FvH4_3g07650

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015490
Physical Location & Seq
Forward (+)
4501750 .. 4502469
720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07650.t1

Sequence Viewer

Length: 720 bp
ATGACAACCCAAGTTGAGGAGAGGTTCACTGAGTTTTTCGAGACGTGGGTTTGTCAGCTTGAGCAACTCCAACACCAGCTGCTCAAGTTGTCCCAGGAGAAGTCGACACTGCAGCCTCATAATGAGGCAGAGCTCCAAGCTTTGGTGTCGAGGGTCACAAACTTGCACAAAGAATACTACACTGCAAAATGGGCTGCTGCTCATCAAGACGTGCTAGCCTTCTTCTGCCCTGTCTGGTCCAGCCCTTTGGAGAATGCCTATTCATGGCTGACAGGTTGGAAGCCCTCAATGTTGTTCAAGCTAATGCGAAAGGCTCGGCTGCAGAACTTGTCCGAGCAGCAGCTGAGGAAGATCGAGGAACTGAGGCTGAAGATACGGTACGAGGAGGAGAGGGTGGAGAGGGAGATGGAGAGGCAGCAGGTGGCCATGGCGGACCGGAAGATGGTGGAGCTGGCGAGGCTGGCCACCCGGGTCAGGAACGGCGGCGGGGCGGTGGTTGAGGTCGAAGGGATGGTGGATATGGCAATGAAGGTGATACTGAATGGGTTGGAGAGAGTCATGAAGGCTGCAGATTGTGTGAGGCTCAAGGCATTGAAGGGTTTGTTGGATTTGCTGAGTCCATTGCAGTGTGTGGAGTTTTTGGCTGCTACTGGCATGGTTCAGATTAGGCTAAGTCAATGGGGAAGGAAAAGGAGCAACGTTCTGATTGACCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

240

Amino Acids

27.78

Weight (kDa)

