Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Forward (+)

28890856 .. 28891854

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTTGGAGTGAAGAAAAAGATGGATAGCAGTCGTAGCATAGCCAAAAAATGGAAGCACCTAAGCGGCGAACACAACTGGGAGGGCCTATTGGTTCCTCTAGACATTGATCTCCGTCGATACATAATTCACTACGGAGAAATGGCTCAAGCTACTTATGATGCCTTCAACACAGAGAAGACATCAAAGTATGCAGGAAGCAGCAGATATGCCAGAAAGAACTTCTTCTCTAAAGTTGGTTTAGAGAAAGCAAACCCTTTTAAGTATAATGTGACCAAGTTTGTGTATGCGACGTCGCAGATTCAAGTCCCTGAGGCCTTCCTGATTAAGTCTTTGTCAAGGGAGTCTTGGTGCAAGGAATCAAACTGGATGGCGTATGTTGCTGTGGCGACAGATGAAGGGAAGGCTGCATTGGGCAGGAGAGACATTGTGATTGCTTGGAGAGGTACTGTGCAGTCCTTGGAGTGGGTTAATGACTTGCAATTTAATTTGGTTTCTGCGTCAAACATACTTAGCGAGGAAGGTGATCCAAAGGTGCACCAAGGTTGGTACTCCATCTATACTTCAGATGATTCACATTCGCCTTTCAACAAAACTAGTGCCAGACACCAGGTCATTGAAGAAGTTAGGAGACTAGTAGAGCAATACAAGGATGAGGAAATTAGTATCACCATAACAGGGCACAGTTTGGGTGCAGCAATTGCCACGCTAAGTGCAATTGACATTGTTGCCAATGGACTTAACAGGCCGAAGGACCTGCCAAACAAAGCCTGCCCAGTTACAGCCATTTTGTTCGCAAGCCCTCGAGTTGGTAACTCAAACTTTGAGAAGGTCTTCTCCGTACAACGATCTTCGAGCCTTACGCGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

291

Amino Acids

32.63

Weight (kDa)

