Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415181.1

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Forward (+)

669 .. 1316

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgtttggtcacaagaaaaagatggatagcattattggcaagcacagcattgtgaaaagatggaagaaactaagcggcgaagacaactgggaaggcatgttggatcctctcgacattgatcttcgaaagtacataattcactatggcgaaatggctcaatctacatatgatgctttcaacacagagagggcatcaaagtttgcaggaagcagcaggtatgccaggaagaccttcttctcgaaagtttgtttagagaagggcaatgcatttaggtacaaagtgaccaagtttgtgtatgcaacttcacaaattcaagtcccggaagcatttatcgttaagtctttgtcaagggaggcttggagcaaagaatcaaattggatggggtatgttgctgtggccacagatgaggggaaggctgtgttgggcaggagggacattgtgattgcttggagaggtactgttcagtccttggagtgggttaatgatttgcagttcaatatggtttctgcttcaaaaatactaggtgaggaggctgatgctaaggtgcaccaaggttggcactccatctatacttccgaagattcacgttcgcctttcaacaaaaccagtgccagaattcaggttttacttatcacttgtctaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

215

Amino Acids

24.59

Weight (kDa)

9.39

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	98, 111
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	309, 615
AfaI	GTAC	3 cut(s)	131, 275, 457
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	178, 314, 496, 513, 598
AjnI	CCWGG	1 cut(s)	221
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
Alw21I	GWGCWC	1 cut(s)	549
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	98, 111
AoxI	GGCC	1 cut(s)	396
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	2 cut(s)	309, 615
Asp700I	GAANNNNTTC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	87, 233
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	4 cut(s)	16, 54, 373, 572
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	204
BisI	GCNGC	2 cut(s)	76, 211
BlsI	GCNGC	2 cut(s)	77, 212
Bme1390I	CCNGG	2 cut(s)	223, 320
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	223, 320
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	160, 200, 526
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	2 cut(s)	87, 233
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	468, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	92, 606
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	468, 550
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	268
BseNI	ACTGG	2 cut(s)	92, 606
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	302, 446
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmFI	GGGAC	2 cut(s)	302, 446
BsnI	GGCC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	103, 118
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	98, 111
BspT104I	TTCGAA	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	92, 606
BssECI	CCNNGG	2 cut(s)	468, 550
BssMI	GATC	2 cut(s)	103, 118
BssT1I	CCWWGG	2 cut(s)	468, 550
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	71, 540
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	106, 121
BstMBI	GATC	2 cut(s)	103, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	221, 318
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	2 cut(s)	87, 233
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	130, 274, 456
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	155, 356, 398, 416, 533
CviKI_1	RGCY	5 cut(s)	155, 356, 398, 416, 533
CviQI	GTAC	3 cut(s)	130, 274, 456
DdeI	CTNAG	2 cut(s)	71, 540
DpnI	GATC	2 cut(s)	105, 120
DpnII	GATC	2 cut(s)	103, 118
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	468, 550
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	468, 550
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	468, 550
FaeI	CATG	1 cut(s)	100
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 340, 372
FaqI	GGGAC	2 cut(s)	302, 446
FatI	CATG	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	76, 211
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	76, 211
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	2 cut(s)	76, 211
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	368, 581
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	2 cut(s)	110, 238
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	4 cut(s)	86, 241, 250, 406
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	203, 266, 299, 490, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
HpyF3I	CTNAG	2 cut(s)	71, 540
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	103, 118
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	3 cut(s)	160, 200, 526
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	2 cut(s)	8, 280
MalI	GATC	2 cut(s)	105, 120
MboI	GATC	2 cut(s)	103, 118
MboII	GAAGA	6 cut(s)	76, 92, 113, 226, 238, 590
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	549
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	135, 309, 373, 615, 642
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	117, 180, 346, 400, 423, 446, 520, 523
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	336, 480, 646
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	223, 320
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	103, 118
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	8, 280
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	368, 581
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	77, 212
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	3 cut(s)	131, 275, 457
RsaNI	GTAC	3 cut(s)	130, 274, 456
SaqAI	TTAA	3 cut(s)	336, 480, 646
SatI	GCNGC	2 cut(s)	76, 211
Sau3AI	GATC	2 cut(s)	103, 118
ScrFI	CCNGG	2 cut(s)	223, 320
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	9 cut(s)	218, 233, 275, 457, 526, 546, 556, 589, 624
SfaNI	GCATC	3 cut(s)	160, 200, 526
SfuI	TTCGAA	1 cut(s)	124
Sse9I	AATT	5 cut(s)	135, 309, 373, 615, 642
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	221, 318
StyI	CCWWGG	2 cut(s)	468, 550
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	111, 124, 239
TasI	AATT	5 cut(s)	135, 309, 373, 615, 642
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	368, 581
Tru1I	TTAA	3 cut(s)	336, 480, 646
Tru9I	TTAA	3 cut(s)	336, 480, 646
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	8, 280
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	2 cut(s)	8, 280
TspRI	CASTG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	309, 615
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.