Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Forward (+)

28907469 .. 28908270

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCTTTGTCAAGGGAGTCTTGGTGCAAGGCATCAAACTGGATGGCGTATGCTGCTGTGGCGACAGATGAAGGAAAGGCTGCATTGGGCAGGAGAGACATTGTGATTGCTTGGAGAGGCACTGTGCAGTCCTTGGAGTGGGTTAATAACTTGCAATTTAATTTGGTTTCTTCGTCAAACATACTAGGCGAGGAAGGTGATCCAAAGGTGCACCAAGGTTGGTACTCCATCTATACTTCAGATGATTCACATTCGCCTTTCAACAAAACTAGTGTCATTGAAGAAGTTAGGAGACTAGTAGAGCAATACAAGGATGAGGAAATTAGTATCACCATAACAGGGCACGGTTTGGGTGCAGCAATTGCCACGCTAAGTGCAATTGACATTGTTGCCAATGGACTTAACAGGCCAAAGGACCTGCCAAACAAAGCCTGCCCAGCTACAGCCATTTTGTTCGCAAGCCCTCGAGTTGGAAACTCAAACTTTGAGAAGGTCTTCTCCGGCTACAAAGATCTTCGAGCCTTGCACGTTCATAATACCTTAGATGTTGTCACAAACTATCCAATTTTTTTTTGGGTACTCCGACGTGGGATAAGAGTTGGCAATCGACACACAAAAATCCAAGTACCTGAAGAGTCCTGGACGAGTGGCGAGTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

221

Amino Acids

24.47

Weight (kDa)

