s) 61, 761
Hpy188I TCNGA 4 cut(s) 66, 228, 483, 710
Hpy188III TCNNGA 3 cut(s) 187, 314, 526
Hpy99I CGWCG 3 cut(s) 79, 161, 167
HpyAV CCTTC 2 cut(s) 223, 825
HpyCH4IV ACGT 2 cut(s) 649, 675
HpyCH4V TGCA 7 cut(s) 263, 310, 554, 572, 619, 661, 734
HpyF10VI GCNNNNNNNGC 9 cut(s) 15, 18, 24, 53, 112, 167, 269, 343, 856
HpyF3I CTNAG 2 cut(s) 225, 437
HpySE526I ACGT 2 cut(s) 649, 675
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 4 cut(s) 5, 7, 374, 413
Kpn2I TCCGGA 1 cut(s) 186
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 3 cut(s) 183, 528, 864
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 7 cut(s) 118, 284, 294, 451, 566, 584, 645
LweI GCATC 2 cut(s) 319, 701
MaeII ACGT 2 cut(s) 649, 675
MaeIII GTNAC 1 cut(s) 676
MalI GATC 3 cut(s) 185, 530, 866
MboI GATC 3 cut(s) 183, 528, 864
MboII GAAGA 7 cut(s) 118, 226, 352, 578, 612, 657, 810
MfeI CAATTG 1 cut(s) 179
MluCI AATT 4 cut(s) 179, 247, 399, 477
MlyI GAGTC 5 cut(s) 44, 65, 358, 597, 644
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 7 cut(s) 112, 146, 164, 432, 658, 834, 861
MroI TCCGGA 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 3 cut(s) 187, 206, 292
MspR9I CCNGG 2 cut(s) 173, 380
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 2 cut(s) 173, 380
MvnI CGCG 4 cut(s) 7, 9, 374, 415
MwoI GCNNNNNNNGC 9 cut(s) 15, 18, 24, 53, 112, 167, 269, 343, 856
NaeI GCCGGC 1 cut(s) 293
NdeI CATATG 1 cut(s) 686
NdeII GATC 3 cut(s) 183, 528, 864
NgoMIV GCCGGC 1 cut(s) 291
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 204
NmeAIII GCCGAG 2 cut(s) 372, 468
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 1 cut(s) 332
PauI GCGCGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 3 cut(s) 123, 319, 766
PflMI CCANNNNNTGG 1 cut(s) 860
PleI GAGTC 5 cut(s) 43, 65, 357, 597, 643
PpsI GAGTC 5 cut(s) 43, 65, 357, 597, 643
Ppu21I YACGTR 1 cut(s) 676
PscI ACATGT 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 171, 378
PspGI CCWGG 2 cut(s) 171, 378
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 219
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 307
PteI GCGCGC 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 212, 300
RsaNI GTAC 2 cut(s) 211, 299
SaqAI TTAA 1 cut(s) 785
Sau3AI GATC 3 cut(s) 183, 528, 864
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 5 cut(s) 44, 65, 358, 597, 644
ScrFI CCNGG 2 cut(s) 173, 380
SfaNI GCATC 2 cut(s) 319, 701
SfcI CTRYAG 2 cut(s) 426, 659
SinI GGWCC 1 cut(s) 219
Sse9I AATT 4 cut(s) 179, 247, 399, 477
StyD4I CCNGG 2 cut(s) 171, 378
StyI CCWWGG 1 cut(s) 577
TaiI ACGT 2 cut(s) 652, 678
TaqI TCGA 2 cut(s) 77, 268
TaqII GACCGA 1 cut(s) 135
TasI AATT 4 cut(s) 179, 247, 399, 477
TatI WGTACW 1 cut(s) 298
TauI GCSGC 7 cut(s) 12, 15, 18, 21, 44, 47, 749
TfiI GAWTC 3 cut(s) 123, 319, 766
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 7 cut(s) 106, 272, 307, 464, 554, 572, 658
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 2 cut(s) 271, 823
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 399
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.