AT4G19830

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012322
Physical Location & Seq
Reverse (-)
10772335 .. 10774087
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19830.1

Sequence Viewer

Length: 690 bp
ATGATTCGGTGCTTCGCGTGGACACCACTAGTAGGTGCTCCCTTAATCACCACCGTCCATTTCACATCTCCGCCATCTCTCAGAATCTTCGCATCTCGTTCTTCCGCACCATCATCATCATCATCATCATCATCGACAGTTGCAGCAGCATCTAGAAGATCAATATCTCTGTCAATTATCGCCGTCACGTCTTCCGTCGTCTCCTCCTTTTGCTTCTCGTCTCCGGCACTAGCCGACTTCTCTGAAATCCCTAATTCCGGCGGCGTTAAAGCTCTCGACCTCCGAATCGGCGATGGTGACGTTCCCATTGAAGGAGATCAGATTGAAATACATTACTATGGGAGATTAGCTGCGAAGCAAGGATGGAGATTTGATTCAACATATGATCATAAAGATAGTAATGGTGAAGCTGTTCCTTTCACATTCGTCCTTGGTTCTAGCAAAGTAATTCCGGGGATTGAAACAGCTGTGAGGTCTATGAAAGTAGGCGGGATTCGTCGGGTGGTTATACCTCCATCTCAGGGATACCAGAATACATCACAGGAGCCTCTCCCACCAAACTTCTTTGACAGACAGAGACTCTTCACGACTATATTTAACCCAACACGTCTCGCCAATGGAGAAGGTTCTACTCTTGGAACTCTCGTTTTTGACATTGAACTTGTCAGCACCAGACGCCTTCACCGATGA

Protein Analysis

229

Amino Acids

24.71

Weight (kDa)

9.34

Isoelectric Point (pI)

