Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025892.1

Orthogroup ID

OG0009090

Physical Location & Seq

Genomic Coordinates Reverse (-)

2714 .. 3966

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025892.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtttggtcacaagaaaaagatggatagcattattggcaagcacagcattgtgaaaagatggaagaaactaagcggcgaagacaactgggaaggcatgttggatcctctcgacattgatcttcgaaagtacataattcactatggcgaaatggctcaatctacatatgatgctttcaacacagagagggcatcaaagtttgcaggaagcagcaggtatgccaggaagaccttcttctcgaaagtttgtttagagaagggcaatgcatttaggtacaaagtgaccaagtttgtgtatgcaacttcacaaattcaagtcccggaagcatttatcgttaagtctttgtcaagggaggcttggagcaaagaatcaaattggatggggtatgttgctgtggccacagatgaggggaaggctgtgttgggcaggagggacattgtgattgcttggagaggtactgttcagtccttggagtgggttaatgatttgcagttcaatatggtttctgcttcaaaaatactaggtgaggaggctgatgctaaggtgcaccaaggttggcactccatctatacttccgaagattcacgttcgcctttcaacaaaaccagtgccagaattcaggttcttgctgaggtgagcagactagtagagcaatacaaggatgaggaaatcagcataaccataacagggcacagtttaggagcagcaattgccacactaagtgcaattgacatagttgccaacggtatcaacaaaccgaaagaccagacaacaaacaaactctcatcatgtccagtaacagcctttgtctttgcttgccctcgagtcggagactcaaacttcaagaaagtcttctctagctacaaaaacctccgagtcctgcgagttcgcaatgcactcgatattgtccccaattatccgtttctagtaggctattccgaggtgggagaagagctgggaatcgacactagaaagtcgagctacttgaagagccctggaagcgtggcgagttggcataacatggaggggcatttgcatggagttgcaggaactcaagggagtaaaggagggttcaagttggaagtgaagcgcgacatagcattggttaacaaaagcaatgatgctctcaaggaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

379

Amino Acids

42.36

Weight (kDa)

