Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Forward (+)

11128173 .. 11132827

Gene Structure 4655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATGCTCCAATACTCCGCAGCATTAGGATGCTCTTTTGCTCCCGACCATTCAACAGTGCGTTCAGTTCTTCCCAACATCACCTCCGCAACTTCATCGCCATCCAGTTTAACTAGAAGGGTAGTTTTATCGACTGCTTTAATCTCCACCACATTGGGCTTTACCGTGTCTACTCCTTCAAACTCCGCCGCAGCTGAATTCTTGAAACTCCCTAACTCTGGTGGCGTCAAGGCTTTGGACCTTCGTGTTGGTACTGGTGAAGTACCCTCCAATGGCGACCAGGTCTCTGTTCATTACTATGGAAGGTTGGCAGCAAAACAAGGATGGCGCTTTGACTCAACATATGATCACAAAGATGAAAATGGTGAACCGACTCCTTTTGTATTCGTGGTTGGGTCTGGGAAAGTTATTTCAGGGATTGAAACTGCTGTGAAATCTATGAAAGTGGGTGGTCTTCGTAGGATCGTTATACCACCGTCGCAAGGATATCAGAGCACATCACAAGAACCCATACCACCCAATTTTTTTGACAGGCAGAGACTGTTTACAACCATCTTCAATCCAACTCGTCTTGCTAATGGAGAAGGTTCAACTTTAGGAACGCTTGTATTTGATATCGAGCTGGTCAGCCTGAGGCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

215

Amino Acids

22.94

Weight (kDa)

9.13

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	89 - 209	5.8e-22	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	4 cut(s)	18, 87, 186, 189
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	253, 264
AfiI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
AgsI	TTSAA	6 cut(s)	54, 180, 205, 422, 559, 591
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	194, 622
AluI	AGCT	2 cut(s)	194, 622
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	289, 532
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	20, 191, 311
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	73, 269, 377
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	32, 203, 323
BccI	CCATC	3 cut(s)	109, 318, 560
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	289, 532
BfaI	CTAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	4 cut(s)	21, 189, 192, 312
BlsI	GCNGC	4 cut(s)	22, 190, 193, 313
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 272, 482
Bse1I	ACTGG	2 cut(s)	105, 259
Bse21I	CCTNAGG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	3 cut(s)	35, 101, 329
BseLI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	2 cut(s)	105, 259
BseXI	GCAGC	3 cut(s)	32, 203, 323
BsiHKAI	GWGCWC	1 cut(s)	497
BslI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
BsmAI	GTCTC	2 cut(s)	289, 532
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	346, 462
BspACI	CCGC	4 cut(s)	18, 87, 186, 189
BspCNI	CTCAG	1 cut(s)	624
BspPI	GGATC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	105, 259
BssMI	GATC	2 cut(s)	346, 462
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	4 cut(s)	58, 166, 477, 543
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	35, 101, 329
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	349, 465
BstMAI	GTCTC	2 cut(s)	289, 532
BstMBI	GATC	2 cut(s)	346, 462
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	32, 203, 323
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	35, 101, 329
BtsIMutI	CAGTG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	541
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	252, 263
CviJI	RGCY	5 cut(s)	159, 194, 233, 622, 630
CviKI_1	RGCY	5 cut(s)	159, 194, 233, 622, 630
CviQI	GTAC	2 cut(s)	252, 263
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	2 cut(s)	348, 464
DpnII	GATC	2 cut(s)	346, 462
EciI	GGCGGA	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	289
Eco32I	GATATC	2 cut(s)	488, 616
Eco47I	GGWCC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	2 cut(s)	488, 616
FaiI	YATR	9 cut(s)	300, 343, 345, 440, 470, 512, 639, 641, 643
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	21, 189, 192, 312
FokI	GGATG	3 cut(s)	42, 88, 336
Fsp4HI	GCNGC	4 cut(s)	21, 189, 192, 312
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	21, 189, 192, 312
HaeII	RGCGCY	1 cut(s)	331
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	335, 373
HphI	GGTGA	3 cut(s)	73, 269, 377
Hpy166II	GTNNAC	3 cut(s)	171, 368, 546
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	2 cut(s)	44, 202
Hpy8I	GTNNAC	3 cut(s)	171, 368, 546
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	5 cut(s)	111, 186, 251, 297, 578
HpyCH4III	ACNGT	4 cut(s)	58, 166, 477, 543
HpyF3I	CTNAG	1 cut(s)	632
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 462
LmnI	GCTCC	2 cut(s)	12, 46
LpnPI	CCDG	9 cut(s)	118, 204, 240, 266, 293, 384, 399, 517, 608
Lsp1109I	GCAGC	3 cut(s)	32, 203, 323
LweI	GCATC	1 cut(s)	20
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	114
MalI	GATC	2 cut(s)	348, 464
MboI	GATC	2 cut(s)	346, 462
MboII	GAAGA	3 cut(s)	62, 446, 547
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	2 cut(s)	197, 520
MlyI	GAGTC	2 cut(s)	329, 367
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	3 cut(s)	94, 277, 627
MseI	TTAA	2 cut(s)	110, 140
MslI	CAYNNNNRTG	3 cut(s)	28, 297, 354
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	2 cut(s)	346, 462
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	22, 190, 193, 313
PleI	GAGTC	2 cut(s)	329, 367
PpsI	GAGTC	2 cut(s)	329, 367
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	253, 264
RsaNI	GTAC	2 cut(s)	252, 263
RseI	CAYNNNNRTG	3 cut(s)	28, 297, 354
SaqAI	TTAA	2 cut(s)	110, 140
SatI	GCNGC	4 cut(s)	21, 189, 192, 312
Sau3AI	GATC	2 cut(s)	346, 462
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	329, 367
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	7 cut(s)	86, 196, 243, 285, 308, 589, 624
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	3 cut(s)	28, 297, 354
Sse9I	AATT	2 cut(s)	197, 520
SsiI	CCGC	4 cut(s)	18, 87, 186, 189
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	4 cut(s)	58, 166, 477, 543
TaqI	TCGA	2 cut(s)	131, 618
TasI	AATT	2 cut(s)	197, 520
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	110, 140
Tru9I	TTAA	2 cut(s)	110, 140
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	3 cut(s)	20, 191, 311
TspDTI	ATGAA	4 cut(s)	84, 281, 372, 455
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.