Prupe.4G062700_v2.0.a1

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015490
Physical Location & Seq
Reverse (-)
3008543 .. 3010315
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G062700.1

Sequence Viewer

Length: 984 bp
ATGCACCAGCCACGCACTTCCCAACCTCACCACCGCAGCATCACCGTGGCCCCCCTTCCTCTCTCCATCTGGTCATCCCACTCACCCTCTTGTGCATATATATATATATATATATATATATCACCAACACCGACCCCAACCCCAACCCCAACTCTCCAAGAGCGTCACTTTGGCATTTTCACAAACACCTCTTGTGTCCTCGTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTTGAGCAGATTAATGAGAACCCAGGTTGAAGAGAGGTTCTCTGAGTTTTTTGAGAAGTGGGTTTGTCAGCTTGAGCAGCTCCAGCAACAGCTTCTCAAGCTGTCTGAGGAGACACTGCAGAATGAGGTAGAGCTACAAGCTTTGGTGTCGAAAGTCACCTACCTACACAAGGAATATTACACTGTGAAATGGGCTGCTGCTCGTGAAGATGTCCTGGCCTTCTTTTGCCCTGTTTGGTCGAGCCCTTTAGAGAATGCCTATAATTGGGTCACTGGTTGGAAGCCTTCAATGCTGTTTCAGCTCATTGGGTCGCTGAGGAAGACGAGGCTGGTGAACATGTCGGAGGAGCAGCTGAAGAAGATTGAAGTGCTGAGGCTGAAGATGAGGTATGAGGAGGAGAAGGTGGAGAGGGAAATGGAGAGGCAGCAGGTGGCCATGGCGGACCGGAGGATGGTCGAGTTGGCCCGGTTGGCGAGCCGGGTGAGGAACGGCGGCGAGGTGGTGGAGGTGGAGGTGGAAGGGTTAGTGGATATGGCATTGAAGGTGATGTTGAGTGGGTTGGAGAGGGTGATGAAGGCTGCAGATTGTGTGAGGCTCAAGACATTGAAGGGTGTTTTGGATGTGCTGAGCCCATTGCAGTGTGTGGAGTTCTTGGCTGCTACTTGCATGGTTCAGATTAGGCTAAGGCAATGGGGAAGGAAAAAATGTGACCAAAATGCTCTCCTAAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

328

Amino Acids

37.74

Weight (kDa)

