Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000425

Physical Location & Seq

Genomic Coordinates Forward (+)

34652909 .. 34653256

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATACGTCCTCAGTGCTTTCTTATTACATTTCTTGCTCTCCTTCTTCCTCTCATCTCTGCTGATAACTTTCAGAAGCCTTGGACGCCTGTAAACATCAGCGACCCAGCTGTAAAGGCTATCGGAGAGTTTGCAGTCACCGAGTATAACAAGGGAACTACACTGAAGTTAGTCTTTCAAAGCTTGGTTTCTGGGAAGTCTACGCCTAGAGGGTCGGGCTCCTGGTTCGAGCTTGTTATTGGGGCAAAGAATGAGTCATTGCCTAGCTTTGCGAATTATTTGGCAGGTGTTTTGTATTTACCTCGTATGCCGTTGGAACTGCATACGTTTCAAAAAGTCCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

115

Amino Acids

12.74

Weight (kDa)

9.21

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	32 - 112	1.8e-12	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47550
fragaria_vesca	FvH4_3g00830 FvH4_3g07950 FvH4_3g08020 FvH4_3g34980 FvH4_6g03900 FvH4_6g08240
malus_domestica	MD03G1148300.v1.1 MD04G1217400.v1.1 MD05G1358700.v1.1 MD05G1358900.v1.1 MD05G1359200.v1.1 MD10G1333500.v1.1 MD12G1232100.v1.1
prunus_persica	Prupe.4G008900_v2.0.a1 Prupe.4G009000_v2.0.a1 Prupe.4G009100_v2.0.a1 Prupe.6G215700_v2.0.a1 Prupe.6G335600_v2.0.a1 Prupe.6G335700_v2.0.a1
pyrus_communis	pycom04g19190 pycom05g32440 pycom12g21450 pycom12g21470
rosa_chinensis	RchiOBHm_Chr1g0361291 RchiOBHm_Chr3g0452681 RchiOBHm_Chr3g0455001 RchiOBHm_Chr5g0001051 RchiOBHm_Chr5g0001151 RchiOBHm_Chr5g0010271 RchiOBHm_Chr5g0010621
rosa_laevigata	RLG00000025391 RLG00000025394 RLG00000027728 RLG00000030917 RLG00000031733 RLG00000031766
rosa_multiflora	Rmu_co8350815.1_g000001 Rmu_co8502581.1_g000001 Rmu_sc0000255.1_g000041 Rmu_sc0000818.1_g000015 Rmu_sc0001706.1_g000018 Rmu_sc0001706.1_g000034 Rmu_sc0002150.1_g000001 Rmu_sc0004189.1_g000004 Rmu_sc0014635.1_g000005 Rmu_sc0016264.1_g000005 Rmu_sc0016264.1_g000006 Rmu_sc0021253.1_g000005 Rmu_ssc0000156.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065750 Rroxscaffold_1G00065970 Rroxscaffold_1G00075200 Rroxscaffold_1G00075240 Rroxscaffold_4G00295080 Rroxscaffold_6G00412050 Rroxscaffold_6G00424610
rosa_rugosa	Rorug01G0287800 Rorug02G0642700 Rorug03G0004000 Rorug04G0389300 Rorug04G0449900 Rorug04G0450000 Rorug04G0451200 Rorug05G0127000
rosa_samantha	Rh1AG227300 Rh1AG299200 Rh1BG263000 Rh1CG280500 Rh1DG293000 Rh3AG045000 Rh3AG063500 Rh3BG047300 Rh3BG065400 Rh3CG045800 Rh3CG064300 Rh3DG065500 Rh4CG037800 Rh5AG080900 Rh5BG010600 Rh5BG011000 Rh5BG011100 Rh5BG075500 Rh5CG009200 Rh5CG009700 Rh5CG089100 Rh5CG090700 Rh5DG078200
rosa_wichuraiana	Rw0G000700 Rw0G021870 Rw1G026470 Rw2G026200 Rw3G004990 Rw4G002670 Rw5G000930 Rw5G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	179, 332
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	110, 183, 232, 267
AluI	AGCT	4 cut(s)	110, 183, 232, 267
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AsuHPI	GGTGA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	2 cut(s)	207, 264
BfuAI	ACCTGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 116
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	20, 161
BveI	ACCTGC	1 cut(s)	275
CseI	GACGC	1 cut(s)	94
CviJI	RGCY	7 cut(s)	79, 110, 119, 183, 219, 232, 267
CviKI_1	RGCY	7 cut(s)	79, 110, 119, 183, 219, 232, 267
DdeI	CTNAG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	80
FaiI	YATR	3 cut(s)	147, 308, 324
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FblI	GTMKAC	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	207, 264
GsaI	CCCAGC	1 cut(s)	110
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	94, 201
Hpy188I	TCNGA	2 cut(s)	75, 125
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	94, 201
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	7, 326
HpyCH4V	TGCA	2 cut(s)	134, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 116
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	7, 326
Hsp92I	GRCGYC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	102, 120, 177, 208, 235, 270
MaeI	CTAG	2 cut(s)	207, 264
MaeII	ACGT	2 cut(s)	7, 326
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	21, 60, 203, 312
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	85, 116
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	136
PaqCI	CACCTGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	110
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	8 cut(s)	10, 112, 185, 234, 269, 289, 304, 329
Sse9I	AATT	1 cut(s)	274
SspMI	CTAG	2 cut(s)	207, 264
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	80
TaiI	ACGT	2 cut(s)	10, 329
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	274
TscAI	CASTG	2 cut(s)	20, 168
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspRI	CASTG	2 cut(s)	20, 168
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	2 cut(s)	207, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.