AT4G18650

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015490
Physical Location & Seq
Reverse (-)
10263969 .. 10265439
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18650.1

Sequence Viewer

Length: 699 bp
ATGAGCAAAATGAGAAACCTAGTAGAAGAAAAGTTCCTAGAGTTCTATGAGAGTTGGGTTATTCAACTTGAGCTATATCTTCATCAACTTTTAATTGCTCATAACAATAACACTATGAGTGAGACCGAGCTTCGACATTTGATCTCGAAGCTAACTACACATCACAAAGCTTATTATACAGCCAAATGGGCAGCCATAAGAGAAGATGTCTTAGCTTTTTTCGGATCAGTTTGGTTAAACCCGTTAGAGAATGCTTGCTCTTGGTTAACCGGATGGAAACCGTCGATGGTGTTTCGGATGGTTGATAGGCTGAGGAAGTCGAGAGTGGTGCTTGTGGAGGCTCAGGTGAAGAAATTGGAGGAGCTGAGAGTTAAGACCAAGTTCGATGAGCAAAAAATTGAGAGAGAGATGGAGCGGTATCAGGTGGCTATGGCTGATCGGAAAATGGTAGAGCTGGCGAGGCTTGGATGTCACGTCGGAGGAGAATCGGTGATGGTGGTGGAGGCAGCGGTGAGAGGATTATCGATGGGTCTTGAGAAAATGGTGAAGGCTGCGGATTGTGTGCGGCTGAAAACGCTTAAAGGTATATTAGACATTTTAACTCCACCGCAATGCGTTGAGTTTTTGGCAGCGGCGGCTACGTTTCAGGTTCAGTTACGTCGGTGGGGAAACCGAAGACATTATGTCACTCACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

232

Amino Acids

27.02

Weight (kDa)