8.72

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18650
fragaria_vesca FvH4_3g07650
malus_domestica MD05G1073300.v1.1 MD05G1299100.v1.1 MD10G1044600.v1.1 MD14G1136000.v1.1
prunus_persica Prupe.4G062700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011031
rosa_laevigata RLG00000031804
rosa_multiflora Rmu_sc0003242.1_g000003
rosa_roxburghii Rroxscaffold_1G00065370
rosa_rugosa Rorug04G0454700
rosa_samantha Rh5BG081600 Rh5DG081400
rosa_wichuraiana Rw0G000130 Rw0G017820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AciI CCGC 3 cut(s) 34, 689, 741
AcoI YGGCCR 1 cut(s) 681
AcuI CTGAAG 2 cut(s) 623, 647
AfiI CCNNNNNNNGG 3 cut(s) 418, 513, 700
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 5 cut(s) 278, 537, 614, 790, 856
AjnI CCWGG 2 cut(s) 270, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 9 cut(s) 207, 319, 328, 340, 349, 382, 389, 550, 601
AluI AGCT 9 cut(s) 207, 319, 328, 340, 349, 382, 389, 550, 601
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 4 cut(s) 48, 465, 681, 711
ApeKI GCWGC 8 cut(s) 36, 325, 443, 446, 598, 673, 827, 905
AseI ATTAAT 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 49, 691, 712
AsuC2I CCSGG 2 cut(s) 715, 728
AsuHPI GGTGA 9 cut(s) 20, 34, 75, 114, 397, 592, 742, 805, 829
AvaII GGWCC 1 cut(s) 691
BalI TGGCCA 1 cut(s) 683
BanII GRGCYC 2 cut(s) 494, 881
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 575
BbvCI CCTCAGC 2 cut(s) 563, 620
BbvI GCAGC 8 cut(s) 48, 337, 430, 433, 610, 685, 814, 892
BccI CCATC 2 cut(s) 74, 694
BceAI ACGGC 1 cut(s) 754
BciT130I CCWGG 2 cut(s) 272, 464
BcnI CCSGG 2 cut(s) 715, 728
BcoDI GTCTC 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 365, 828
BfuAI ACCTGC 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 719
BisI GCNGC 9 cut(s) 37, 326, 444, 447, 599, 674, 742, 828, 906
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 9 cut(s) 38, 327, 445, 448, 600, 675, 743, 829, 907
Bme1390I CCNGG 4 cut(s) 272, 464, 715, 728
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 3 cut(s) 49, 691, 712
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 4 cut(s) 272, 464, 715, 728
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 3 cut(s) 563, 620, 932
Bpu1102I GCTNAGC 1 cut(s) 875
BpuEI CTTGAG 3 cut(s) 329, 341, 830
BpuMI CCSGG 2 cut(s) 715, 728
BsaJI CCNNGG 3 cut(s) 45, 270, 684
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 513, 700
Bse1I ACTGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 881, 944
BseBI CCWGG 2 cut(s) 272, 464
BseDI CCNNGG 3 cut(s) 45, 270, 684
BseGI GGATG 3 cut(s) 74, 705, 874
BseLI CCNNNNNNNGG 3 cut(s) 418, 513, 700
BseMI GCAATG 2 cut(s) 881, 944
BseMII CTCAG 5 cut(s) 282, 345, 554, 611, 866
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 4 cut(s) 371, 608, 656, 659
BseXI GCAGC 8 cut(s) 48, 337, 430, 433, 610, 685, 814, 892
BshFI GGCC 4 cut(s) 50, 467, 683, 713
BsiSI CCGG 3 cut(s) 694, 715, 727
BslI CCNNNNNNNGG 3 cut(s) 418, 513, 700
BsmAI GTCTC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 4 cut(s) 50, 467, 683, 713
Bsp1286I GDGCHC 2 cut(s) 494, 881
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 3 cut(s) 34, 689, 741
BspANI GGCC 4 cut(s) 50, 467, 683, 713
BspCNI CTCAG 5 cut(s) 283, 346, 555, 612, 867
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 369, 832
BspMI ACCTGC 1 cut(s) 667
BsrDI GCAATG 2 cut(s) 881, 944
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 3 cut(s) 45, 270, 684
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 272, 464
Bst4CI ACNGT 2 cut(s) 46, 433
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 6 cut(s) 291, 354, 563, 620, 875, 932
BstDSI CCRYGG 2 cut(s) 45, 684
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 3 cut(s) 74, 705, 874
BstMAI GTCTC 1 cut(s) 353
BstMWI GCNNNNNNNGC 6 cut(s) 325, 331, 346, 538, 547, 719
BstNI CCWGG 2 cut(s) 272, 464
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 4 cut(s) 270, 462, 713, 726
BstSFI CTRYAG 2 cut(s) 365, 828
BstV1I GCAGC 8 cut(s) 48, 337, 430, 433, 610, 685, 814, 892
BstV2I GAAGAC 1 cut(s) 575
BsuRI GGCC 4 cut(s) 50, 467, 683, 713
BtgI CCRYGG 2 cut(s) 45, 684
BtsCI GGATG 3 cut(s) 74, 705, 874
BtsI GCAGTG 2 cut(s) 362, 893
BtsIMutI CAGTG 4 cut(s) 362, 429, 519, 893