9.22

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	144 - 282	6.3e-33	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccII	CGCG	1 cut(s)	865
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	549
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	448, 551, 843
AfiI	CCNNNNNNNGG	4 cut(s)	51, 465, 678, 809
AflIII	ACRYGT	1 cut(s)	863
AgsI	TTSAA	4 cut(s)	169, 305, 589, 620
AhdI	GACNNNNNGTC	1 cut(s)	611
AhlI	ACTAGT	2 cut(s)	596, 634
AjnI	CCWGG	1 cut(s)	609
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	417, 625
Alw44I	GTGCAC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	3 cut(s)	85, 315, 746
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	201, 407, 695
Asp700I	GAANNNNTTC	2 cut(s)	224, 833
AspS9I	GGNCC	2 cut(s)	85, 754
AsuHPI	GGTGA	2 cut(s)	536, 661
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	754
AxyI	CCTNAGG	1 cut(s)	312
BaeGI	GKGCMC	2 cut(s)	540, 684
BbsI	GAAGAC	2 cut(s)	185, 826
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	213, 394, 707
BccI	CCATC	3 cut(s)	16, 364, 563
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	417, 625
BcuI	ACTAGT	2 cut(s)	596, 634
BfaI	CTAG	3 cut(s)	101, 597, 635
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	4 cut(s)	67, 202, 408, 696
BlsI	GCNGC	4 cut(s)	68, 203, 409, 697
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	754
BmeRI	GACNNNNNGTC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	85, 754
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	2 cut(s)	88, 770
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	2 cut(s)	88, 770
BpiI	GAAGAC	2 cut(s)	185, 826
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	459, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 465, 678, 809
Bse1I	ACTGG	3 cut(s)	83, 371, 776
Bse21I	CCTNAGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	459, 541
BseGI	GGATG	2 cut(s)	375, 658
BseLI	CCNNNNNNNGG	4 cut(s)	51, 465, 678, 809
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	83, 371, 776
BseSI	GKGCMC	2 cut(s)	540, 684
BseXI	GCAGC	3 cut(s)	213, 394, 707
BsgI	GTGCAG	2 cut(s)	473, 714
Bsh1236I	CGCG	1 cut(s)	865
BshFI	GGCC	3 cut(s)	87, 317, 748
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	51, 465, 678, 809
BsmAI	GTCTC	2 cut(s)	417, 625
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	87, 317, 748
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	540, 684
Bsp143I	GATC	3 cut(s)	109, 526, 848
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	3 cut(s)	87, 317, 748
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	83, 371, 776
BssECI	CCNNGG	2 cut(s)	459, 541
BssMI	GATC	3 cut(s)	109, 526, 848
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	2 cut(s)	459, 541
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	2 cut(s)	451, 686
BstACI	GRCGYC	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	772, 799
BstDEI	CTNAG	4 cut(s)	62, 312, 512, 710
BstF5I	GGATG	2 cut(s)	375, 658
BstFNI	CGCG	1 cut(s)	865
BstKTI	GATC	3 cut(s)	112, 529, 851
BstMAI	GTCTC	2 cut(s)	417, 625
BstMBI	GATC	3 cut(s)	109, 526, 848
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 380, 701
BstNI	CCWGG	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	609
BstSLI	GKGCMC	2 cut(s)	540, 684
BstUI	CGCG	1 cut(s)	865
BstV1I	GCAGC	3 cut(s)	213, 394, 707
BstV2I	GAAGAC	2 cut(s)	185, 826
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	87, 317, 748
BtsCI	GGATG	2 cut(s)	375, 658
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	772, 799
Cfr13I	GGNCC	2 cut(s)	85, 754
CseI	GACGC	1 cut(s)	489
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	447, 550, 842
CviQI	GTAC	3 cut(s)	447, 550, 842
DdeI	CTNAG	4 cut(s)	62, 312, 512, 710
DpnI	GATC	3 cut(s)	111, 528, 850
DpnII	GATC	3 cut(s)	109, 526, 848
DriI	GACNNNNNGTC	1 cut(s)	611
Eam1105I	GACNNNNNGTC	1 cut(s)	611
Eco130I	CCWWGG	2 cut(s)	459, 541
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	804
EcoO109I	RGGNCCY	2 cut(s)	85, 754
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	459, 541
ErhI	CCWWGG	2 cut(s)	459, 541
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 331, 363
FaqI	GGGAC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	67, 202, 408, 696
FokI	GGATG	2 cut(s)	382, 665
Fsp4HI	GCNGC	4 cut(s)	67, 202, 408, 696
FspBI	CTAG	3 cut(s)	101, 597, 635
GluI	GCNGC	4 cut(s)	67, 202, 408, 696
HaeIII	GGCC	3 cut(s)	87, 317, 748
HgaI	GACGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	301, 344, 359, 572
HphI	GGTGA	2 cut(s)	536, 661
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	2 cut(s)	101, 322
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	3 cut(s)	120, 295, 298
HpyAV	CCTTC	7 cut(s)	175, 328, 392, 397, 515, 745, 823
HpyCH4III	ACNGT	2 cut(s)	451, 686
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	8 cut(s)	194, 354, 410, 454, 481, 538, 695, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 380, 701
HpyF3I	CTNAG	4 cut(s)	62, 312, 512, 710
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	293
Kzo9I	GATC	3 cut(s)	109, 526, 848
Lsp1109I	GCAGC	3 cut(s)	213, 394, 707
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	3 cut(s)	101, 597, 635
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	271, 778, 812
MalI	GATC	3 cut(s)	111, 528, 850
MboI	GATC	3 cut(s)	109, 526, 848
MboII	GAAGA	6 cut(s)	25, 190, 217, 632, 826, 843
MfeI	CAATTG	2 cut(s)	699, 717
MhlI	GDGCHC	2 cut(s)	540, 684
MluCI	AATT	6 cut(s)	126, 482, 487, 660, 699, 717
MluI	ACGCGT	1 cut(s)	863
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	76, 108, 307, 437, 511, 649, 813
MroXI	GAANNNNTTC	2 cut(s)	224, 833
MseI	TTAA	5 cut(s)	261, 327, 471, 486, 741
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	2 cut(s)	699, 717
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	865
MwoI	GCNNNNNNNGC	3 cut(s)	36, 380, 701
NdeII	GATC	3 cut(s)	109, 526, 848
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	804
PceI	AGGCCT	1 cut(s)	317
PdmI	GAANNNNTTC	2 cut(s)	224, 833
PfeI	GAWTC	3 cut(s)	301, 359, 572
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	68, 203, 409, 697
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	85, 754
PspPPI	RGGWCCY	1 cut(s)	754
PspXI	VCTCGAGB	1 cut(s)	804
RsaI	GTAC	3 cut(s)	448, 551, 843
RsaNI	GTAC	3 cut(s)	447, 550, 842
SaqAI	TTAA	5 cut(s)	261, 327, 471, 486, 741
SatI	GCNGC	4 cut(s)	67, 202, 408, 696
Sau3AI	GATC	3 cut(s)	109, 526, 848
Sau96I	GGNCC	2 cut(s)	85, 754
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	540, 684
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	754
SlaI	CTCGAG	1 cut(s)	804
SmlI	CTYRAG	2 cut(s)	147, 804
SmoI	CTYRAG	2 cut(s)	147, 804
SpeI	ACTAGT	2 cut(s)	596, 634
Sse9I	AATT	6 cut(s)	126, 482, 487, 660, 699, 717
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	3 cut(s)	101, 597, 635
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	2 cut(s)	459, 541
TaaI	ACNGT	2 cut(s)	451, 686
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	118, 805, 854
TasI	AATT	6 cut(s)	126, 482, 487, 660, 699, 717
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	301, 359, 572
Tru1I	TTAA	5 cut(s)	261, 327, 471, 486, 741
Tru9I	TTAA	5 cut(s)	261, 327, 471, 486, 741
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	201, 407, 695
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	3 cut(s)	104, 150, 829
Van91I	CCANNNNNTGG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	754
XbaI	TCTAGA	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	804
XmnI	GAANNNNTTC	2 cut(s)	224, 833
XspI	CTAG	3 cut(s)	101, 597, 635
ZraI	GACGTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.