9.35

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 27 - 101 7.7e-23 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18650
fragaria_vesca FvH4_3g07650
malus_domestica MD05G1073300.v1.1 MD05G1299100.v1.1 MD10G1044600.v1.1 MD14G1136000.v1.1
prunus_persica Prupe.4G062700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011031
rosa_laevigata RLG00000031804
rosa_multiflora Rmu_sc0003242.1_g000003
rosa_roxburghii Rroxscaffold_1G00065370
rosa_rugosa Rorug04G0454700
rosa_samantha Rh5BG081600 Rh5DG081400
rosa_wichuraiana Rw0G000130 Rw0G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 415
AciI CCGC 7 cut(s) 415, 509, 554, 565, 608, 632, 635
AclWI GGATC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 65
AhdI GACNNNNNGTC 1 cut(s) 683
AjiI CACGTC 1 cut(s) 475
AluBI AGCT 7 cut(s) 73, 130, 151, 170, 215, 364, 454
AluI AGCT 7 cut(s) 73, 130, 151, 170, 215, 364, 454
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 191, 506, 551, 629
AsuHPI GGTGA 4 cut(s) 358, 502, 523, 556
BbsI GAAGAC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 4 cut(s) 203, 518, 538, 641
BccI CCATC 6 cut(s) 267, 280, 292, 403, 487, 520
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 20, 38
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 7 cut(s) 192, 507, 552, 566, 630, 633, 636
BlsI GCNGC 7 cut(s) 193, 508, 553, 567, 631, 634, 637
BmeRI GACNNNNNGTC 1 cut(s) 683
BmgBI CACGTC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 682
Bpu10I CCTNAGC 2 cut(s) 311, 342
BpuEI CTTGAG 2 cut(s) 89, 554
Bsa29I ATCGAT 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bse3DI GCAATG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 524
BseGI GGATG 3 cut(s) 278, 303, 473
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 3 cut(s) 302, 356, 356
BseRI GAGGAG 2 cut(s) 374, 495
BseXI GCAGC 4 cut(s) 203, 518, 538, 641
BshVI ATCGAT 1 cut(s) 524
BsiSI CCGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 141, 224, 436
BspACI CCGC 7 cut(s) 415, 509, 554, 565, 608, 632, 635
BspCNI CTCAG 3 cut(s) 303, 355, 357
BspDI ATCGAT 1 cut(s) 524
BspPI GGATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 617
BssMI GATC 3 cut(s) 141, 224, 436
Bst4CI ACNGT 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 256, 456
BstDEI CTNAG 4 cut(s) 211, 311, 342, 365
BstF5I GGATG 3 cut(s) 278, 303, 473
BstKTI GATC 3 cut(s) 144, 227, 439
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 141, 224, 436
BstMWI GCNNNNNNNGC 4 cut(s) 188, 460, 574, 635
BstV1I GCAGC 4 cut(s) 203, 518, 538, 641
BstV2I GAAGAC 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 524
BsuTUI ATCGAT 1 cut(s) 524
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 3 cut(s) 278, 303, 473
Cac8I GCNNGC 2 cut(s) 256, 456
ClaI ATCGAT 1 cut(s) 524
DdeI CTNAG 4 cut(s) 211, 311, 342, 365
DpnI GATC 3 cut(s) 143, 226, 438
DpnII GATC 3 cut(s) 141, 224, 436
DriI GACNNNNNGTC 1 cut(s) 683
Eam1105I GACNNNNNGTC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 116
FaiI YATR 9 cut(s) 48, 76, 102, 116, 177, 197, 431, 587, 684
Fnu4HI GCNGC 7 cut(s) 192, 507, 552, 566, 630, 633, 636
FokI GGATG 3 cut(s) 285, 310, 480
Fsp4HI GCNGC 7 cut(s) 192, 507, 552, 566, 630, 633, 636
FspBI CTAG 2 cut(s) 20, 38
GluI GCNGC 7 cut(s) 192, 507, 552, 566, 630, 633, 636
HapII CCGG 1 cut(s) 270
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 1 cut(s) 485
HpaI GTTAAC 1 cut(s) 267
HpaII CCGG 1 cut(s) 270
HphI GGTGA 4 cut(s) 358, 502, 523, 556
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 4 cut(s) 224, 297, 441, 479
Hpy188III TCNNGA 4 cut(s) 145, 321, 533, 696
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 3 cut(s) 286, 479, 663
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 3 cut(s) 474, 641, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 460, 574, 635
HpyF3I CTNAG 4 cut(s) 211, 311, 342, 365
HpySE526I ACGT 3 cut(s) 474, 641, 658
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 141, 224, 436
LmnI GCTCC 2 cut(s) 361, 412
LpnPI CCDG 5 cut(s) 283, 329, 407, 440, 632
Lsp1109I GCAGC 4 cut(s) 203, 518, 538, 641
MaeI CTAG 2 cut(s) 20, 38
MaeII ACGT 3 cut(s) 474, 641, 658
MaeIII GTNAC 3 cut(s) 470, 654, 685
MalI GATC 3 cut(s) 143, 226, 438
MbiI CCGCTC 1 cut(s) 415
MboI GATC 3 cut(s) 141, 224, 436
MboII GAAGA 5 cut(s) 38, 71, 215, 361, 687
MluCI AATT 3 cut(s) 93, 353, 396
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 7 cut(s) 306, 331, 352, 453, 473, 496, 509
MseI TTAA 6 cut(s) 92, 236, 266, 372, 579, 599
MslI CAYNNNNRTG 1 cut(s) 610
MspA1I CMGCKG 2 cut(s) 509, 632
MspI CCGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 188, 460, 574, 635
NdeII GATC 3 cut(s) 141, 224, 436
NmuCI GTSAC 2 cut(s) 470, 685
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 7 cut(s) 193, 508, 553, 567, 631, 634, 637
RseI CAYNNNNRTG 1 cut(s) 610
SaqAI TTAA 6 cut(s) 92, 236, 266, 372, 579, 599
SatI GCNGC 7 cut(s) 192, 507, 552, 566, 630, 633, 636
Sau3AI GATC 3 cut(s) 141, 224, 436
SmiMI CAYNNNNRTG 1 cut(s) 610
SmlI CTYRAG 2 cut(s) 68, 533
SmoI CTYRAG 2 cut(s) 68, 533
Sse9I AATT 3 cut(s) 93, 353, 396
SsiI CCGC 7 cut(s) 415, 509, 554, 565, 608, 632, 635
SspMI CTAG 2 cut(s) 20, 38
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 3 cut(s) 477, 644, 661
TaqI TCGA 6 cut(s) 133, 146, 284, 320, 384, 524
TaqII GACCGA 1 cut(s) 140
TasI AATT 3 cut(s) 93, 353, 396
TauI GCSGC 3 cut(s) 568, 635, 638
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 6 cut(s) 92, 236, 266, 372, 579, 599
Tru9I TTAA 6 cut(s) 92, 236, 266, 372, 579, 599
TseFI GTSAC 2 cut(s) 470, 685
TseI GCWGC 4 cut(s) 191, 506, 551, 629
Tsp45I GTSAC 2 cut(s) 470, 685
TspDTI ATGAA 1 cut(s) 71
XspI CTAG 2 cut(s) 20, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.