Rw0G000700

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00020
Physical Location & Seq
Forward (+)
120977 .. 121369
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000700.1

Sequence Viewer

Length: 393 bp
ATGACGAAACGTGTTTTCTCCCTCGACCTCTTTACTTTCCTCCTTCTCGCCGGCCTCTTTGCTCACCTGAGTCACCTCCTGCTCGCCGACCCCGATGACAATCCTAACTACGGCGCTTATCACCCCATTAAGGACATCCACGACCCCCATGTGATAGAGATCGCGGAGTTTGCTGTCTCCGAGCTCAACAAGGAACTACGGAAGAAGCTGGTGTTTCAGAGCGTGGTTCGAGGTGAGAGTCAGGTTGTAGCGGGACAAAATTATAAGCTTGTCGTCGCGGTCAAGGATGAGTCCTCCTACCCCACCTCCACTGTGAATTATGAGTGTGTTGTCTGGGAGAAGGTTTGGCTAAAGTTTAGGAAATTGACCTCCTTTCATGAGGTTAAAACCTAA

Protein Analysis

130

Amino Acids

14.92

Weight (kDa)

6.58

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 38 - 128 7e-14 Cystatin domain
SQAPI PF16845 43 - 128 1.1e-32 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47550
fragaria_vesca FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccII CGCG 2 cut(s) 164, 278
AciI CCGC 3 cut(s) 164, 251, 278
AfiI CCNNNNNNNGG 2 cut(s) 110, 130
AflIII ACRYGT 1 cut(s) 10
AluBI AGCT 3 cut(s) 184, 208, 268
AluI AGCT 3 cut(s) 184, 208, 268
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 181
AoxI GGCC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 56, 65, 113, 245
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 117
BsaBI GATNNNNATC 2 cut(s) 99, 158
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 130
Bse118I RCCGGY 1 cut(s) 50
Bse8I GATNNNNATC 2 cut(s) 99, 158
BseGI GGATG 2 cut(s) 135, 292
BseJI GATNNNNATC 2 cut(s) 99, 158
BseLI CCNNNNNNNGG 2 cut(s) 110, 130
BseMII CTCAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 164, 278
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 110, 130
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 159
BspACI CCGC 3 cut(s) 164, 251, 278
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 164, 278
BspHI TCATGA 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 52, 84
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 135, 292
BstFNI CGCG 2 cut(s) 164, 278
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstUI CGCG 2 cut(s) 164, 278
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 2 cut(s) 135, 292
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 52, 84
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 50
CviAII CATG 2 cut(s) 149, 377
CviJI RGCY 5 cut(s) 54, 184, 208, 268, 349
CviKI_1 RGCY 5 cut(s) 54, 184, 208, 268, 349
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 152, 380
FaiI YATR 4 cut(s) 150, 264, 321, 378
FaqI GGGAC 1 cut(s) 267
FatI CATG 2 cut(s) 148, 376
FauI CCCGC 1 cut(s) 244
FokI GGATG 2 cut(s) 122, 299
FriOI GRGCYC 1 cut(s) 186
GlaI GCGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 152, 380
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 70, 238, 290
HpaII CCGG 1 cut(s) 51
HphI GGTGA 4 cut(s) 56, 65, 113, 245
Hpy188I TCNGA 2 cut(s) 181, 219
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 53, 334
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 152, 380
HspAI GCGC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 159
LpnPI CCDG 6 cut(s) 64, 80, 92, 194, 227, 319
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 259, 316, 362
MlyI GAGTC 3 cut(s) 79, 247, 299
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 2 cut(s) 129, 384
MspI CCGG 1 cut(s) 51
MvnI CGCG 2 cut(s) 164, 278
MwoI GCNNNNNNNGC 1 cut(s) 170
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 1 cut(s) 159
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 152, 380
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 52
PleI GAGTC 3 cut(s) 78, 246, 298
PpsI GAGTC 3 cut(s) 78, 246, 298
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 129, 384
Sau3AI GATC 1 cut(s) 159
SchI GAGTC 3 cut(s) 79, 247, 299
SduI GDGCHC 1 cut(s) 186
Sse9I AATT 3 cut(s) 259, 316, 362
SsiI CCGC 3 cut(s) 164, 251, 278
SstI GAGCTC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 24, 229
TasI AATT 3 cut(s) 259, 316, 362
Tru1I TTAA 2 cut(s) 129, 384
Tru9I TTAA 2 cut(s) 129, 384
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.