9.25

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18550 AT4G18550 AT4G18550
fragaria_vesca	FvH4_3g08010 FvH4_4g04171
malus_domestica	MD10G1282800.v1.1
prunus_persica	Prupe.4G059100_v2.0.a1
pyrus_communis	pycom05g28060 pycom05g28090 pycom10g23590
rosa_chinensis	RchiOBHm_Chr5g0010301
rosa_laevigata	RLG00000031735
rosa_multiflora	Rmu_co8415181.1_g000001 Rmu_sc0025892.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065950
rosa_rugosa	Rorug04G0450000 Rorug04G0450100
rosa_samantha	Rh5AG081100 Rh5BG076000 Rh5CG089300 Rh5DG076700
rosa_wichuraiana	Rw5G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AccII	CGCG	1 cut(s)	1092
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	98, 111
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	309, 615
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	131, 275, 457
AfiI	CCNNNNNNNGG	3 cut(s)	474, 687, 827
AgsI	TTSAA	8 cut(s)	178, 314, 496, 513, 598, 844, 988, 1075
AhlI	ACTAGT	1 cut(s)	643
AjnI	CCWGG	2 cut(s)	221, 994
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	3 cut(s)	861, 955, 981
AluI	AGCT	3 cut(s)	861, 955, 981
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	825
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	98, 111
Ama87I	CYCGRG	1 cut(s)	822
AoxI	GGCC	1 cut(s)	396
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	210, 704
ApoI	RAATTY	2 cut(s)	309, 615
Asp700I	GAANNNNTTC	2 cut(s)	230, 851
AspLEI	GCGC	1 cut(s)	1092
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	536, 646
AsuII	TTCGAA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	822
BaeGI	GKGCMC	2 cut(s)	549, 693
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	995
BbsI	GAAGAC	3 cut(s)	87, 233, 844
Bbv12I	GWGCWC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	222, 716
BccI	CCATC	4 cut(s)	16, 54, 373, 572
BcgI	CGANNNNNNTGC	2 cut(s)	880, 914
BciT130I	CCWGG	2 cut(s)	223, 996
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	825
BcuI	ACTAGT	1 cut(s)	643
BfaI	CTAG	5 cut(s)	521, 644, 858, 926, 969
BfuAI	ACCTGC	1 cut(s)	204
BisI	GCNGC	3 cut(s)	76, 211, 705
BlsI	GCNGC	3 cut(s)	77, 212, 706
Bme1390I	CCNGG	3 cut(s)	223, 320, 996
BmeT110I	CYCGRG	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	3 cut(s)	223, 320, 996
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	4 cut(s)	160, 200, 526, 1111
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	3 cut(s)	87, 233, 844
Bpu10I	CCTNAGC	2 cut(s)	540, 630
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	1038, 1112
BpuMI	CCSGG	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	468, 550, 939, 994
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 687, 827
Bse1I	ACTGG	3 cut(s)	92, 606, 794
Bse3DI	GCAATG	3 cut(s)	268, 898, 1123
BseBI	CCWGG	2 cut(s)	223, 996
BseDI	CCNNGG	4 cut(s)	468, 550, 939, 994
BseGI	GGATG	2 cut(s)	384, 667
BseLI	CCNNNNNNNGG	3 cut(s)	474, 687, 827
BseMI	GCAATG	3 cut(s)	268, 898, 1123
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	3 cut(s)	92, 606, 794
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	2 cut(s)	549, 693
BseXI	GCAGC	2 cut(s)	222, 716
BseYI	CCCAGC	1 cut(s)	955
Bsh1236I	CGCG	1 cut(s)	1092
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	822
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	3 cut(s)	302, 446, 893
BslI	CCNNNNNNNGG	3 cut(s)	474, 687, 827
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	3 cut(s)	302, 446, 893
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	549, 693, 995
Bsp143I	GATC	2 cut(s)	103, 118
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	1092
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	98, 111
BspQI	GCTCTTC	2 cut(s)	945, 983
BspT104I	TTCGAA	1 cut(s)	124
BsrDI	GCAATG	3 cut(s)	268, 898, 1123
BsrI	ACTGG	3 cut(s)	92, 606, 794
BssECI	CCNNGG	4 cut(s)	468, 550, 939, 994
BssMI	GATC	2 cut(s)	103, 118
BssT1I	CCWWGG	2 cut(s)	468, 550
Bst2UI	CCWGG	2 cut(s)	223, 996
Bst4CI	ACNGT	3 cut(s)	460, 695, 746
Bst6I	CTCTTC	2 cut(s)	945, 983
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	41, 817
BstDEI	CTNAG	4 cut(s)	71, 540, 630, 719
BstF5I	GGATG	2 cut(s)	384, 667
BstFNI	CGCG	1 cut(s)	1092
BstHHI	GCGC	1 cut(s)	1092
BstKTI	GATC	2 cut(s)	106, 121
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	2 cut(s)	103, 118
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 710, 999
BstNI	CCWGG	2 cut(s)	223, 996
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	3 cut(s)	221, 318, 994
BstSLI	GKGCMC	2 cut(s)	549, 693
BstUI	CGCG	1 cut(s)	1092
BstV1I	GCAGC	2 cut(s)	222, 716
BstV2I	GAAGAC	3 cut(s)	87, 233, 844
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	384, 667
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	41, 817
CfoI	GCGC	1 cut(s)	1092
Csp6I	GTAC	3 cut(s)	130, 274, 456
CviAII	CATG	4 cut(s)	97, 789, 1021, 1037
CviQI	GTAC	3 cut(s)	130, 274, 456
DdeI	CTNAG	4 cut(s)	71, 540, 630, 719
DpnI	GATC	2 cut(s)	105, 120
DpnII	GATC	2 cut(s)	103, 118
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	945, 983
