Rw2G026200

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
40410073 .. 40410273
201 bp
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UTR
Exon/CDS
Intron
Rw2G026200.1

Sequence Viewer

Length: 201 bp
ATGGCCGGCGGATGGAAGCCGATTAAGGACATCAACGACCCACACGTGAAGGAGATCACGGAGTTCACAGTGTTGGAGTACAAGAAATCTTGGAAGAAGCTGGAGTTTCAAAGCATGGTGAATGGAGAGACTCAGGTTGTCGCCGGCAAAAACTACTGGCTCGTCATCGCCGTTAAGGATAACTTAGTGTCTGCCAAGTAG

Protein Analysis

66

Amino Acids

7.55

Weight (kDa)

8.96

Isoelectric Point (pI)

16.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 3 - 61 2.4e-08 Cystatin domain
SQAPI PF16845 8 - 61 2.3e-17 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 46
BccI CCATC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 2 cut(s) 5, 143
Bse1I ACTGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 161
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 6, 144
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 145
BsrFI RCCGGY 2 cut(s) 5, 143
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 2 cut(s) 5, 143
BssMI GATC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 7, 145
BstDEI CTNAG 2 cut(s) 132, 184
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 7, 145
Cfr10I RCCGGY 2 cut(s) 5, 143
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 5, 19, 100, 160
CviKI_1 RGCY 4 cut(s) 5, 19, 100, 160
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 132, 184
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 24
Eco72I CACGTG 1 cut(s) 46
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 114
FokI GGATG 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 144
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 6, 144
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 45
HpyF3I CTNAG 2 cut(s) 132, 184
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 118
KroI GCCGGC 2 cut(s) 5, 143
KroNI GCCGGC 2 cut(s) 7, 145
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 19, 86, 119, 142, 157
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 106
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 54
MroNI GCCGGC 2 cut(s) 5, 143
MseI TTAA 2 cut(s) 24, 174
MspI CCGG 2 cut(s) 6, 144
NaeI GCCGGC 2 cut(s) 7, 145
NdeII GATC 1 cut(s) 54
NgoMIV GCCGGC 2 cut(s) 5, 143
NlaIII CATG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 168
PdiI GCCGGC 2 cut(s) 7, 145
PleI GAGTC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 46
PspCI CACGTG 1 cut(s) 46
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 24, 174
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 124
SetI ASST 3 cut(s) 48, 102, 138
SsiI CCGC 1 cut(s) 9
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 48
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 2 cut(s) 24, 174
Tru9I TTAA 2 cut(s) 24, 174
TscAI CASTG 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.