6.6

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	2 cut(s)	222, 651
AfaI	GTAC	3 cut(s)	224, 579, 627
AfiI	CCNNNNNNNGG	3 cut(s)	138, 339, 470
AgsI	TTSAA	2 cut(s)	262, 281
AhlI	ACTAGT	2 cut(s)	269, 295
AjiI	CACGTC	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	90, 286
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	1 cut(s)	407
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	53, 80, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
Asp700I	GAANNNNTTC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	209, 322
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	2 cut(s)	213, 345
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	40, 67, 368
BccI	CCATC	2 cut(s)	37, 236
BciT130I	CCWGG	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	90, 286
BcuI	ACTAGT	2 cut(s)	269, 295
BfaI	CTAG	3 cut(s)	185, 270, 296
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	54, 81, 357
BlsI	GCNGC	3 cut(s)	55, 82, 358
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	465
BmgBI	CACGTC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	132, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 339, 470
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	132, 214
BseGI	GGATG	2 cut(s)	48, 319
BseLI	CCNNNNNNNGG	3 cut(s)	138, 339, 470
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	213, 345
BseXI	GCAGC	3 cut(s)	40, 67, 368
BseYI	CCCAGC	1 cut(s)	436
BsgI	GTGCAG	2 cut(s)	146, 375
BshFI	GGCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	138, 339, 470
BsmAI	GTCTC	2 cut(s)	90, 286
BsnI	GGCC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	213, 345
Bsp143I	GATC	2 cut(s)	199, 511
BspANI	GGCC	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	132, 214
BssMI	GATC	2 cut(s)	199, 511
BssT1I	CCWWGG	2 cut(s)	132, 214
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	2 cut(s)	124, 347
Bst6I	CTCTTC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	433, 460
BstDEI	CTNAG	2 cut(s)	371, 541
BstF5I	GGATG	2 cut(s)	48, 319
BstKTI	GATC	2 cut(s)	202, 514
BstMAI	GTCTC	2 cut(s)	90, 286
BstMBI	GATC	2 cut(s)	199, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 59, 362, 437
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	2 cut(s)	213, 345
BstV1I	GCAGC	3 cut(s)	40, 67, 368
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	48, 319
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	433, 460
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	223, 578, 626
CviJI	RGCY	8 cut(s)	80, 409, 431, 440, 446, 462, 504, 521
CviKI_1	RGCY	8 cut(s)	80, 409, 431, 440, 446, 462, 504, 521
CviQI	GTAC	3 cut(s)	223, 578, 626
DdeI	CTNAG	2 cut(s)	371, 541
DpnI	GATC	2 cut(s)	201, 513
DpnII	GATC	2 cut(s)	199, 511
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	132, 214
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	222, 651
Eco88I	CYCGRG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	2 cut(s)	132, 214
ErhI	CCWWGG	2 cut(s)	132, 214
FaiI	YATR	6 cut(s)	51, 182, 234, 335, 534, 661
FalI	AAGNNNNNCTT	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	54, 81, 357
FokI	GGATG	2 cut(s)	55, 326
Fsp4HI	GCNGC	3 cut(s)	54, 81, 357
FspBI	CTAG	3 cut(s)	185, 270, 296
GluI	GCNGC	3 cut(s)	54, 81, 357
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	409
HapII	CCGG	1 cut(s)	501
HinfI	GANTC	3 cut(s)	17, 245, 635
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	209, 322
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	241, 584
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	3 cut(s)	65, 188, 484
HpyCH4III	ACNGT	2 cut(s)	124, 347
HpyCH4IV	ACGT	2 cut(s)	528, 586
HpyCH4V	TGCA	8 cut(s)	27, 83, 127, 154, 211, 356, 377, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 59, 362, 437
HpyF3I	CTNAG	2 cut(s)	371, 541
HpySE526I	ACGT	2 cut(s)	528, 586
Kzo9I	GATC	2 cut(s)	199, 511
Lsp1109I	GCAGC	3 cut(s)	40, 67, 368
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	3 cut(s)	185, 270, 296
MaeII	ACGT	2 cut(s)	528, 586
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	2 cut(s)	201, 513
MboI	GATC	2 cut(s)	199, 511
MboII	GAAGA	5 cut(s)	162, 293, 487, 506, 644
MfeI	CAATTG	2 cut(s)	360, 378
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	213, 345
MluCI	AATT	6 cut(s)	155, 160, 321, 360, 378, 564
MlyI	GAGTC	2 cut(s)	26, 644
MmeI	TCCRAC	2 cut(s)	451, 607
MnlI	CCTC	4 cut(s)	110, 184, 310, 474
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	3 cut(s)	144, 159, 402
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	640
MunI	CAATTG	2 cut(s)	360, 378
MvaI	CCWGG	1 cut(s)	640
MwoI	GCNNNNNNNGC	4 cut(s)	53, 59, 362, 437
NdeII	GATC	2 cut(s)	199, 511
NmuCI	GTSAC	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	55, 82, 358
PleI	GAGTC	2 cut(s)	25, 643
PpsI	GAGTC	2 cut(s)	25, 643
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PspXI	VCTCGAGB	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	3 cut(s)	224, 579, 627
RsaNI	GTAC	3 cut(s)	223, 578, 626
SaqAI	TTAA	3 cut(s)	144, 159, 402
SatI	GCNGC	3 cut(s)	54, 81, 357
Sau3AI	GATC	2 cut(s)	199, 511
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	26, 644
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	2 cut(s)	213, 345
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SpeI	ACTAGT	2 cut(s)	269, 295
Sse9I	AATT	6 cut(s)	155, 160, 321, 360, 378, 564
SspMI	CTAG	3 cut(s)	185, 270, 296
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	2 cut(s)	132, 214
TaaI	ACNGT	2 cut(s)	124, 347
TaiI	ACGT	2 cut(s)	531, 589
TaqI	TCGA	3 cut(s)	466, 517, 607
TasI	AATT	6 cut(s)	155, 160, 321, 360, 378, 564
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	144, 159, 402
Tru9I	TTAA	3 cut(s)	144, 159, 402
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	3 cut(s)	53, 80, 356
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	84, 521
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	570
XhoI	CTCGAG	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	3 cut(s)	185, 270, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.