67.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 102 - 222 2.1e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19830
fragaria_vesca FvH4_4g09390 FvH4_4g09390
malus_domestica MD00G1111500.v1.1
prunus_persica Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis pycom13g22030
rosa_chinensis RchiOBHm_Chr4g0402661
rosa_multiflora Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii Rroxscaffold_5G00347410
rosa_rugosa Rorug04G0037500 Rorug04G0037600
rosa_samantha Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 71, 105, 261, 489
AcyI GRCGYC 1 cut(s) 676
AfiI CCNNNNNNNGG 4 cut(s) 32, 257, 311, 521
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 5 cut(s) 311, 326, 378, 461, 659
AhlI ACTAGT 1 cut(s) 28
AjiI CACGTC 2 cut(s) 189, 608
AluBI AGCT 4 cut(s) 272, 350, 410, 467
AluI AGCT 4 cut(s) 272, 350, 410, 467
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 4 cut(s) 205, 225, 571, 614
ApeKI GCWGC 3 cut(s) 143, 146, 350
Asp700I GAANNNNTTC 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 4 cut(s) 40, 308, 416, 674
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 155, 158, 337
BccI CCATC 5 cut(s) 82, 118, 287, 357, 523
BceAI ACGGC 1 cut(s) 167
BciVI GTATCC 1 cut(s) 518
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 4 cut(s) 205, 225, 571, 614
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 4 cut(s) 29, 153, 230, 438
BfuI GTATCC 1 cut(s) 518
BisI GCNGC 4 cut(s) 144, 147, 262, 351
BlsI GCNGC 4 cut(s) 145, 148, 263, 352
Bme1390I CCNGG 1 cut(s) 453
BmgBI CACGTC 2 cut(s) 189, 608
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 2 cut(s) 101, 158
BpiI GAAGAC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 676
BsaJI CCNNGG 2 cut(s) 430, 452
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 257, 311, 521
Bse8I GATNNNNATC 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 430, 452
BseGI GGATG 1 cut(s) 368
BseJI GATNNNNATC 1 cut(s) 163
BseLI CCNNNNNNNGG 4 cut(s) 32, 257, 311, 521
BseMII CTCAG 2 cut(s) 94, 533
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 155, 158, 337
Bsh1236I CGCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 3 cut(s) 224, 258, 452
BslI CCNNNNNNNGG 4 cut(s) 32, 257, 311, 521
BsmAI GTCTC 4 cut(s) 205, 225, 571, 614
BsmBI CGTCTC 3 cut(s) 205, 225, 614
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 158, 316, 385
BspACI CCGC 4 cut(s) 71, 105, 261, 489
BspCNI CTCAG 2 cut(s) 93, 532
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 546
BssECI CCNNGG 2 cut(s) 430, 452
BssMI GATC 3 cut(s) 158, 316, 385
BssNI GRCGYC 1 cut(s) 676
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 55, 139
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 676
BstDEI CTNAG 2 cut(s) 80, 519
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 161, 319, 388
BstMAI GTCTC 4 cut(s) 205, 225, 571, 614
BstMBI GATC 3 cut(s) 158, 316, 385
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 451
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 155, 158, 337
BstV2I GAAGAC 1 cut(s) 183
BsuI GTATCC 1 cut(s) 518
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 2 cut(s) 189, 608
BtsCI GGATG 1 cut(s) 368
CseI GACGC 1 cut(s) 684
CviJI RGCY 6 cut(s) 233, 272, 350, 410, 467, 547
CviKI_1 RGCY 6 cut(s) 233, 272, 350, 410, 467, 547
DdeI CTNAG 2 cut(s) 80, 519
DpnI GATC 3 cut(s) 160, 318, 387
DpnII GATC 3 cut(s) 158, 316, 385
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 3 cut(s) 205, 225, 614
FaiI YATR 7 cut(s) 339, 382, 384, 390, 479, 509, 593
FauI CCCGC 1 cut(s) 482
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 144, 147, 262, 351
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 4 cut(s) 144, 147, 262, 351
FspBI CTAG 4 cut(s) 29, 153, 230, 438
GluI GCNGC 4 cut(s) 144, 147, 262, 351
HapII CCGG 3 cut(s) 224, 258, 452
HgaI GACGC 1 cut(s) 684
Hin1I GRCGYC 1 cut(s) 676
HinfI GANTC 6 cut(s) 4, 84, 285, 374, 493, 579
HpaII CCGG 3 cut(s) 224, 258, 452
HphI GGTGA 4 cut(s) 40, 308, 416, 674
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 83, 244, 284, 321
Hpy188III TCNNGA 3 cut(s) 153, 275, 586
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 2 cut(s) 200, 501
HpyAV CCTTC 3 cut(s) 305, 617, 689
HpyCH4III ACNGT 2 cut(s) 55, 139
HpyCH4IV ACGT 3 cut(s) 188, 300, 607
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpyF3I CTNAG 2 cut(s) 80, 519
HpySE526I ACGT 3 cut(s) 188, 300, 607
Hsp92I GRCGYC 1 cut(s) 676
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 158, 316, 385
LmnI GCTCC 2 cut(s) 43, 544
LpnPI CCDG 7 cut(s) 237, 271, 465, 506, 527, 542, 685
Lsp1109I GCAGC 3 cut(s) 155, 158, 337
LweI GCATC 2 cut(s) 101, 158
MaeI CTAG 4 cut(s) 29, 153, 230, 438
MaeII ACGT 3 cut(s) 188, 300, 607
MaeIII GTNAC 2 cut(s) 184, 296
MalI GATC 3 cut(s) 160, 318, 387
MboI GATC 3 cut(s) 158, 316, 385
MboII GAAGA 5 cut(s) 79, 93, 168, 183, 574
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 174, 253, 447
MlyI GAGTC 1 cut(s) 573
MnlI CCTC 5 cut(s) 214, 290, 465, 522, 558
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 3 cut(s) 44, 267, 597
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 3 cut(s) 224, 258, 452
MspR9I CCNGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 675
NciI CCSGG 1 cut(s) 453
NdeI CATATG 1 cut(s) 382
NdeII GATC 3 cut(s) 158, 316, 385
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 2 cut(s) 184, 296
PcsI WCGNNNNNNNCGW 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 4, 84, 285, 374, 493
PkrI GCNGC 4 cut(s) 145, 148, 263, 352
PleI GAGTC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 3 cut(s) 44, 267, 597
SatI GCNGC 4 cut(s) 144, 147, 262, 351
Sau3AI GATC 3 cut(s) 158, 316, 385
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 101, 158
SmiMI CAYNNNNRTG 1 cut(s) 336
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 3 cut(s) 174, 253, 447
SsiI CCGC 4 cut(s) 71, 105, 261, 489
SspMI CTAG 4 cut(s) 29, 153, 230, 438
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 55, 139
TaiI ACGT 3 cut(s) 191, 303, 610
TaqI TCGA 2 cut(s) 134, 276
TasI AATT 3 cut(s) 174, 253, 447
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 5 cut(s) 4, 84, 285, 374, 493
Tru1I TTAA 3 cut(s) 44, 267, 597
Tru9I TTAA 3 cut(s) 44, 267, 597
TseFI GTSAC 2 cut(s) 184, 296
TseI GCWGC 3 cut(s) 143, 146, 350
Tsp45I GTSAC 2 cut(s) 184, 296
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 1 cut(s) 184
XbaI TCTAGA 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 4 cut(s) 29, 153, 230, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.