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 724
Cfr13I GGNCC 3 cut(s) 49, 691, 712
CpoI CGGWCCG 1 cut(s) 691
CseI GACGC 1 cut(s) 152
CspI CGGWCCG 1 cut(s) 691
CviAII CATG 3 cut(s) 586, 685, 916
DdeI CTNAG 6 cut(s) 291, 354, 563, 620, 875, 932
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 2 cut(s) 494, 881
Eco47I GGWCC 1 cut(s) 691
Eco57I CTGAAG 2 cut(s) 623, 647
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 270, 462
EcoT14I CCWWGG 1 cut(s) 684
EcoT38I GRGCYC 2 cut(s) 494, 881
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 3 cut(s) 589, 688, 919
FatI CATG 3 cut(s) 585, 684, 915
Fnu4HI GCNGC 9 cut(s) 37, 326, 444, 447, 599, 674, 742, 828, 906
FokI GGATG 3 cut(s) 61, 712, 881
FriOI GRGCYC 2 cut(s) 494, 881
Fsp4HI GCNGC 9 cut(s) 37, 326, 444, 447, 599, 674, 742, 828, 906
GluI GCNGC 9 cut(s) 37, 326, 444, 447, 599, 674, 742, 828, 906
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 4 cut(s) 50, 467, 683, 713
HapII CCGG 3 cut(s) 694, 715, 727
HgaI GACGC 1 cut(s) 152
Hin1II CATG 3 cut(s) 589, 688, 919
HindIII AAGCTT 1 cut(s) 387
HpaII CCGG 3 cut(s) 694, 715, 727
HphI GGTGA 9 cut(s) 20, 34, 75, 114, 397, 592, 742, 805, 829
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 4 cut(s) 292, 355, 592, 924
Hpy188III TCNNGA 2 cut(s) 452, 847
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 9 cut(s) 65, 478, 543, 643, 761, 784, 817, 850, 939
HpyCH4III ACNGT 2 cut(s) 46, 433
HpyCH4V TGCA 6 cut(s) 4, 95, 367, 830, 886, 915
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 331, 346, 538, 547, 719
HpyF3I CTNAG 6 cut(s) 291, 354, 563, 620, 875, 932
Hsp92II CATG 3 cut(s) 589, 688, 919
LmnI GCTCC 2 cut(s) 333, 595
Lsp1109I GCAGC 8 cut(s) 48, 337, 430, 433, 610, 685, 814, 892
LweI GCATC 1 cut(s) 48
MaeIII GTNAC 4 cut(s) 164, 403, 517, 956
MboII GAAGA 6 cut(s) 290, 467, 580, 616, 619, 640
MhlI GDGCHC 2 cut(s) 494, 881
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 2 cut(s) 247, 511
MluNI TGGCCA 1 cut(s) 683
MmeI TCCRAC 3 cut(s) 506, 570, 789
Mox20I TGGCCA 1 cut(s) 683
MscI TGGCCA 1 cut(s) 683
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 44, 886
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 3 cut(s) 694, 715, 727
MspR9I CCNGG 4 cut(s) 272, 464, 715, 728
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 2 cut(s) 272, 464
MwoI GCNNNNNNNGC 6 cut(s) 325, 331, 346, 538, 547, 719
NciI CCSGG 2 cut(s) 715, 728
NcoI CCATGG 1 cut(s) 684
NlaIII CATG 3 cut(s) 589, 688, 919
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 4 cut(s) 164, 403, 517, 956
NspI RCATGY 1 cut(s) 589
PaqCI CACCTGC 1 cut(s) 667
PciI ACATGT 1 cut(s) 585
PctI GAATGC 1 cut(s) 508
PkrI GCNGC 9 cut(s) 38, 327, 445, 448, 600, 675, 743, 829, 907
PscI ACATGT 1 cut(s) 585
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 270, 462
PspGI CCWGG 2 cut(s) 270, 462
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 49, 691, 712
PstI CTGCAG 2 cut(s) 369, 832
PvuII CAGCTG 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 44, 886
Rsr2I CGGWCCG 1 cut(s) 691
RsrII CGGWCCG 1 cut(s) 691
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 9 cut(s) 37, 326, 444, 447, 599, 674, 742, 828, 906
Sau96I GGNCC 3 cut(s) 49, 691, 712
ScrFI CCNGG 4 cut(s) 272, 464, 715, 728
SduI GDGCHC 2 cut(s) 494, 881
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 2 cut(s) 365, 828
SinI GGWCC 1 cut(s) 691
SmiMI CAYNNNNRTG 2 cut(s) 44, 886
SmlI CTYRAG 3 cut(s) 320, 344, 845
SmoI CTYRAG 3 cut(s) 320, 344, 845
Sse9I AATT 2 cut(s) 247, 511
SsiI CCGC 3 cut(s) 34, 689, 741
SspI AATATT 1 cut(s) 425
StyD4I CCNGG 4 cut(s) 270, 462, 713, 726
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 2 cut(s) 46, 433
TaqI TCGA 3 cut(s) 398, 488, 705
TasI AATT 2 cut(s) 247, 511
TauI GCSGC 1 cut(s) 744
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 4 cut(s) 369, 436, 526, 893
TseFI GTSAC 4 cut(s) 164, 403, 517, 956
TseI GCWGC 8 cut(s) 36, 325, 443, 446, 598, 673, 827, 905
Tsp45I GTSAC 4 cut(s) 164, 403, 517, 956
TspDTI ATGAA 1 cut(s) 836
TspRI CASTG 4 cut(s) 369, 436, 526, 893
VpaK11BI GGWCC 1 cut(s) 691
VspI ATTAAT 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 416
XceI RCATGY 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.