RLG00000031804

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015490
Physical Location & Seq
Reverse (-)
8363901 .. 8364611
711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031804

Sequence Viewer

Length: 711 bp
ATGAAAACCCAAGTTGAGGAGAGGTTCTCCGAGTTTTTTGAGAAGTGGGTTTGTCAGCTTGAGCAAGTCCAACACCAGCTGCTCAAGTTGTCCCAGGAGAAGATACTGCTTCATAATGAGGCAGAGCTCCAAGCTTTGGTGTCCAAGGTCACAAATTTGCACAAAGAATACTACACTGCAAAATGGGCTGCTGCTCATCAAGATGTGCTTGCCTTCTTCTGCCCTGTCTGGTCCAGCCCTTTGGAGAATGCCTTTTCATGGCTGACCGGTTGGAAGCCCTCAATGTTGTTCCAGCTACTGCGAAAAGCTCGGCTGCGGAACGTGTCCGAGCAGCAGCTGAGGAAGATAGAGGAGCTGAGGCTGAAGATTCGGTACGAGGAGGAGAGGGTGGAGAGGGAGATGGAGAGGCAGCAGGTGGCCTTGGCGGACCGGAAGACGGTAGAGCTGGCCCGGCTGGCCACCCGAGTCAGGAACGGCGGTGGGGCGCTGGCCGAGGTGGAAGGGCTGGTCGATATGGCAATGAAGGTGATGCTGAGTGGGTTGGAGAGAGTCATGAAGGCTGCAGATTGTGTGAGGCTGAAGGCATTGAAGGGTGTGTTGGATTTGCTGAGTCCATTGCAGTGTGTGGAGTTTTTGGCTGCTACTGGCATGGTTCAGATTAGGCTGAGGCAATGGGGAAGGAAAAGGAGCAACCTAATTGACCTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

237

Amino Acids

27.41

Weight (kDa)

