Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

22316614 .. 22316976

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCGTCTTCAATGGGTTCTTGCAGTCCTTGTTCTGGTCGTTCCACTCGTGACTGCTGCTGCCCCAGATGTAGCTCTTGAGACTTGGGATCCCGTACAGAACACCAGCGAACCATATTGGATAAATACCGCAGAGTTCGCTGTCTCTTCGTATAACAAGCATGAGAAGAAGAATTTGGTGTTTGAAAGCGTGGTCAAGGGCAAGACACGCTACGAGGTAACAGGCCTCTATATCGTCCTTGTCATTAAGGTCAAAGATGGGTCATTGCCCAGCGCAAATTATGATGTTGGAGTACGTGATAAGTATGCTGGTCCTAATCCTTTGGATTTGATATACTTTCGCAGAAGACCTAAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

9.15

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	2 cut(s)	83, 96
AcsI	RAATTY	2 cut(s)	172, 353
AfaI	GTAC	2 cut(s)	96, 294
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	11, 185
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	74, 148
AlwI	GGATC	2 cut(s)	83, 96
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	56, 59
ApoI	RAATTY	2 cut(s)	172, 353
ArsI	GACNNNNNNTTYG	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	43, 46
BccI	CCATC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	74, 148
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	43, 46
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	74, 148
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	83, 96
BsrDI	GCAATG	1 cut(s)	263
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	74, 148
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 207
BstV1I	GCAGC	2 cut(s)	43, 46
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	95, 293
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	2 cut(s)	74, 225
CviKI_1	RGCY	2 cut(s)	74, 225
CviQI	GTAC	2 cut(s)	95, 293
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	311
FaeI	CATG	1 cut(s)	164
FaiI	YATR	7 cut(s)	115, 153, 162, 231, 282, 306, 334
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	57, 60
Fsp4HI	GCNGC	2 cut(s)	57, 60
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	57, 60
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	49, 77
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 207
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	20, 78, 118, 207, 283, 294
Lsp1109I	GCAGC	2 cut(s)	43, 46
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	49, 217
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	4 cut(s)	138, 178, 181, 357
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	3 cut(s)	172, 277, 353
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	208, 236
MseI	TTAA	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	137, 207
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	58, 61
Ppu21I	YACGTR	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	96, 294
RsaNI	GTAC	2 cut(s)	95, 293
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	311
SetI	ASST	5 cut(s)	76, 219, 252, 298, 352
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	172, 277, 353
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	298
TasI	AATT	3 cut(s)	172, 277, 353
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	56, 59
Tsp45I	GTSAC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	172, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.