EarI	CTCTTC	2 cut(s)	945, 983
Eco130I	CCWWGG	2 cut(s)	468, 550
Eco24I	GRGCYC	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	822
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	221, 994
EcoT14I	CCWWGG	2 cut(s)	468, 550
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	995
ErhI	CCWWGG	2 cut(s)	468, 550
FaeI	CATG	4 cut(s)	100, 792, 1024, 1040
FalI	AAGNNNNNCTT	6 cut(s)	218, 250, 340, 372, 836, 868
FaqI	GGGAC	3 cut(s)	302, 446, 893
FatI	CATG	4 cut(s)	96, 788, 1020, 1036
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	76, 211, 705
FokI	GGATG	2 cut(s)	391, 674
FriOI	GRGCYC	1 cut(s)	995
Fsp4HI	GCNGC	3 cut(s)	76, 211, 705
FspBI	CTAG	5 cut(s)	521, 644, 858, 926, 969
GlaI	GCGC	1 cut(s)	1091
GluI	GCNGC	3 cut(s)	76, 211, 705
GsaI	CCCAGC	1 cut(s)	959
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	1092
Hin1II	CATG	4 cut(s)	100, 792, 1024, 1040
Hin6I	GCGC	1 cut(s)	1090
HinP1I	GCGC	1 cut(s)	1090
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HinfI	GANTC	6 cut(s)	368, 581, 825, 833, 876, 960
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	536, 646
Hpy166II	GTNNAC	2 cut(s)	547, 1108
Hpy188I	TCNGA	4 cut(s)	577, 830, 875, 940
Hpy188III	TCNNGA	3 cut(s)	110, 238, 844
Hpy8I	GTNNAC	2 cut(s)	547, 1108
HpyAV	CCTTC	4 cut(s)	86, 241, 250, 406
HpyCH4III	ACNGT	3 cut(s)	460, 695, 746
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	9 cut(s)	203, 266, 299, 490, 547, 725, 896, 1036, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 710, 999
HpyF3I	CTNAG	4 cut(s)	71, 540, 630, 719
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	4 cut(s)	100, 792, 1024, 1040
HspAI	GCGC	1 cut(s)	1090
KspAI	GTTAAC	1 cut(s)	1108
Kzo9I	GATC	2 cut(s)	103, 118
LguI	GCTCTTC	2 cut(s)	945, 983
LmnI	GCTCC	2 cut(s)	360, 701
Lsp1109I	GCAGC	2 cut(s)	222, 716
LweI	GCATC	4 cut(s)	160, 200, 526, 1111
MaeI	CTAG	5 cut(s)	521, 644, 858, 926, 969
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	8, 280, 796
MalI	GATC	2 cut(s)	105, 120
MboI	GATC	2 cut(s)	103, 118
MboII	GAAGA	9 cut(s)	76, 92, 113, 226, 238, 590, 844, 962, 1000
MfeI	CAATTG	2 cut(s)	708, 726
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	3 cut(s)	549, 693, 995
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	7 cut(s)	135, 309, 373, 615, 708, 726, 913
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	3 cut(s)	827, 834, 885
MmeI	TCCRAC	3 cut(s)	81, 808, 1059
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	230, 851
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	336, 480, 1107
MslI	CAYNNNNRTG	1 cut(s)	1035
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	3 cut(s)	223, 320, 996
MunI	CAATTG	2 cut(s)	708, 726
MvaI	CCWGG	2 cut(s)	223, 996
MvnI	CGCG	1 cut(s)	1092
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 710, 999
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	103, 118
NlaIII	CATG	4 cut(s)	100, 792, 1024, 1040
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	8, 280
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	822
PciSI	GCTCTTC	2 cut(s)	945, 983
PdmI	GAANNNNTTC	2 cut(s)	230, 851
PfeI	GAWTC	3 cut(s)	368, 581, 960
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	77, 212, 706
PleI	GAGTC	3 cut(s)	827, 833, 884
PpsI	GAGTC	3 cut(s)	827, 833, 884
Psp6I	CCWGG	2 cut(s)	221, 994
PspFI	CCCAGC	1 cut(s)	955
PspGI	CCWGG	2 cut(s)	221, 994
PspN4I	GGNNCC	1 cut(s)	105
PspXI	VCTCGAGB	1 cut(s)	822
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	3 cut(s)	131, 275, 457
RsaNI	GTAC	3 cut(s)	130, 274, 456
RseI	CAYNNNNRTG	1 cut(s)	1035
SapI	GCTCTTC	2 cut(s)	945, 983
SaqAI	TTAA	3 cut(s)	336, 480, 1107
SatI	GCNGC	3 cut(s)	76, 211, 705
Sau3AI	GATC	2 cut(s)	103, 118
SchI	GAGTC	3 cut(s)	827, 834, 885
ScrFI	CCNGG	3 cut(s)	223, 320, 996
SduI	GDGCHC	3 cut(s)	549, 693, 995
SfaNI	GCATC	4 cut(s)	160, 200, 526, 1111
Sfr274I	CTCGAG	1 cut(s)	822
SfuI	TTCGAA	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	3 cut(s)	822, 1053, 1127
SmoI	CTYRAG	3 cut(s)	822, 1053, 1127
SpeI	ACTAGT	1 cut(s)	643
Sse9I	AATT	7 cut(s)	135, 309, 373, 615, 708, 726, 913
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	5 cut(s)	521, 644, 858, 926, 969
StyD4I	CCNGG	3 cut(s)	221, 318, 994
StyI	CCWWGG	2 cut(s)	468, 550
TaaI	ACNGT	3 cut(s)	460, 695, 746
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	7 cut(s)	111, 124, 239, 823, 900, 963, 977
TasI	AATT	7 cut(s)	135, 309, 373, 615, 708, 726, 913
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	368, 581, 960
Tru1I	TTAA	3 cut(s)	336, 480, 1107
Tru9I	TTAA	3 cut(s)	336, 480, 1107
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	8, 280
TseI	GCWGC	2 cut(s)	210, 704
Tsp45I	GTSAC	2 cut(s)	8, 280
TspGWI	ACGGA	1 cut(s)	909
TspRI	CASTG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	309, 615
XceI	RCATGY	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	822
XmnI	GAANNNNTTC	2 cut(s)	230, 851
XspI	CTAG	5 cut(s)	521, 644, 858, 926, 969
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.