9.3

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 29 - 101 1.3e-24 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18650
fragaria_vesca FvH4_3g07650
malus_domestica MD05G1073300.v1.1 MD05G1299100.v1.1 MD10G1044600.v1.1 MD14G1136000.v1.1
prunus_persica Prupe.4G062700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011031
rosa_laevigata RLG00000031804
rosa_multiflora Rmu_sc0003242.1_g000003
rosa_roxburghii Rroxscaffold_1G00065370
rosa_rugosa Rorug04G0454700
rosa_samantha Rh5BG081600 Rh5DG081400
rosa_wichuraiana Rw0G000130 Rw0G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 3 cut(s) 316, 425, 477
AcoI YGGCCR 2 cut(s) 456, 489
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 383, 599
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 5 cut(s) 16, 136, 258, 436, 468
AflIII ACRYGT 1 cut(s) 321
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 1 cut(s) 589
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
Alw21I GWGCWC 1 cut(s) 129
AlwNI CAGNNNCTG 2 cut(s) 298, 337
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 4 cut(s) 417, 447, 456, 489
ApeKI GCWGC 9 cut(s) 79, 188, 191, 313, 331, 334, 409, 560, 638
ApoI RAATTY 1 cut(s) 154
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 231, 427, 448
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 2 cut(s) 231, 427
BalI TGGCCA 1 cut(s) 458
BanII GRGCYC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 3 cut(s) 338, 356, 665
BbvI GCAGC 9 cut(s) 66, 175, 178, 300, 343, 346, 421, 547, 625
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 451
BfaI CTAG 1 cut(s) 709
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 9 cut(s) 80, 189, 192, 314, 332, 335, 410, 561, 639
BlsI GCNGC 9 cut(s) 81, 190, 193, 315, 333, 336, 411, 562, 640
Bme1390I CCNGG 2 cut(s) 95, 451
Bme18I GGWCC 2 cut(s) 231, 427
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 3 cut(s) 231, 427, 448
BmrFI CCNGG 2 cut(s) 95, 451
BmsI GCATC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu10I CCTNAGC 4 cut(s) 338, 356, 665, 704
BpuEI CTTGAG 2 cut(s) 68, 80
BpuMI CCSGG 1 cut(s) 451
BsaJI CCNNGG 4 cut(s) 93, 144, 420, 492
BsaWI WCCGGW 2 cut(s) 266, 429
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 136, 258, 436, 468
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 3 cut(s) 525, 614, 677
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 4 cut(s) 93, 144, 420, 492
BseLI CCNNNNNNNGG 5 cut(s) 16, 136, 258, 436, 468
BseMI GCAATG 3 cut(s) 525, 614, 677
BseMII CTCAG 5 cut(s) 329, 347, 524, 599, 656
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 4 cut(s) 32, 365, 392, 395
BseXI GCAGC 9 cut(s) 66, 175, 178, 300, 343, 346, 421, 547, 625
BshFI GGCC 4 cut(s) 419, 449, 458, 491
BshTI ACCGGT 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 3 cut(s) 267, 430, 451
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 5 cut(s) 16, 136, 258, 436, 468
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 4 cut(s) 419, 449, 458, 491
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 129
BspACI CCGC 3 cut(s) 316, 425, 477
BspANI GGCC 4 cut(s) 419, 449, 458, 491
BspCNI CTCAG 5 cut(s) 330, 348, 525, 600, 657
BspHI TCATGA 1 cut(s) 552
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 525, 614, 677
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 93, 144, 420, 492
BssT1I CCWWGG 2 cut(s) 144, 420
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 210, 447, 456, 489
BstDEI CTNAG 6 cut(s) 338, 356, 533, 608, 665, 704
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstMWI GCNNNNNNNGC 3 cut(s) 185, 451, 455
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 93, 449
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 9 cut(s) 66, 175, 178, 300, 343, 346, 421, 547, 625
BstV2I GAAGAC 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 4 cut(s) 419, 449, 458, 491
BtsI GCAGTG 2 cut(s) 174, 626
BtsIMutI CAGTG 2 cut(s) 174, 626
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 210, 447, 456, 489
CaiI CAGNNNCTG 2 cut(s) 298, 337
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 231, 427, 448
CpoI CGGWCCG 1 cut(s) 427
Csp6I GTAC 1 cut(s) 373
CspAI ACCGGT 1 cut(s) 266
CspI CGGWCCG 1 cut(s) 427
CviAII CATG 3 cut(s) 258, 553, 649
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 6 cut(s) 338, 356, 533, 608, 665, 704
EaeI YGGCCR 2 cut(s) 456, 489
EciI GGCGGA 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 144, 420
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 231, 427
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 383, 599
Eco88I CYCGRG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 144, 420
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 144, 420
FaeI CATG 3 cut(s) 261, 556, 652
FaiI YATR 5 cut(s) 114, 259, 515, 554, 650
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 257, 552, 648
Fnu4HI GCNGC 9 cut(s) 80, 189, 192, 314, 332, 335, 410, 561, 639
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 9 cut(s) 80, 189, 192, 314, 332, 335, 410, 561, 639
FspBI CTAG 1 cut(s) 709
GlaI GCGC 1 cut(s) 486
GluI GCNGC 9 cut(s) 80, 189, 192, 314, 332, 335, 410, 561, 639
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 4 cut(s) 419, 449, 458, 491
HapII CCGG 3 cut(s) 267, 430, 451
HhaI GCGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 261, 556, 652
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 4 cut(s) 367, 465, 549, 610
HpaII CCGG 3 cut(s) 267, 430, 451
HphI GGTGA 1 cut(s) 538
Hpy188I TCNGA 3 cut(s) 31, 328, 657
Hpy188III TCNNGA 3 cut(s) 200, 469, 553
HpyAV CCTTC 7 cut(s) 223, 494, 517, 550, 574, 583, 672
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 160, 179, 563, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 451, 455
HpyF3I CTNAG 6 cut(s) 338, 356, 533, 608, 665, 704
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 3 cut(s) 261, 556, 652
HspAI GCGC 1 cut(s) 485
LmnI GCTCC 3 cut(s) 132, 352, 687
Lsp1109I GCAGC 9 cut(s) 66, 175, 178, 300, 343, 346, 421, 547, 625
LweI GCATC 1 cut(s) 519
MaeI CTAG 1 cut(s) 709
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 5 cut(s) 112, 208, 355, 376, 445
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 2 cut(s) 154, 696
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 3 cut(s) 474, 558, 619
MmeI TCCRAC 4 cut(s) 94, 251, 522, 579
Mox20I TGGCCA 1 cut(s) 458
MscI TGGCCA 1 cut(s) 458
MslI CAYNNNNRTG 2 cut(s) 201, 619
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 2 cut(s) 79, 337
MspI CCGG 3 cut(s) 267, 430, 451
MspR9I CCNGG 2 cut(s) 95, 451
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 185, 451, 455
NciI CCSGG 1 cut(s) 451
NlaIII CATG 3 cut(s) 261, 556, 652
NmeAIII GCCGAG 2 cut(s) 289, 517
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 1 cut(s) 552
PaqCI CACCTGC 1 cut(s) 403
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 9 cut(s) 81, 190, 193, 315, 333, 336, 411, 562, 640
PleI GAGTC 3 cut(s) 473, 557, 618
PpsI GAGTC 3 cut(s) 473, 557, 618
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 3 cut(s) 231, 427, 448
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 298, 337
PvuII CAGCTG 2 cut(s) 79, 337
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 2 cut(s) 201, 619
Rsr2I CGGWCCG 1 cut(s) 427
RsrII CGGWCCG 1 cut(s) 427
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 9 cut(s) 80, 189, 192, 314, 332, 335, 410, 561, 639
Sau96I GGNCC 3 cut(s) 231, 427, 448
SchI GAGTC 3 cut(s) 474, 558, 619
ScrFI CCNGG 2 cut(s) 95, 451
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 1 cut(s) 561
SfiI GGCCNNNNNGGCC 1 cut(s) 455
SinI GGWCC 2 cut(s) 231, 427
SmiMI CAYNNNNRTG 2 cut(s) 201, 619
SmlI CTYRAG 2 cut(s) 59, 83
SmoI CTYRAG 2 cut(s) 59, 83
Sse9I AATT 2 cut(s) 154, 696
SsiI CCGC 3 cut(s) 316, 425, 477
SspMI CTAG 1 cut(s) 709
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 93, 449
StyI CCWWGG 2 cut(s) 144, 420
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 510
TasI AATT 2 cut(s) 154, 696
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 2 cut(s) 181, 626
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 9 cut(s) 79, 188, 191, 313, 331, 334, 409, 560, 638
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 17, 101, 246, 536, 569
TspRI CASTG 2 cut(s) 181, 626
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 231, 427
XapI RAATTY 1 cut(s) 154
XspI CTAG 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.