Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Reverse (-)

3605170 .. 3605683

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04171.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGATACCATTAGTAGTAAGCACAGCATTGCGAAAAGATGGAAGAAACTAAGCGGCGAAAACAACTGGGAAGGCCTATTGGATCCCCTCGACATAGATCTCCGAAAGTACATAATTCACTACGGTGAAATGGCTCAAGCTACATATGATGCCTTCAACACAGAGAGGGCATCAAAGTTTGCAGGAAGCAGCAGGTATGCTAGGAAGAGCTTCTTCTCGAGAGTTGGTTTAGAGAAGGGCAATGCATTTAGGTACAATGTGACCAAGTTTGTGTATGCAACTTCACAAATTCAAGTCCCGGAAGCATTTATCGTCAAGAGGGATATTGTGATTGCTTGGAGAGGTACTGTTAGATCCTTGGAGTGGGTTAATGACTTGCAGTTCAATATGGTTTCTGCTTCAAATATACTAGGTCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

9.52

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	3 cut(s)	77, 90, 348
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	3 cut(s)	110, 254, 346
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	157, 293, 385, 402
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	140, 210
AluI	AGCT	2 cut(s)	140, 210
AlwI	GGATC	3 cut(s)	77, 90, 348
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	299
BfaI	CTAG	2 cut(s)	201, 410
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	55, 190
BlsI	GCNGC	2 cut(s)	56, 191
Bme1390I	CCNGG	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	139, 179
BmuI	ACTGGG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	2 cut(s)	27, 247
BseDI	CCNNGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	27, 247
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	82, 97, 353
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	77, 90, 348
BspQI	GCTCTTC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	27, 247
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	82, 97, 353
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	125, 349
Bst6I	CTCTTC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	85, 100, 356
BstMBI	GATC	3 cut(s)	82, 97, 353
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	3 cut(s)	82, 97, 353
BstYI	RGATCY	3 cut(s)	82, 97, 353
BsuRI	GGCC	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	109, 253, 345
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	4 cut(s)	75, 134, 140, 210
CviKI_1	RGCY	4 cut(s)	75, 134, 140, 210
CviQI	GTAC	3 cut(s)	109, 253, 345
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	84, 99, 355
DpnII	GATC	3 cut(s)	82, 97, 353
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	419
FaiI	YATR	9 cut(s)	95, 113, 145, 147, 198, 276, 389, 407, 417
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	55, 190
Fsp4HI	GCNGC	2 cut(s)	55, 190
FspBI	CTAG	2 cut(s)	201, 410
GluI	GCNGC	2 cut(s)	55, 190
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	419
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	4 cut(s)	217, 219, 316, 416
HpyAV	CCTTC	3 cut(s)	65, 163, 229
HpyCH4III	ACNGT	2 cut(s)	125, 349
HpyCH4V	TGCA	4 cut(s)	182, 245, 278, 379
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	419
Kzo9I	GATC	3 cut(s)	82, 97, 353
LguI	GCTCTTC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	52, 168, 178, 312
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	139, 179
MaeI	CTAG	2 cut(s)	201, 410
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	84, 99, 355
MboI	GATC	3 cut(s)	82, 97, 353
MboII	GAAGA	3 cut(s)	55, 205, 217
MflI	RGATCY	3 cut(s)	82, 97, 353
MluCI	AATT	2 cut(s)	114, 288
MnlI	CCTC	4 cut(s)	98, 159, 312, 335
Mph1103I	ATGCAT	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	299
NciI	CCSGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	3 cut(s)	82, 97, 353
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	217
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	56, 191
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	3 cut(s)	82, 97, 353
RsaI	GTAC	3 cut(s)	110, 254, 346
RsaNI	GTAC	3 cut(s)	109, 253, 345
RseI	CAYNNNNRTG	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	55, 190
Sau3AI	GATC	3 cut(s)	82, 97, 353
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	6 cut(s)	142, 197, 212, 254, 346, 415
SfaNI	GCATC	2 cut(s)	139, 179
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	135, 217
SmoI	CTYRAG	2 cut(s)	135, 217
Sse9I	AATT	2 cut(s)	114, 288
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	201, 410
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	125, 349
TaqI	TCGA	2 cut(s)	90, 218
TasI	AATT	2 cut(s)	114, 288
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	288
XhoI	CTCGAG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	201, 410
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.