MD05G1073300.v1.1

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015490
Physical Location & Seq
Forward (+)
15462869 .. 15463252
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1073300.v1.1.491

Sequence Viewer

Length: 384 bp
ATGATGTTCCAGCTCGTCGAGTTGCTGAAGACGAGGAGGCTGGTTTCCATATCGGAGGAGCAGGTGAGAAAGGTTGAGCAGCTGAGGTACAAGGAGGATAAGGTGGAGAGGGAAATGGTGAGGCAGCAGGTGGCGATGGCGAACATGAGGACGGTGGAATTGGCCCGGCTGGCGTCCCAGGAAAGGAACGGGGAAGCGGCGTCGGAGTTGGAAGGGCTGGTGAATGTGGCGATGAAGGTGATGTTGAGTGGGTTGGAGTGGGTGTTGAAGGAGGTGGATTGTGTGAGGCTCAAGACATTGAAGGGGTTGTTAGATTTGCTAAGACCATTGCAGAGTGTGAAGTTCTTGGCTGTTACTTGCATGGTGCAGATTAAGTTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

128

Amino Acids

14.7

Weight (kDa)

9.46

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18650
fragaria_vesca FvH4_3g07650
malus_domestica MD05G1073300.v1.1 MD05G1299100.v1.1 MD10G1044600.v1.1 MD14G1136000.v1.1
prunus_persica Prupe.4G062700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011031
rosa_laevigata RLG00000031804
rosa_multiflora Rmu_sc0003242.1_g000003
rosa_roxburghii Rroxscaffold_1G00065370
rosa_rugosa Rorug04G0454700
rosa_samantha Rh5BG081600 Rh5DG081400
rosa_wichuraiana Rw0G000130 Rw0G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 52, 118
Acc36I ACCTGC 2 cut(s) 52, 118
AciI CCGC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 2 cut(s) 173, 200
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 2 cut(s) 268, 301
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 13, 82
AluI AGCT 2 cut(s) 13, 82
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 79, 124
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 4 cut(s) 76, 130, 232, 250
BbsI GAAGAC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 91, 136
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 166
BfuAI ACCTGC 2 cut(s) 52, 118
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 80, 125, 198
BlsI GCNGC 3 cut(s) 81, 126, 199
Bme1390I CCNGG 2 cut(s) 166, 179
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 166, 179
BpiI GAAGAC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 173, 200
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 49, 71
BseXI GCAGC 2 cut(s) 91, 136
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 164
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 75
BspMI ACCTGC 2 cut(s) 52, 118
BsrDI GCAATG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 177
BssNI GRCGYC 2 cut(s) 173, 200
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 154
BstACI GRCGYC 2 cut(s) 173, 200
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 83, 320
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 164, 177
BstV1I GCAGC 2 cut(s) 91, 136
BstV2I GAAGAC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 2 cut(s) 149, 245
BveI ACCTGC 2 cut(s) 52, 118
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 2 cut(s) 162, 189
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 145, 361
CviJI RGCY 8 cut(s) 13, 40, 82, 164, 169, 217, 289, 350
CviKI_1 RGCY 8 cut(s) 13, 40, 82, 164, 169, 217, 289, 350
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 83, 320
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 148, 364
FaiI YATR 3 cut(s) 50, 146, 362
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 144, 360
Fnu4HI GCNGC 3 cut(s) 80, 125, 198
Fsp4HI GCNGC 3 cut(s) 80, 125, 198
GluI GCNGC 3 cut(s) 80, 125, 198
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 166
HgaI GACGC 2 cut(s) 162, 189
Hin1I GRCGYC 2 cut(s) 173, 200
Hin1II CATG 2 cut(s) 148, 364
HpaII CCGG 1 cut(s) 166
HphI GGTGA 4 cut(s) 76, 130, 232, 250
Hpy188I TCNGA 2 cut(s) 55, 205
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 2 cut(s) 20, 205
HpyAV CCTTC 4 cut(s) 206, 229, 262, 295
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 331, 360, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 83, 320
Hsp92I GRCGYC 2 cut(s) 173, 200
Hsp92II CATG 2 cut(s) 148, 364
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 9 cut(s) 23, 26, 47, 113, 155, 164, 179, 191, 203
Lsp1109I GCAGC 2 cut(s) 91, 136
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 1 cut(s) 40
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 3 cut(s) 183, 189, 234
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 166, 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 166
NlaIII CATG 2 cut(s) 148, 364
PaqCI CACCTGC 2 cut(s) 52, 118
PkrI GCNGC 3 cut(s) 81, 126, 199
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 80, 125, 198
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 166, 179
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 164, 177
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 79, 124
TspDTI ATGAA 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.