8.87

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 32 - 103 2e-23 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18650
fragaria_vesca FvH4_3g07650
malus_domestica MD05G1073300.v1.1 MD05G1299100.v1.1 MD10G1044600.v1.1 MD14G1136000.v1.1
prunus_persica Prupe.4G062700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011031
rosa_laevigata RLG00000031804
rosa_multiflora Rmu_sc0003242.1_g000003
rosa_roxburghii Rroxscaffold_1G00065370
rosa_rugosa Rorug04G0454700
rosa_samantha Rh5BG081600 Rh5DG081400
rosa_wichuraiana Rw0G000130 Rw0G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 142
AccI GTMKAC 1 cut(s) 104
AciI CCGC 4 cut(s) 431, 483, 486, 491
AclI AACGTT 1 cut(s) 699
AcoI YGGCCR 2 cut(s) 423, 462
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 5 cut(s) 16, 142, 264, 442, 474
AgsI TTSAA 2 cut(s) 298, 595
AjiI CACGTC 2 cut(s) 45, 211
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 7 cut(s) 58, 79, 133, 140, 301, 343, 451
AluI AGCT 7 cut(s) 58, 79, 133, 140, 301, 343, 451
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 35
AlwNI CAGNNNCTG 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 2 cut(s) 423, 462
AspS9I GGNCC 2 cut(s) 237, 433
AsuC2I CCSGG 2 cut(s) 469, 470
AsuHPI GGTGA 1 cut(s) 544
AsuNHI GCTAGC 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 2 cut(s) 237, 433
BalI TGGCCA 2 cut(s) 425, 464
BanII GRGCYC 1 cut(s) 135
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 344
BccI CCATC 3 cut(s) 400, 436, 505
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 2 cut(s) 469, 470
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 3 cut(s) 110, 320, 567
BfuAI ACCTGC 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 95, 469, 470
Bme18I GGWCC 2 cut(s) 237, 433
BmeT110I CYCGRG 1 cut(s) 468
BmgBI CACGTC 2 cut(s) 45, 211
BmgT120I GGNCC 2 cut(s) 237, 433
BmrFI CCNGG 3 cut(s) 95, 469, 470
BmtI GCTAGC 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 344
BpuEI CTTGAG 3 cut(s) 68, 80, 569
BpuMI CCSGG 2 cut(s) 469, 470
BsaJI CCNNGG 3 cut(s) 93, 426, 468
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 142, 264, 442, 474
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 2 cut(s) 531, 620
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 93, 426, 468
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 5 cut(s) 16, 142, 264, 442, 474
BseMI GCAATG 2 cut(s) 531, 620
BseMII CTCAG 4 cut(s) 21, 335, 353, 605
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 32, 398, 401
BshFI GGCC 2 cut(s) 425, 464
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 436, 469
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 5 cut(s) 16, 142, 264, 442, 474
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 2 cut(s) 425, 464
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 4 cut(s) 431, 483, 486, 491
BspANI GGCC 2 cut(s) 425, 464
BspCNI CTCAG 4 cut(s) 22, 336, 354, 606
BspHI TCATGA 1 cut(s) 558
BspMAI CTGCAG 3 cut(s) 114, 324, 571
BspMI ACCTGC 1 cut(s) 409
BspOI GCTAGC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 531, 620
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 93, 426, 468
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 216, 453, 462
BstDEI CTNAG 5 cut(s) 30, 344, 362, 614, 671
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 3 cut(s) 191, 457, 461
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 93, 467, 468
BstSFI CTRYAG 3 cut(s) 110, 320, 567
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 2 cut(s) 425, 464
BtgI CCRYGG 1 cut(s) 426
BtrI CACGTC 2 cut(s) 45, 211
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 3 cut(s) 107, 180, 632
BtsIMutI CAGTG 4 cut(s) 27, 107, 180, 632
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 216, 453, 462
CaiI CAGNNNCTG 1 cut(s) 343
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 237, 433
Cfr9I CCCGGG 1 cut(s) 468
CpoI CGGWCCG 1 cut(s) 433
Csp6I GTAC 1 cut(s) 379
CspI CGGWCCG 1 cut(s) 433
CviAII CATG 4 cut(s) 264, 427, 559, 655
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 5 cut(s) 30, 344, 362, 614, 671
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
EaeI YGGCCR 2 cut(s) 423, 462
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 237, 433
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 4 cut(s) 267, 430, 562, 658
FaiI YATR 6 cut(s) 120, 265, 428, 521, 560, 656
FaqI GGGAC 1 cut(s) 76
FatI CATG 4 cut(s) 263, 426, 558, 654
FauI CCCGC 1 cut(s) 479
FblI GTMKAC 1 cut(s) 104
FokI GGATG 1 cut(s) 523
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 1 cut(s) 215
HaeIII GGCC 2 cut(s) 425, 464
HapII CCGG 2 cut(s) 436, 469
Hin1II CATG 4 cut(s) 267, 430, 562, 658
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 2 cut(s) 555, 616
HpaII CCGG 2 cut(s) 436, 469
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 27, 105
Hpy188I TCNGA 3 cut(s) 334, 663, 705
Hpy188III TCNNGA 4 cut(s) 40, 206, 475, 559
Hpy8I GTNNAC 2 cut(s) 27, 105
HpyAV CCTTC 6 cut(s) 229, 500, 523, 556, 589, 678
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 3 cut(s) 44, 210, 699
HpyCH4V TGCA 6 cut(s) 112, 166, 185, 322, 569, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 457, 461
HpyF3I CTNAG 5 cut(s) 30, 344, 362, 614, 671
HpySE526I ACGT 3 cut(s) 44, 210, 699
Hsp92II CATG 4 cut(s) 267, 430, 562, 658
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 3 cut(s) 138, 448, 693
MaeI CTAG 1 cut(s) 215
MaeII ACGT 3 cut(s) 44, 210, 699
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 4 cut(s) 214, 361, 382, 451
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 2 cut(s) 425, 464
MluNI TGGCCA 2 cut(s) 425, 464
MlyI GAGTC 2 cut(s) 564, 625
MmeI TCCRAC 4 cut(s) 94, 257, 528, 585
Mox20I TGGCCA 2 cut(s) 425, 464
MscI TGGCCA 2 cut(s) 425, 464
MslI CAYNNNNRTG 1 cut(s) 625
Msp20I TGGCCA 2 cut(s) 425, 464
MspA1I CMGCKG 2 cut(s) 79, 343
MspI CCGG 2 cut(s) 436, 469
MspR9I CCNGG 3 cut(s) 95, 469, 470
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 191, 457, 461
NciI CCSGG 2 cut(s) 469, 470
NcoI CCATGG 1 cut(s) 426
NdeII GATC 1 cut(s) 351
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 4 cut(s) 267, 430, 562, 658
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 154
PagI TCATGA 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 409
PctI GAATGC 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 2 cut(s) 563, 624
PpsI GAGTC 2 cut(s) 563, 624
Psp124BI GAGCTC 1 cut(s) 135
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 2 cut(s) 237, 433
PstI CTGCAG 3 cut(s) 114, 324, 571
PstNI CAGNNNCTG 1 cut(s) 343
PvuII CAGCTG 2 cut(s) 79, 343
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 625
Rsr2I CGGWCCG 1 cut(s) 433
RsrII CGGWCCG 1 cut(s) 433
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 103
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 2 cut(s) 237, 433
SchI GAGTC 2 cut(s) 564, 625
ScrFI CCNGG 3 cut(s) 95, 469, 470
SduI GDGCHC 1 cut(s) 135
SfcI CTRYAG 3 cut(s) 110, 320, 567
SinI GGWCC 2 cut(s) 237, 433
SmaI CCCGGG 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 625
SmlI CTYRAG 3 cut(s) 59, 83, 584
SmoI CTYRAG 3 cut(s) 59, 83, 584
SsiI CCGC 4 cut(s) 431, 483, 486, 491
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 93, 467, 468
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 3 cut(s) 47, 213, 702
TaqI TCGA 5 cut(s) 39, 104, 149, 354, 504
TauI GCSGC 1 cut(s) 486
TscAI CASTG 4 cut(s) 34, 114, 187, 632
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 252, 542, 575
TspMI CCCGGG 1 cut(s) 468
TspRI CASTG 4 cut(s) 34, 114, 187, 632
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 237, 433
XmaI CCCGGG 1 cut(s) 468
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.